TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.3
(1548 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Popu... 165 1e-059
gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Popul... 149 3e-049
gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA librar... 144 3e-049
gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA li... 139 8e-047
gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Libra... 140 7e-039
gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Librar... 135 7e-039
gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Librar... 142 9e-038
gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal libra... 103 4e-037
gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA li... 100 4e-036
gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Po... 133 2e-035
gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Po... 133 4e-035
gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Librar... 137 4e-034
gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus ... 85 1e-033
gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Libra... 141 1e-033
gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Popul... 134 5e-033
gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Po... 120 1e-031
gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Po... 133 4e-030
gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, compl... 79 2e-029
gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Popu... 117 4e-028
gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus... 76 6e-028
gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus ... 108 9e-027
gb|CN517286.1|CN517286 GQ0093.B3_N07 GQ009 Populus trichoca... 98 7e-025
>gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 3', mRNA sequence
Length = 891
Score = 165 bits (355), Expect(3) = 1e-059
Identities = 69/139 (49%), Positives = 90/139 (64%)
Frame = -3 / -1
Query: 1030 NCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIH 851
+C SL N+ I G+ LNS+ FH+ I C+NV + V V A GDSPNTDGIH
Sbjct: 855 DCPSGATSLEFSNSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIH 676
Query: 850 IGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDV 671
+ S+ VTI ++ IG GDDC+SIGPG+ + I V CGPGHGIS+GSLG+ E V++V
Sbjct: 675 VQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNV 496
Query: 670 QVTGCTIAGTTNGLRIKSY 614
V T GT NG+RIK++
Sbjct: 495 TVKTTTFTGTENGVRIKTW 439
Score = 80.3 bits (169), Expect(3) = 1e-059
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = -3 / -1
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 410
A L++ M NV PI+IDQ YCP S V ++DV +++IHG+S T A+
Sbjct: 417 ARNILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKF 238
Query: 409 NCANNLPCQGVQLVNVDIKYN 347
+C+ PC G++L +V + YN
Sbjct: 237 DCSKTNPCSGIKLEDVKLTYN 175
Score = 24.4 bits (47), Expect(3) = 1e-059
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3 / -1
Query: 361 DIKYNGSGNKTMAVCKNAIGKSIGLAKELACI* 263
D+K + A C NA G + G+ + +C+*
Sbjct: 195 DVKLTYNNQPAEASCSNAGGVASGVVQPTSCL* 97
>gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 5', mRNA sequence
Length = 886
Score = 149 bits (321), Expect(3) = 3e-049
Identities = 63/129 (48%), Positives = 81/129 (62%)
Frame = -3 / +3
Query: 1030 NCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIH 851
+C SL N+ I G+ LNS+ FH+ I C+NV + V V A GDSPNTDGIH
