TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT485310.1|DT485310 WS02527.B21_N20 PT-MB-N-A-15 Populus... 110 3e-042
gb|CF233701.1|CF233701 PtaJXO0026F5F0511 Poplar cDNA librar... 110 5e-041
gb|BU891564.1|BU891564 P052B10 Populus petioles cDNA librar... 100 6e-038
gb|CV253436.1|CV253436 WS0221.B21_O23 PTxD-ICC-A-12 Populus... 110 8e-038
gb|CF228442.1|CF228442 PtaXM0013A9A0901 Poplar cDNA library... 110 8e-038
gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA librar... 127 5e-029
gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus ... 127 9e-029
gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus t... 127 9e-029
gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus ... 127 9e-029
gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus ... 127 9e-029
gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Popul... 127 9e-029
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 126 1e-028
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 124 5e-028
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 124 5e-028
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 124 5e-028
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 124 5e-028
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 124 6e-028
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 124 6e-028
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 124 6e-028
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 124 6e-028
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 124 6e-028
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 124 6e-028
gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichoca... 123 1e-027
gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA librar... 122 3e-027
gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA librar... 122 3e-027
gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Po... 67 5e-026
gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA li... 117 5e-026
gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA libra... 117 5e-026
gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus... 117 5e-026
gb|BP932002.1|BP932002 BP932002 full-length enriched poplar... 115 4e-025
gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium... 114 7e-025
gb|BP933403.1|BP933403 BP933403 full-length enriched poplar... 113 9e-025
gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Po... 71 2e-022
gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Popul... 91 3e-022
gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus... 105 3e-022
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 87 3e-021
>gb|DT485310.1|DT485310 WS02527.B21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_N20 3', mRNA sequence
Length = 840
Score = 110 bits (234), Expect(3) = 3e-042
Identities = 39/62 (62%), Positives = 54/62 (87%)
Frame = +3 / -3
Query: 225 VVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGK 404
++W++++SVARLY+IL GV +M PVA LSW+PGFQ MQTR+LFNE FSRGL+I ++ TGK
Sbjct: 592 ILWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGK 413
Query: 405 RT 410
++
Sbjct: 412 KS 407
Score = 76.2 bits (160), Expect(2) = 2e-023
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = -3 / +3
Query: 421 QTVFVLFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNTPSSISYKRATEI 242
Q + FPV+ I RPLL SLK LVCI NPG D NATG I TP++ISY RATE
Sbjct: 396 QINYDFFPVKSWKIRRPLLNASLKRILVCIDWNPGIHDKNATGTITITPNNISYSRATET 575
Query: 241 ILSQT 227
SQ+
Sbjct: 576 TASQS 590
Score = 67.0 bits (140), Expect(3) = 3e-042
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +3 / -3
Query: 111 KFTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFI 215
+FT F+ D+FTSLLAFIPTGWG++ IAQV+RPF+
Sbjct: 703 QFTSFKFTDVFTSLLAFIPTGWGILLIAQVLRPFL 599
Score = 52.4 bits (108), Expect(2) = 2e-023
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = -2 / +2
Query: 212 EWPNYLSDRNQAPTSRNKCQKTSEDVNDLKFRELQKQNQH*HYKSDDSSLNNPVVKVLLC 33
E YL ++ AP+S +K Q+T E+++ + EL++ H K +D L++P+V V C
Sbjct: 602 EGAKYLGNQ*NAPSSGDKSQQTCENISKFERCELKQGYNHKDAKHNDQKLDHPIVDVFFC 781
Query: 32 GILVSSL 12
ILV +
Sbjct: 782 SILVPGI 802
Score = 33.1 bits (66), Expect(3) = 3e-042
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +3 / -3
Query: 15 ARDKYAAKQHLYYR 56
AR+KYAAK+H+YYR
Sbjct: 799 ARNKYAAKEHIYYR 758
>gb|CF233701.1|CF233701 PtaJXO0026F5F0511 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 654
Score = 110 bits (234), Expect(3) = 5e-041
Identities = 39/62 (62%), Positives = 54/62 (87%)
Frame = +3 / +1
Query: 225 VVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGK 404
++W++++SVARLY+IL GV +M PVA LSW+PGFQ MQTR+LFNE FSRGL+I ++ TGK
Sbjct: 202 ILWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGK 381
Query: 405 RT 410
++
Sbjct: 382 KS 387
Score = 76.2 bits (160), Expect(2) = 1e-022
