TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 64 2e-033
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 64 4e-031
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 64 8e-031
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 64 2e-029
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 64 2e-029
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 64 2e-028
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 63 7e-027
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 64 1e-025
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 53 1e-024
gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Po... 63 6e-023
gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Po... 63 6e-023
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 64 2e-021
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 63 4e-021
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 54 5e-021
gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Po... 63 7e-021
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 64.3 bits (134), Expect(6) = 2e-033
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 590 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 462
Score = 47.3 bits (97), Expect(6) = 2e-033
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 44.1 bits (90), Expect(6) = 2e-033
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3 / -1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S + G I+K G GCG+C+++KC
Sbjct: 773 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 678
Score = 30.9 bits (61), Expect(6) = 2e-033
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / -1
Query: 177 DWLDAKATWYGKPT 218
DW A ATWYG PT
Sbjct: 857 DWSPAGATWYGSPT 816
Score = 24.0 bits (46), Expect(6) = 2e-033
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 656 CSGNPVTVVITD 621
Score = 22.1 bits (42), Expect(6) = 2e-033
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -1
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTY 180
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 64.3 bits (134), Expect(6) = 4e-031
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 570 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 442
Score = 47.3 bits (97), Expect(6) = 4e-031
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 208
Score = 44.1 bits (90), Expect(6) = 4e-031
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3 / -1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S + G I+K G GCG+C+++KC
Sbjct: 753 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 658
Score = 24.0 bits (46), Expect(6) = 4e-031
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 636 CSGNPVTVVITD 601
Score = 22.6 bits (43), Expect(6) = 4e-031
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3 / -1
Query: 189 AKATWYGKPT 218
A TWYG PT
Sbjct: 825 AGGTWYGSPT 796
Score = 22.1 bits (42), Expect(6) = 4e-031
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -1
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 225 ESGKTIVASGVIPAGWAPGQTY 160
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 64.3 bits (134), Expect(6) = 8e-031
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -3
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 642 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 514
Score = 47.3 bits (97), Expect(6) = 8e-031
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -3
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 399 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 280
Score = 42.3 bits (86), Expect(6) = 8e-031
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3 / -3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF S + G I+K G GCG+C+++KC
Sbjct: 825 VEQAPFFSFISAGGDSIYKSGQGCGACYQVKC 730
Score = 24.0 bits (46), Expect(6) = 8e-031
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -3
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 708 CSGNPVTVVITD 673
Score = 23.5 bits (45), Expect(6) = 8e-031
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3 / -3
Query: 195 ATWYGKPT 218
ATWYG PT
Sbjct: 891 ATWYGSPT 868
Score = 22.1 bits (42), Expect(6) = 8e-031
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -3
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 297 ESGKTIVASGVIPAGWAPGQTY 232
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 64.3 bits (134), Expect(5) = 2e-029
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 449 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 577
Score = 44.1 bits (90), Expect(5) = 2e-029
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S + G I+K G GCG+C+++KC
Sbjct: 266 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 361
Score = 39.1 bits (79), Expect(5) = 2e-029
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3 / +1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPL 749
SD++ P++ SWGA+W+ D+ L+ PL
Sbjct: 691 SDSWVPMQKSWGAVWKLDAGSLLRAPL 771
Score = 30.9 bits (61), Expect(5) = 2e-029
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 177 DWLDAKATWYGKPT 218
DW A ATWYG PT
Sbjct: 182 DWSPAGATWYGSPT 223
Score = 24.0 bits (46), Expect(5) = 2e-029
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 383 CSGNPVTVVITD 418