Sbjct: 498 DCPSGATSLEFSNSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIH 677
Query: 850 IGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDV 671
+ S+ VTI ++ IG GDDC+SIGPG+ + I V CGPGHGIS+GSLG+ E V++V
Sbjct: 678 VQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNV 857
Query: 670 QVTGCTIAG 644
V T G
Sbjct: 858 TVKTTTFTG 884
Score = 58.8 bits (122), Expect(3) = 3e-049
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = -3 / +3
Query: 1363 IAQLGAKGDGKSDSTPMILKAWKNACEATGVQKIVIPPGNYLTGGLELKGPCKSSIII 1190
+ GA DGK+DST AW AC +T + +P G++ G + +GPCK++ I+
Sbjct: 165 VLSYGAMPDGKTDSTKAFAAAWSQACASTQPATVSVPKGSFALGQVRFQGPCKNNAIL 338
Score = 26.7 bits (52), Expect(3) = 3e-049
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 1090 GTIDGQGALVWS 1055
GT+DGQGA +WS
Sbjct: 444 GTLDGQGAGLWS 479
>gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 728
Score = 144 bits (308), Expect(2) = 3e-049
Identities = 55/130 (42%), Positives = 86/130 (66%)
Frame = -3 / +3
Query: 967 ITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCI 788
+ + N++ H++ + +VL+ +TV +P +SPNTDGIHI + N+ I+ + IG GDDCI
Sbjct: 3 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 182
Query: 787 SIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYED 608
SI GS ++ G+ CGPGHGIS+GSLG + + V +V V G ++GT NG+RIK+++
Sbjct: 183 SIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAKLSGTANGVRIKTWQG 362
Query: 607 SKSSLKASKF 578
++ KF
Sbjct: 363 GSGNVSNIKF 392
Score = 73.0 bits (153), Expect(2) = 3e-049
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = -3 / +3
Query: 586 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 407
S ++ I M+ V+ PIIIDQ YC + + S + V +VV+KNI GTS + A+ +
Sbjct: 378 SNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRFD 557
Query: 406 CANNLPCQGVQLVNVDIKYNG 344
C+ PCQG+ L +++++ G
Sbjct: 558 CSKAYPCQGILLQDINLERAG 620
>gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 5', mRNA sequence
Length = 820
Score = 139 bits (298), Expect(2) = 8e-047
Identities = 54/130 (41%), Positives = 85/130 (65%)
Frame = -3 / +2
Query: 967 ITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCI 788
+ + N++ H++ + +VL+ +TV +P +SPNTDGIHI + N+ I+ + IG GDDCI
Sbjct: 5 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 184
Query: 787 SIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYED 608
SI GS ++ G+ CGPGHGIS+GSL + + V +V V G ++GT NG+RIK+++
Sbjct: 185 SIVSGSHNVQAKGITCGPGHGISIGSL*VHDSKDHVSEVTVNGAKLSGTANGVRIKTWQG 364
Query: 607 SKSSLKASKF 578
++ KF
Sbjct: 365 GSGNVSNIKF 394
Score = 69.3 bits (145), Expect(2) = 8e-047
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = -3 / +2
Query: 586 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 407
S ++ I M+ V+ PIIIDQ YC + + S + V +VV+KNI GTS + A+ +
Sbjct: 380 SNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRFD 559
Query: 406 CANNLPCQGVQLVNVDIKYNG 344
C+ PCQ + L +++++ G
Sbjct: 560 CSKAYPCQRILLQDINLERAG 622
>gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 689
Score = 140 bits (300), Expect(2) = 7e-039
Identities = 60/122 (49%), Positives = 81/122 (66%)
Frame = -3 / -2
Query: 1030 NCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIH 851
NC +L N++I G+ LNS+ FH+ I C+NV + V V A GDSPNTDGIH
Sbjct: 370 NCPAGATTLSFVNSNNIKIDGLLSLNSQMFHIAINGCQNVRVQGVRVIAAGDSPNTDGIH 191
Query: 850 IGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDV 671