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = -3 / -2
Query: 421 QTVFVLFPVRIRDIWRPLLKPSLKSTLVCIS*NPGNQDSNATGAIMNTPSSISYKRATEI 242
Q + FPV+ I RPLL SLK LVCI NPG D NATG I TP++ISY RATE
Sbjct: 398 QINYDFFPVKSWKIRRPLLNASLKRILVCIDWNPGIHDKNATGTITITPNNISYSRATET 219
Query: 241 ILSQT 227
SQ+
Sbjct: 218 TASQS 204
Score = 67.0 bits (140), Expect(3) = 5e-041
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +3 / +1
Query: 111 KFTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFI 215
+FT F+ D+FTSLLAFIPTGWG++ IAQV+RPF+
Sbjct: 91 QFTSFKFTDVFTSLLAFIPTGWGILLIAQVLRPFL 195
Score = 50.1 bits (103), Expect(2) = 1e-022
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = -2 / -1
Query: 212 EWPNYLSDRNQAPTSRNKCQKTSEDVNDLKFRELQKQNQH*HYKSDDSSLNNPVVKVLLC 33
E YL ++ AP+S +K Q+T E+++ + +L++ H K +D L++P+V V C
Sbjct: 192 EGAEYLGNQ*NAPSSGDKSQQTCENISKFERCKLKQGYNHKDAKHNDQKLDHPIVDVFFC 13
Query: 32 GILV 21
ILV
Sbjct: 12 SILV 1
Score = 29.0 bits (57), Expect(3) = 5e-041
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 21 DKYAAKQHLYYR 56
+KYAAK+H+YYR
Sbjct: 1 NKYAAKEHIYYR 36
>gb|BU891564.1|BU891564 P052B10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 558
Score = 100 bits (214), Expect(3) = 6e-038
Identities = 36/59 (61%), Positives = 49/59 (83%)
Frame = +3 / +2
Query: 225 VVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTG 401
++W++++SVARLY+IL GV +M PVA LSW+P FQ MQT +LFNE FSRGL+I ++ TG
Sbjct: 380 ILWEAVVSVARLYDILFGVIVMVPVAFLSWMPAFQSMQTTILFNEAFSRGLRIFQLFTG 556
Score = 63.8 bits (133), Expect(3) = 6e-038
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = +3 / +2
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFI 215
T F+ D+FTSLLAFIPTGWG++ IAQV+RPF+
Sbjct: 275 TSFKFTDVFTSLLAFIPTGWGILLIAQVLRPFL 373
Score = 30.9 bits (61), Expect(3) = 6e-038
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +3 / +2
Query: 15 ARDKYAAKQHLYY 53
AR+KYAAK+H+YY
Sbjct: 173 ARNKYAAKEHIYY 211
>gb|CV253436.1|CV253436 WS0221.B21_O23 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_O23 3', mRNA sequence
Length = 741
Score = 110 bits (234), Expect(2) = 8e-038
Identities = 39/62 (62%), Positives = 54/62 (87%)
Frame = +3 / -2
Query: 225 VVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGK 404
++W++++SVARLY+IL GV +M PVA LSW+PGFQ MQTR+LFNE FSRGL+I ++ TGK
Sbjct: 590 ILWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGK 411
Query: 405 RT 410
++
Sbjct: 410 KS 405
Score = 67.0 bits (140), Expect(2) = 8e-038
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +3 / -2
Query: 111 KFTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFI 215
+FT F+ D+FTSLLAFIPTGWG++ IAQV+RPF+
Sbjct: 701 QFTSFKFTDVFTSLLAFIPTGWGILLIAQVLRPFL 597
>gb|CF228442.1|CF228442 PtaXM0013A9A0901 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 722
Score = 110 bits (234), Expect(2) = 8e-038
Identities = 39/62 (62%), Positives = 54/62 (87%)
Frame = +3 / +2
Query: 225 VVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGK 404
++W++++SVARLY+IL GV +M PVA LSW+PGFQ MQTR+LFNE FSRGL+I ++ TGK
Sbjct: 152 ILWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGK 331
Query: 405 RT 410
++
Sbjct: 332 KS 337
Score = 67.0 bits (140), Expect(2) = 8e-038
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +3 / +2
Query: 111 KFTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFI 215
+FT F+ D+FTSLLAFIPTGWG++ IAQV+RPF+
Sbjct: 41 QFTSFKFTDVFTSLLAFIPTGWGILLIAQVLRPFL 145
>gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009C11 5', mRNA sequence
Length = 826
Score = 127 bits (273), Expect = 5e-029
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = +3 / +1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
DIF +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 394 DIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIIMGLLLFTPVAFLAW 573
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P E QTR+LFN+ FSRGLQISRIL G R +
Sbjct: 574 FPFVSEFQTRMLFNQAFSRGLQISRILGGPRND 672
>gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_H14 3', mRNA sequence
Length = 677
Score = 127 bits (271), Expect = 9e-029
Identities = 49/91 (53%), Positives = 66/91 (72%)
Frame = +3 / -1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
DIF +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 482 DIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAW 303
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 302 FPFVSEFQTRMLFNQAFSRGLQISRILGGPR 210
>gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_N04 3', mRNA sequence
Length = 722
Score = 127 bits (271), Expect = 9e-029
Identities = 49/91 (53%), Positives = 66/91 (72%)
Frame = +3 / -1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
DIF +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 482 DIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAW 303