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 64.3 bits (134), Expect(5) = 2e-029
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 590 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 462
Score = 47.3 bits (97), Expect(5) = 2e-029
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -2
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 44.1 bits (90), Expect(5) = 2e-029
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3 / -2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S + G I+K G GCG+C+++KC
Sbjct: 773 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 678
Score = 24.0 bits (46), Expect(5) = 2e-029
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -2
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 656 CSGNPVTVVITD 621
Score = 22.1 bits (42), Expect(5) = 2e-029
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -2
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTY 180
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 64.3 bits (134), Expect(5) = 2e-028
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -3
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 569 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 441
Score = 47.3 bits (97), Expect(5) = 2e-028
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -3
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 326 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 207
Score = 40.5 bits (82), Expect(5) = 2e-028
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3 / -3
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + P +S + G I+K G GCG+C+++KC
Sbjct: 752 VEQAPSSSFISAGGDSIYKSGQGCGACYQVKC 657
Score = 24.0 bits (46), Expect(5) = 2e-028
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -3
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 635 CSGNPVTVVITD 600
Score = 22.1 bits (42), Expect(5) = 2e-028
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -3
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 224 ESGKTIVASGVIPAGWAPGQTY 159
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 62.9 bits (131), Expect(5) = 7e-027
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 428 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 556
Score = 45.1 bits (92), Expect(5) = 7e-027
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S+ + G I+K G GCG+C+++KC
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 30.9 bits (61), Expect(5) = 7e-027
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 177 DWLDAKATWYGKPT 218
DW A ATWYG PT
Sbjct: 161 DWSPAGATWYGSPT 202
Score = 30.4 bits (60), Expect(5) = 7e-027
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3 / +2
Query: 558 KVTFHLEKGCGPNYLALLVK 617
KVTFH++ G P Y A LV+
Sbjct: 557 KVTFHVDSGSNPYYFATLVE 616
Score = 24.0 bits (46), Expect(5) = 7e-027
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 362 CSGNPVTVVITD 397
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 64.3 bits (134), Expect(5) = 1e-025
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 594 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 466
Score = 47.3 bits (97), Expect(5) = 1e-025
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -2
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 351 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 232
Score = 31.3 bits (62), Expect(5) = 1e-025
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3 / -2
Query: 318 KDGLGCGSCFEIKC 359
K G GCG+C+++KC
Sbjct: 723 KSGQGCGACYQVKC 682
Score = 24.0 bits (46), Expect(5) = 1e-025
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -2
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 660 CSGNPVTVVITD 625
Score = 22.1 bits (42), Expect(5) = 1e-025
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -2
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 249 ESGKTIVASGVIPAGWAPGQTY 184
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 52.8 bits (109), Expect(5) = 1e-024
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3 / +1
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA GE +LR G + + +RR CKY K
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGK 342
Score = 44.1 bits (90), Expect(5) = 1e-024
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITD 410
V+ PF + + +FK+G GCG+C++++C CS + V + +TD
Sbjct: 37 VDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 183
Score = 38.6 bits (78), Expect(5) = 1e-024
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3 / +1
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L+LLV++ +E G + + H WGA W
Sbjct: 346 IAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 498
Score = 25.8 bits (50), Expect(5) = 1e-024
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 732 PLKGPLTVRLTT 767
PLKGP +V+LTT
Sbjct: 514 PLKGPFSVKLTT 549
Score = 24.0 bits (46), Expect(5) = 1e-024
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3 / +1
Query: 795 DVIPANWKANTAYTAK 842
+VIP NW YT++
Sbjct: 580 EVIPRNWAPKATYTSR 627
>gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012F04 5', mRNA sequence
Length = 591
Score = 62.9 bits (131), Expect(4) = 6e-023
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 428 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 556
Score = 45.1 bits (92), Expect(4) = 6e-023