+ S++V I +++ GDDCISIGPG+K + I V+CGPGHGIS+GSL + DE V++V
Sbjct: 190 VQLSTDVAIMNSSTKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNV 11
Query: 670 QV 665
V
Sbjct: 10 TV 5
Score = 45.1 bits (92), Expect(2) = 7e-039
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = -3 / -2
Query: 1339 DGKSDSTPMILKAWKNACEATGVQKIVIPPGNYLTGGLELKG 1214
+GK DST L AW AC +T I IP G YL G + G
Sbjct: 682 NGKXDSTQAFLDAWTAACGSTDPTMIXIPKGRYLLGSVAFTG 557
>gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 695
Score = 135 bits (289), Expect(2) = 7e-039
Identities = 59/120 (49%), Positives = 80/120 (66%)
Frame = -3 / +1
Query: 1030 NCKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIH 851
NC +L N++I G+ LNS+ FH+ I +NV + V V A GDSPNTDGIH
Sbjct: 334 NCPAGATTLSFVNSNNIKIDGLLSLNSQMFHIVINGRQNVRVQGVRVIAAGDSPNTDGIH 513
Query: 850 IGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDV 671
+ S++V I +++I GDDCISIGPG+K + I V+CGPGHGIS+GSL + DE V++V
Sbjct: 514 VQLSTDVAIMNSSIKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNV 693
Score = 50.1 bits (103), Expect(2) = 7e-039
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = -3 / +1
Query: 1351 GAKGDGKSDSTPMILKAWKNACEATGVQKIVIPPGNYLTGGLELKG 1214
GA+ +GK+DST L AW AC +T I IP G YL G + G
Sbjct: 10 GARPNGKTDSTQAFLDAWTAACGSTDPTMIYIPKGRYLLGSVAFTG 147
>gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 644
Score = 142 bits (304), Expect(3) = 9e-038
Identities = 62/146 (42%), Positives = 88/146 (60%)
Frame = -3 / -1
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C+ P +L +D + V+I G+T+ NS+ H I +V + V V AP DSPNTDGIHI
Sbjct: 440 CRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTDGIHI 261
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
S+NV + IG GDDC+SI GS I++ + CGPG GIS+GSLG+ V V
Sbjct: 260 TGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMVTKVV 81
Query: 667 VTGCTIAGTTNGLRIKSYEDSKSSLK 590
+ + TTNGLRIK+++ + ++
Sbjct: 80 LDTAFLRETTNGLRIKTWQGGRGYVR 3
Score = 29.0 bits (57), Expect(3) = 9e-038
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3 / -1
Query: 1141 RNWIEIENVENLSINGHGTIDGQGALVWSKN 1049
R W+ + + G+G IDG G+ W+ +
Sbjct: 557 RLWLYFSKLNGVLFQGNGVIDGSGSKWWASS 465
Score = 25.4 bits (49), Expect(3) = 9e-038
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3 / -1
Query: 1216 GPCKSSIIIRLDGNLLGTGDLSAYQRN 1136
GPC +II++DG ++ + + N
Sbjct: 644 GPCADRLIIQIDGTIVAPDEPKNWDPN 564
>gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 736
Score = 103 bits (219), Expect(2) = 4e-037
Identities = 40/91 (43%), Positives = 59/91 (64%)
Frame = -3 / +2
Query: 850 IGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDV 671
I + N+ I+ + IG GDDCISI GS ++ G+ CGPGHGIS+GSLG + + V V
Sbjct: 5 ITKTQNIQITDSVIGTGDDCISIVSGSHHVQATGITCGPGHGISIGSLGAHDSKDHVSGV 184
Query: 670 QVTGCTIAGTTNGLRIKSYEDSKSSLKASKF 578
V+G ++GT NG+RIK+++ ++ KF
Sbjct: 185 TVSGAKLSGTANGVRIKTWQGGSGNVSNIKF 277
Score = 73.0 bits (153), Expect(2) = 4e-037
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = -3 / +2
Query: 586 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 407
S ++ I M+ V+ PIIIDQ YC + K S + V +V++KNI GTS + A+ +
Sbjct: 263 SNIKFQNIEMNKVTNPIIIDQNYCDQDKPCKQQKSALQVKNVMYKNIKGTSASEVAMRFD 442
Query: 406 CANNLPCQGVQLVNVDIKYNG 344
C+ PCQG+ L +++++ G
Sbjct: 443 CSKAYPCQGILLQDINLERAG 505
>gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 3', mRNA sequence