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 302 FPFVSEFQTRMLFNQAFSRGLQISRILGGPR 210
>gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 3', mRNA sequence
Length = 595
Score = 127 bits (271), Expect = 9e-029
Identities = 49/91 (53%), Positives = 66/91 (72%)
Frame = +3 / -2
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
DIF +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 483 DIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAW 304
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 303 FPFVSEFQTRMLFNQAFSRGLQISRILGGPR 211
>gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 3', mRNA sequence
Length = 735
Score = 127 bits (271), Expect = 9e-029
Identities = 49/91 (53%), Positives = 66/91 (72%)
Frame = +3 / -2
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
DIF +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 482 DIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAW 303
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 302 FPFVSEFQTRMLFNQAFSRGLQISRILGGPR 210
>gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_J09 3', mRNA sequence
Length = 834
Score = 127 bits (271), Expect = 9e-029
Identities = 49/91 (53%), Positives = 66/91 (72%)
Frame = +3 / -3
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
DIF +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 487 DIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAW 308
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 307 FPFVSEFQTRMLFNQAFSRGLQISRILGGPR 215
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 126 bits (270), Expect = 1e-028
Identities = 50/93 (53%), Positives = 67/93 (72%)
Frame = +3 / +3
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ S+LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 72 IRDVIVSILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 251
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 252 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 350
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 124 bits (266), Expect = 5e-028
Identities = 51/93 (54%), Positives = 65/93 (69%)
Frame = +3 / +3
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I DI +LAF P+GWGL+ IAQ +P I+ W S+ ++AR YEI++GV + PVA L
Sbjct: 99 IRDIIVCILAFCPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGVLLFTPVAFL 278
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 279 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 377
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 124 bits (266), Expect = 5e-028
Identities = 50/93 (53%), Positives = 66/93 (70%)
Frame = +3 / +3
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I DI +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 63 IRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 242
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 243 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 341
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 124 bits (266), Expect = 5e-028
Identities = 50/93 (53%), Positives = 66/93 (70%)
Frame = +3 / -1
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I DI +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 653 IRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 474
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 473 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 375
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 124 bits (266), Expect = 5e-028
Identities = 50/93 (53%), Positives = 66/93 (70%)
Frame = +3 / -1
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I DI +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 506 IRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 327
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 326 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 228
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 124 bits (265), Expect = 6e-028
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / -1
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 678 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 499
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 498 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 400
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 124 bits (265), Expect = 6e-028
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / -2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 678 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 499
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 498 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 400
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 124 bits (265), Expect = 6e-028
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / +2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 26 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 205