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S+ + G I+K G GCG+C+++KC
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 30.9 bits (61), Expect(4) = 6e-023
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 177 DWLDAKATWYGKPT 218
DW A ATWYG PT
Sbjct: 161 DWSPAGATWYGSPT 202
Score = 24.0 bits (46), Expect(4) = 6e-023
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +2
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 362 CSGNPVTVVITD 397
>gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060H08 5', mRNA sequence
Length = 581
Score = 62.9 bits (131), Expect(4) = 6e-023
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 400 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 528
Score = 45.1 bits (92), Expect(4) = 6e-023
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S+ + G I+K G GCG+C+++KC
Sbjct: 217 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 312
Score = 30.9 bits (61), Expect(4) = 6e-023
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +1
Query: 177 DWLDAKATWYGKPT 218
DW A ATWYG PT
Sbjct: 133 DWSPAGATWYGSPT 174
Score = 24.0 bits (46), Expect(4) = 6e-023
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 334 CSGNPVTVVITD 369
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3 / -1
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ +Q +RV C + K
Sbjct: 666 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGK 538
Score = 47.3 bits (97), Expect(4) = 2e-021
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / -1
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 423 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 304
Score = 24.0 bits (46), Expect(4) = 2e-021
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -1
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 732 CSGNPVTVVITD 697
Score = 22.1 bits (42), Expect(4) = 2e-021
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / -1
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 321 ESGKTIVASGVIPAGWAPGQTY 256
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 62.9 bits (131), Expect(4) = 4e-021
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +3
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 84 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 212
Score = 47.3 bits (97), Expect(4) = 4e-021
Identities = 15/40 (37%), Positives = 29/40 (72%)
Frame = +3 / +3
Query: 669 SDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGGTKSV 788
SD++ P++ SWGA+W+ D+ L+ PL+++LT+ K++
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 446
Score = 24.0 bits (46), Expect(4) = 4e-021
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 375 CSGKPVVVHITD 410
CSG PV V ITD
Sbjct: 18 CSGNPVTVVITD 53
Score = 22.1 bits (42), Expect(4) = 4e-021
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3 / +3
Query: 768 EGGTKSVYDDVIPANWKANTAY 833
E G V VIPA W Y
Sbjct: 429 ESGKTIVASGVIPAGWAPGQTY 494
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 53.8 bits (111), Expect(5) = 5e-021
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +3 / -2
Query: 438 HFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
HFDL+G AFG MA GE +LR G I + +RR CKY K
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGK 676
Score = 37.7 bits (76), Expect(5) = 5e-021
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3 / -2
Query: 561 VTFHLEKGCGPNYLALLVKYXXXXXXXXXXXXKEKGSDTYEPLKHSWGAIW 713
+ FH+ +G +L++LV++ +E G + + H WGA W
Sbjct: 672 IAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 520
Score = 31.3 bits (62), Expect(5) = 5e-021
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3 / -2
Query: 333 CGSCFEIKCDKPVECSGKPVVVHITD 410
CG+C++++C CS + V + +TD
Sbjct: 912 CGACYKVRCLDKSICSRRAVTIIVTD 835
Score = 25.8 bits (50), Expect(5) = 5e-021
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 732 PLKGPLTVRLTT 767
PLKGP +V+LTT
Sbjct: 504 PLKGPFSVKLTT 469
Score = 24.0 bits (46), Expect(5) = 5e-021
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3 / -2
Query: 795 DVIPANWKANTAYTAK 842
+VIP NW YT++
Sbjct: 438 EVIPRNWAPKATYTSR 391
>gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043E09 5', mRNA sequence
Length = 621
Score = 62.9 bits (131), Expect(3) = 7e-021
Identities = 22/43 (51%), Positives = 34/43 (79%)
Frame = +3 / +2
Query: 432 AYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSK 560
++HFDL+GTAFGAMA G+E++LR AG++ ++ +RV C + K
Sbjct: 428 SFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGK 556
Score = 45.1 bits (92), Expect(3) = 7e-021
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3 / +2
Query: 264 VNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC 359
V + PF+S+ + G I+K G GCG+C+++KC
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 30.9 bits (61), Expect(3) = 7e-021
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3 / +2
Query: 177 DWLDAKATWYGKPT 218
DW A ATWYG PT
Sbjct: 161 DWSPAGATWYGSPT 202
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 585,189,550
Number of Sequences: 369679
Number of extensions: 7523782
Number of successful extensions: 45482
Number of sequences better than 1.0e-020: 16
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 17934083172
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)