Length = 768
Score = 100 bits (212), Expect(2) = 4e-036
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = -3 / -2
Query: 832 VTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCT 653
+ I+ + IG GDDCISI GS ++ G+ CGPGHGIS+GSLG + + V +V V G
Sbjct: 767 IQITDSVIGTGDDCISIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAK 588
Query: 652 IAGTTNGLRIKSYEDSKSSLKASKF 578
++GT NG+RIK+++ ++ KF
Sbjct: 587 LSGTANGVRIKTWQGGSGNVSNIKF 513
Score = 73.0 bits (153), Expect(2) = 4e-036
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = -3 / -2
Query: 586 SKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLN 407
S ++ I M+ V+ PIIIDQ YC + + S + V +VV+KNI GTS + A+ +
Sbjct: 527 SNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRFD 348
Query: 406 CANNLPCQGVQLVNVDIKYNG 344
C+ PCQG+ L +++++ G
Sbjct: 347 CSKAYPCQGILLQDINLERAG 285
>gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01032F08 5', mRNA sequence
Length = 696
Score = 133 bits (284), Expect(2) = 2e-035
Identities = 58/146 (39%), Positives = 81/146 (55%)
Frame = -3 / +3
Query: 1015 PNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSS 836
P +L T V + GIT+ NS HL C V + +P +SPNTDGIH+ +S
Sbjct: 243 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 422
Query: 835 NVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGC 656
+V I S+ + GDDC+SI G + IH V CGPGHGIS+G LGR + V +V V
Sbjct: 423 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 602
Query: 655 TIAGTTNGLRIKSYEDSKSSLKASKF 578
+ T G+RIK+++ S++ F
Sbjct: 603 AMLNTLTGVRIKTWQGGSGSVQGVTF 680
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3 / +3
Query: 1135 WIEIENVENLSINGHGTIDGQGALVWS 1055
WIE + ++I G G IDGQG++ W+
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWN 176
>gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01017H09 5', mRNA sequence
Length = 705
Score = 133 bits (284), Expect(3) = 4e-035
Identities = 58/146 (39%), Positives = 81/146 (55%)
Frame = -3 / +3
Query: 1015 PNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSS 836
P +L T V + GIT+ NS HL C V + +P +SPNTDGIH+ +S
Sbjct: 45 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 224
Query: 835 NVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGC 656
+V I S+ + GDDC+SI G + IH V CGPGHGIS+G LGR + V +V V
Sbjct: 225 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 404
Query: 655 TIAGTTNGLRIKSYEDSKSSLKASKF 578
+ T G+RIK+++ S++ F
Sbjct: 405 AMLNTLTGVRIKTWQGGSGSVQGVTF 482
Score = 28.1 bits (55), Expect(3) = 4e-035
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3 / +3
Query: 574 YEGITMDNVSYPIIIDQKYCPNNIC 500
+ I + V PI+IDQ YC + C
Sbjct: 480 FSNIQVSGVKTPIMIDQFYCDRSKC 554
Score = 26.3 bits (51), Expect(3) = 4e-035
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3 / +3
Query: 418 ITLNCANNLPCQGVQLVNVDI 356
+ L C++NLPC G+ +++
Sbjct: 630 VHLACSDNLPCTGISFSAIEL 692
>gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 579
Score = 137 bits (293), Expect(2) = 4e-034
Identities = 61/146 (41%), Positives = 87/146 (59%)
Frame = -3 / -2
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C+ P +L +D + V+I G+T+ NS+ H I +V + V V AP DSPNTDGIHI
Sbjct: 440 CRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTDGIHI 261
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
S+NV + IG GDDC+SI GS I++ + GPG GIS+GSLG+ V V
Sbjct: 260 TGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFYGPGRGISIGSLGKDNSTGMVTKVV 81