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 206 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 304
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 124 bits (265), Expect = 6e-028
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / -2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 679 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 500
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 499 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 401
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 124 bits (265), Expect = 6e-028
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / -1
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 664 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 485
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 484 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 386
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 124 bits (265), Expect = 6e-028
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / -3
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I D+ +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 681 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 502
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+W P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 501 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGPR 403
>gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G13 5', mRNA sequence
Length = 686
Score = 123 bits (263), Expect = 1e-027
Identities = 47/91 (51%), Positives = 65/91 (71%)
Frame = +3 / +1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+ +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 178 DVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAW 357
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 358 FPFVSEFQTRMLFNQAFSRGLQISRILGGHR 450
>gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 3', mRNA sequence
Length = 632
Score = 122 bits (260), Expect = 3e-027
Identities = 46/91 (50%), Positives = 65/91 (71%)
Frame = +3 / -1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+ +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 548 DVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAW 369
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G +
Sbjct: 368 FPFVSEFQTRMLFNQAFSRGLQISRILGGHK 276
>gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 5', mRNA sequence
Length = 599
Score = 122 bits (260), Expect = 3e-027
Identities = 46/91 (50%), Positives = 65/91 (71%)
Frame = +3 / +1
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+ +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA L+W
Sbjct: 85 DVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAW 264
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
P E QTR+LFN+ FSRGLQISRIL G +
Sbjct: 265 FPFVSEFQTRMLFNQAFSRGLQISRILGGHK 357
>gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 651
Score = 67.0 bits (140), Expect(3) = 5e-026
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +3 / +3
Query: 111 KFTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFI 215
+FT F+ D+FTSLLAFIPTGWG++ IAQV+RPF+
Sbjct: 450 QFTSFKFTDVFTSLLAFIPTGWGILLIAQVLRPFL 554
Score = 55.1 bits (114), Expect(3) = 5e-026
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3 / +3
Query: 225 VVWDSIISVARLYEILLGVFIMAPVALLSW 314
++W++++SVARLY+IL GV +M PVA LSW
Sbjct: 561 ILWEAVVSVARLYDILFGVIVMVPVAFLSW 650
Score = 33.1 bits (66), Expect(3) = 5e-026
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +3 / +3
Query: 15 ARDKYAAKQHLYYR 56
AR+KYAAK+H+YYR
Sbjct: 354 ARNKYAAKEHIYYR 395
>gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 117 bits (251), Expect = 5e-026
Identities = 49/93 (52%), Positives = 65/93 (69%)
Frame = +3 / +2
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
I DI +LAF+P+GWGL+ IAQ +P I+ W S+ ++AR YEI++G+ + PVA L
Sbjct: 182 IRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 361
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
+ P E QTR+LFN+ FSRGLQISRIL G R
Sbjct: 362 A*FPFVSEFQTRMLFNQAFSRGLQISRILGGPR 460
>gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 615
Score = 117 bits (251), Expect = 5e-026
Identities = 48/100 (48%), Positives = 65/100 (65%)
Frame = +3 / +1
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FT+ I D+F S LAFI TGW ++SIA + + S +WDS+ AR+Y+ +GV I
Sbjct: 142 FTDLSIPDLFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFV 321
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A LSW P Q+R+LFN+ FSRGL+IS IL G + N
Sbjct: 322 PIAFLSWFPFVSTFQSRLLFNQAFSRGLEISLILAGNKAN 441
>gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_P11 3', mRNA sequence
Length = 718
Score = 117 bits (251), Expect = 5e-026
Identities = 48/100 (48%), Positives = 65/100 (65%)
Frame = +3 / -2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FT+ I D+F S LAFI TGW ++SIA + + S +WDS+ AR+Y+ +GV I