Query: 667 VTGCTIAGTTNGLRIKSYEDSKSSLK 590
+ + TTNGLRIK+++ + ++
Sbjct: 80 LDTAFLRETTNGLRIKTWQGGRGYVR 3
Score = 29.0 bits (57), Expect(2) = 4e-034
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3 / -2
Query: 1141 RNWIEIENVENLSINGHGTIDGQGALVWSKN 1049
R W+ + + G+G IDG G+ W+ +
Sbjct: 557 RLWLYFSKLNGVLFQGNGVIDGSGSKWWASS 465
>gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_M05 3', mRNA sequence
Length = 928
Score = 84.9 bits (179), Expect(2) = 1e-033
Identities = 33/64 (51%), Positives = 43/64 (67%)
Frame = -3 / -3
Query: 802 GDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRI 623
GDDCISI S I+I + CGPGHGIS+GSLG+ V DV V G ++ T NG+RI
Sbjct: 923 GDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRI 744
Query: 622 KSYE 611
K+++
Sbjct: 743 KTWQ 732
Score = 79.9 bits (168), Expect(2) = 1e-033
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = -3 / -3
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 410
A+ ++ I M+NVS PIIIDQ YC ++ + S V V ++ F+ I GTS T EAI
Sbjct: 716 ATNITFQNIFMENVSNPIIIDQYYCDAHVPCANQTSAVKVENISFRRIKGTSATEEAIKF 537
Query: 409 NCANNLPCQGVQLVNVDIKYNGSG 338
C+++LPC+G+ L +V + + G
Sbjct: 536 ACSDDLPCKGLYLEDVQLLSHTGG 465
>gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 527
Score = 141 bits (303), Expect(2) = 1e-033
Identities = 62/142 (43%), Positives = 86/142 (60%)
Frame = -3 / -1
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C+ P +L +D + V+I G+T+ NS+ H I +V + V V AP DSPNTDGIHI
Sbjct: 440 CRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSHVLVSAPEDSPNTDGIHI 261
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQ 668
S+NV + IG GDDC+SI GS I++ + CGPG GIS+GSLG+ V V
Sbjct: 260 TGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMVTKVV 81
Query: 667 VTGCTIAGTTNGLRIKSYEDSK 602
+ + TTNGLRIK+++ +
Sbjct: 80 LDTAFLRETTNGLRIKTWQGGR 15
Score = 23.1 bits (44), Expect(2) = 1e-033
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3 / -1
Query: 1096 GHGTIDGQGALVWSKN 1049
G+G IDG G+ W+ +
Sbjct: 512 GNGVIDGSGSKWWASS 465
>gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 5', mRNA sequence
Length = 802
Score = 134 bits (287), Expect(2) = 5e-033
Identities = 56/137 (40%), Positives = 79/137 (57%)
Frame = -3 / +3
Query: 988 TNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTI 809
T V + GIT+ NS HL +C V + +P +SPNTDGIH+ +S +V I S+ +
Sbjct: 15 TRVIVTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDL 194
Query: 808 GVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGL 629
GDDC+SI G + IH V CGPGHGIS+G LGR + V +V V + T G+
Sbjct: 195 ACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGV 374
Query: 628 RIKSYEDSKSSLKASKF 578
RIK+++ S++ F
Sbjct: 375 RIKTWQGGSGSVQGVTF 425
Score = 28.1 bits (55), Expect(2) = 5e-033
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3 / +3
Query: 574 YEGITMDNVSYPIIIDQKYCPNNIC 500
+ I + V PI+IDQ YC + C
Sbjct: 423 FSNIQVSGVKTPIMIDQFYCDRSKC 497
>gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01032C08 5', mRNA sequence
Length = 698
Score = 120 bits (257), Expect(2) = 1e-031
Identities = 53/127 (41%), Positives = 70/127 (55%)
Frame = -3 / +3
Query: 1015 PNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSS 836
P +L T V + GIT+ NS HL C V + +P +SPNTDGIH+ +S
Sbjct: 243 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 422
Query: 835 NVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGC 656
+V I S+ + GDDC+SI G + IH V CGPGHGIS+G LGR + V +V V
Sbjct: 423 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 602
Query: 655 TIAGTTN 635
+ T N
Sbjct: 603 AMLNTXN 623
Score = 37.3 bits (75), Expect(2) = 1e-031
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3 / +3
Query: 1135 WIEIENVENLSINGHGTIDGQGALVWS 1055
WIE + ++I G G IDGQG++ W+
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWN 176
>gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01023H02 5', mRNA sequence
Length = 611
Score = 133 bits (284), Expect = 4e-030
Identities = 58/146 (39%), Positives = 81/146 (55%)
Frame = -3 / +2
Query: 1015 PNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSS 836
P +L T V + GIT+ NS HL C V + +P +SPNTDGIH+ +S
Sbjct: 131 PTALRFYGSTRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSH 310
Query: 835 NVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGSLGRYKDEKDVEDVQVTGC 656
+V I S+ + GDDC+SI G + IH V CGPGHGIS+G LGR + V +V V
Sbjct: 311 DVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDV 490
Query: 655 TIAGTTNGLRIKSYEDSKSSLKASKF 578
+ T G+RIK+++ S++ F
Sbjct: 491 AMLNTLTGVRIKTWQGGSGSVQGVTF 568
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
Length = 143392
Score = 79.4 bits (167), Expect(6) = 2e-029
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = -3 / +2
Query: 1009 SLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNV 830
+L +D ++V+++G+T+ NS+ H I + +V I +V+V APGDSPNTDGIHI S+NV
Sbjct: 98669 ALTIDSSSSVKVKGLTIKNSQQMHFVISKSASVRISQVSVSAPGDSPNTDGIHITQSTNV 98848
Query: 829 TISSTTIGVG 800
+ IG G
Sbjct: 98849 VLQDCKIGTG 98878
Score = 47.3 bits (97), Expect(6) = 2e-029
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -3 / +2
Query: 802 GDDCISIGPGSKMIRIHGVKCGPGHGISVGSL 707
GDDCISI GS I++ + CGPGHG+ + S+
Sbjct: 99014 GDDCISIVNGSSGIKMKRIYCGPGHGVRLSSI 99109
Score = 35.9 bits (72), Expect(6) = 2e-029
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3 / +1
Query: 574 YEGITMDNVSYPIIIDQKYC 515
+E + MDNV PIIIDQ YC
Sbjct: 99544 FENVRMDNVDNPIIIDQFYC 99603
Score = 35.0 bits (70), Expect(6) = 2e-029
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3 / +3
Query: 1309 LKAWKNACEATGVQKIVIPPGNYLTGGLELKGPCKSSIIIRL 1184
+KAW+ AC +V +YL KGPC+ +I++
Sbjct: 98025 VKAWETACATPESVFLVPSEHHYLVNATRFKGPCEDRFVIQV 98150
Score = 34.1 bits (68), Expect(6) = 2e-029
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3 / +2
Query: 1147 YQRNWIEIENVENLSINGHGTIDGQGALVWSKN 1049
+ R W+E + + G+G IDG G+ W+ +
Sbjct: 98351 HARQWLEFSKLNGVLFQGNGVIDGSGSKWWASS 98449
Score = 33.6 bits (67), Expect(6) = 2e-029
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3 / +3
Query: 724 ISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
+S+GSLG+ V V + I+ TTNG+RIK+++
Sbjct: 99264 LSIGSLGKDNSTGIVAKVVLDTAFISETTNGVRIKTWQ 99377
>gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 3', mRNA sequence
Length = 934
Score = 117 bits (251), Expect(2) = 4e-028
Identities = 47/116 (40%), Positives = 68/116 (58%)
Frame = -3 / -2
Query: 925 ECKNVLIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGV 746
+C V + +P +SPNTDGIH+ +S +V I S+ + GDDC+SI G + IH V
Sbjct: 933 DCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGDDCVSIQTGCSQVYIHNV 754
Query: 745 KCGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYEDSKSSLKASKF 578