Sbjct: 564 FTDLSIPDLFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFV 385
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A LSW P Q+R+LFN+ FSRGL+IS IL G + N
Sbjct: 384 PIAFLSWFPFVSTFQSRLLFNQAFSRGLEISLILAGNKAN 265
>gb|BP932002.1|BP932002 BP932002 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.r 3', mRNA sequence
Length = 587
Score = 115 bits (245), Expect = 4e-025
Identities = 47/100 (47%), Positives = 64/100 (64%)
Frame = +3 / -1
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FT+ I D+F S LAFI TGW ++SIA + + S +WDS+ AR+Y+ +G I
Sbjct: 569 FTDSSIPDLFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFV 390
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A LSW P Q+R+LFN+ FSRGL+IS IL G + N
Sbjct: 389 PIAFLSWFPFVSTFQSRLLFNQAFSRGLEISLILAGNKAN 270
>gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB32BPD05 3', mRNA sequence
Length = 579
Score = 114 bits (243), Expect = 7e-025
Identities = 49/92 (53%), Positives = 60/92 (65%)
Frame = +3 / -3
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+ LAF+PTGWGLI IAQ RP IE T +W +AR Y+ + V + APVA+L+W
Sbjct: 400 DLIVCCLAFLPTGWGLILIAQAARPKIEETGLWHFTRVLARAYDYGMSVVLFAPVAVLAW 221
Query: 315 LPGFQEMQTRVLFNEGFSRGLQISRILTGKRT 410
LP QTR LFNE F+R LQI IL GK+T
Sbjct: 220 LPVISAFQTRFLFNEAFNRHLQIQPILAGKKT 125
>gb|BP933403.1|BP933403 BP933403 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.r 3', mRNA sequence
Length = 620
Score = 113 bits (242), Expect = 9e-025
Identities = 47/100 (47%), Positives = 63/100 (63%)
Frame = +3 / -2
Query: 114 FTEFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMA 293
FT+ I D+F S LAFI TGW ++SIA + + S +WDS+ AR+Y+ +G I
Sbjct: 571 FTDQSIPDLFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFV 392
Query: 294 PVALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKRTN 413
P+A LSW P Q R+LFN+ FSRGL+IS IL G + N
Sbjct: 391 PIAFLSWFPFVSTFQPRLLFNQAFSRGLEISLILAGNKAN 272
>gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 426
Score = 70.7 bits (148), Expect(2) = 2e-022
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +3 / +2
Query: 135 DIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSW 314
D+ +LAF+PTGWG++ IAQ +P ++ W S+ ++AR YEI++G+ + PVA
Sbjct: 86 DVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFPRL 265
Query: 315 LP 320
+P
Sbjct: 266 VP 271
Score = 55.1 bits (114), Expect(2) = 2e-022
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3 / +3
Query: 306 LSWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
L+W P E QTR+LFN+ FSRGLQISRIL G +
Sbjct: 258 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 359
>gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_K15 3', mRNA sequence
Length = 495
Score = 91.3 bits (193), Expect(2) = 3e-022
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +3 / -3
Query: 177 GLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLFN 356
G AQ +P ++ W S+ ++AR YEI++G+ + PVA L+W P E QTR+LFN
Sbjct: 448 GCF*FAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFGSEFQTRMLFN 269
Query: 357 EGFSRGLQISRILTGKR 407
+ FSRGLQISRI G R
Sbjct: 268 QAFSRGLQISRIFGGPR 218
Score = 33.6 bits (67), Expect(2) = 3e-022
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3 / -2
Query: 141 FTSLLAFIPTGWGLISI 191
F +LAFIPTGWG++ I
Sbjct: 485 FVGILAFIPTGWGMLLI 435
>gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_B19 3', mRNA sequence
Length = 651
Score = 105 bits (224), Expect = 3e-022
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +3 / -2
Query: 159 FIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQ 338
FIPT WG++SIA +P ++ +W SI S+ARLY+ +G+ I P+A LSW P Q
Sbjct: 650 FIPTIWGILSIASAWKPVMKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQ 471
Query: 339 TRVLFNEGFSRGLQISRILTGKRTN 413
TR++FN+ FSRGL+IS IL G N
Sbjct: 470 TRLMFNQAFSRGLEISLILAGNNPN 396
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 87.2 bits (184), Expect(2) = 3e-021
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +3 / +3
Query: 174 WGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALLSWLPGFQEMQTRVLF 353
+ IA +P ++ +W SI S+ARLY+ +G+ I P+A LSW P QTR++F
Sbjct: 30879 FSFFQIASAWKPVVKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQTRLMF 31058
Query: 354 NEGFSRGLQISRILTGKRTN 413
N+ FSRGL+IS IL G N
Sbjct: 31059 NQAFSRGLEISLILAGNNPN 31118
Score = 43.2 bits (88), Expect(2) = 3e-021
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3 / +1
Query: 117 TEFQIIDIFTSLLAFIPTGWGLISIA 194
TE + DIF S+LAFIPT WG++S++
Sbjct: 30100 TELSVSDIFASILAFIPTIWGILSVS 30177
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 323,048,888
Number of Sequences: 369679
Number of extensions: 4526990
Number of successful extensions: 45139
Number of sequences better than 1.0e-020: 44
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8468221807
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)