CGPGHGIS+G LGR + V +V V + T G+RIK+++ S++ F
Sbjct: 753 NCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTWQGGSGSVQGVTF 586
Score = 28.1 bits (55), Expect(2) = 4e-028
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3 / -2
Query: 574 YEGITMDNVSYPIIIDQKYCPNNIC 500
+ I + V PI+IDQ YC + C
Sbjct: 588 FSNIQVSGVKTPIMIDQFYCDRSKC 514
>gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_J07 3', mRNA sequence
Length = 722
Score = 76.2 bits (160), Expect(3) = 6e-028
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = -3 / -2
Query: 589 ASKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 410
A L++ M NV PI+IDQ YCP S V ++DV +++IHG+S T A+
Sbjct: 571 ARNILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKF 392
Query: 409 NCANNLPCQGVQLVNVDIKYN 347
+C+ PC G++L +V + N
Sbjct: 391 DCSKTNPCSGIKLEDVKLTCN 329
Score = 62.5 bits (130), Expect(3) = 6e-028
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = -3 / -2
Query: 742 CGPGHGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSY 614
CGPGHGIS+GSLG+ E V++V V T GT NG+RIK++
Sbjct: 721 CGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTENGVRIKTW 593
Score = 24.4 bits (47), Expect(3) = 6e-028
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3 / -2
Query: 361 DIKYNGSGNKTMAVCKNAIGKSIGLAKELACI* 263
D+K + A C NA G + G+ + +C+*
Sbjct: 349 DVKLTCNNQPAEASCSNAGGVASGVVQPTSCL* 251
>gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H13 3', mRNA sequence
Length = 937
Score = 108 bits (231), Expect(2) = 9e-027
Identities = 46/100 (46%), Positives = 65/100 (65%)
Frame = -3 / -2
Query: 910 LIDKVTVKAPGDSPNTDGIHIGDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPG 731
LI K+++ +P SPNTDGIHI ++ V I + I GDDCISIG G + I G+ CGP
Sbjct: 936 LIKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPS 757
Query: 730 HGISVGSLGRYKDEKDVEDVQVTGCTIAGTTNGLRIKSYE 611
HGIS+GSLG + + V ++ V I + +GLRIK+++
Sbjct: 756 HGISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTWQ 637
Score = 32.7 bits (65), Expect(2) = 9e-027
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3 / -2
Query: 574 YEGITMDNVSYPIIIDQKYCPNNIC 500
+E I M+NV IIIDQ YC + C
Sbjct: 606 FENIQMENVRNCIIIDQYYCLSKAC 532
>gb|CN517286.1|CN517286 GQ0093.B3_N07 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_N07 5', mRNA sequence
Length = 475
Score = 98.2 bits (208), Expect(2) = 7e-025
Identities = 39/106 (36%), Positives = 59/106 (55%)
Frame = -3 / +3
Query: 1027 CKILPNSLVLDFVTNVQIRGITLLNSKFFHLNIFECKNVLIDKVTVKAPGDSPNTDGIHI 848
C+ P ++ ++++ + ++ + H+ C V+ + V +P SPNTDGIHI
Sbjct: 120 CRNAPTAITFHKCKDLKVENLKVVCGQKMHVAFTNCLRVMTFNLIVTSPAVSPNTDGIHI 299
Query: 847 GDSSNVTISSTTIGVGDDCISIGPGSKMIRIHGVKCGPGHGISVGS 710
S V I + + GDDCISI S I+I + CGPGHGIS+GS
Sbjct: 300 SASHGVKIKDSVVRTGDDCISIVSNSSRIKIXXIACGPGHGISIGS 437
Score = 36.8 bits (74), Expect(2) = 7e-025
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = -3 / +3
Query: 1141 RNWIEIENVENLSINGHGTIDGQGALVWSKN 1049
R W+ V++L++ G GT++G+G L W+++
Sbjct: 3 RKWLYFHGVKHLTVEGGGTVNGRGWLWWAQS 95
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 502,465,828
Number of Sequences: 369679
Number of extensions: 5944303
Number of successful extensions: 38470
Number of sequences better than 1.0e-020: 25
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 22054342342
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)