TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115147.2.2
(1310 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU891980.1|BU891980 P057G11 Populus petioles cDNA librar... 144 4e-058
gb|CF233090.1|CF233090 PtaJXO0019C11C1105 Poplar cDNA libra... 140 2e-055
gb|CV270799.1|CV270799 WS0152.B21_P12 PTxN-IB-A-6 Populus t... 171 6e-055
gb|CK091865.1|CK091865 F131P05.3pR Populus flower cDNA libr... 135 3e-052
gb|BU865435.1|BU865435 S053F05 Populus imbibed seed cDNA li... 152 2e-046
gb|DT511044.1|DT511044 WS02429.BR_G12 PTxD-ICC-N-A-14 Popul... 171 4e-045
gb|DV466407.1|DV466407 MTUNUL1.P50.C01 NUL Populus fremonti... 169 2e-044
gb|CV255572.1|CV255572 WS02414.B21_G08 PTxD-ICC-N-A-14 Popu... 105 1e-042
gb|DV466264.1|DV466264 MTUNUL1.P49.D05 NUL Populus fremonti... 150 6e-039
gb|BI070884.1|BI070884 C046P60U Populus strain T89 leaves P... 138 1e-036
gb|DT515744.1|DT515744 WS02429.B21.1_G12 PTxD-ICC-N-A-14 Po... 68 2e-034
gb|CF236289.1|CF236289 PtaJXT11A3A0301 Poplar cDNA library ... 66 5e-032
gb|CK090489.1|CK090489 F008P48.3pR Populus flower cDNA libr... 73 9e-031
gb|BU893747.1|BU893747 P081G11 Populus petioles cDNA librar... 84 3e-029
gb|DV464403.1|DV464403 MTUNUL1.P27.A10 NUL Populus fremonti... 110 8e-027
>gb|BU891980.1|BU891980 P057G11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 689
Score = 144 bits (309), Expect(3) = 4e-058
Identities = 56/83 (67%), Positives = 65/83 (78%)
Frame = +1 / +1
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G K GQAVA+R+ GTK YNC+ G QDTLYDHKGLHYF C I+GSVDFIFG GRSFY
Sbjct: 382 GTKQGQAVALRISGTKAAFYNCSFSGNQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSFY 561
Query: 757 EDCRIESVVKEVAVLTAQQRSKS 825
E+C + S+ K+VA LTAQ+RS S
Sbjct: 562 ENCHLNSIAKKVASLTAQKRSNS 630
Score = 86.3 bits (182), Expect(3) = 4e-058
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
+REK+F+ + PF+TF D +P + NDTA+ +GKDGKP+ T SAT+AV+++YF A
Sbjct: 166 YREKIFIPRTVPFVTFLGDSSEPPTITGNDTASVSGKDGKPLRTYQSATVAVDANYFVAI 345
Query: 538 GVVFRNDAP 564
+ F N AP
Sbjct: 346 NMKFENTAP 372
Score = 79.9 bits (168), Expect(3) = 1e-025
Identities = 45/83 (54%), Positives = 53/83 (63%)
Frame = -1 / -1
Query: 824 DLERCCAVSTATSLTTDSMRQSS*KLRPKPKMKSTLPRMRQPLK*CRPLWSYSVSCPPSM 645
+L R AV AT L + Q S*K P+PK+KST P M+Q LK* RPLWSY VS P
Sbjct: 629 ELLRF*AVRDATFLAMEFKWQFS*KDLPEPKIKSTEP*MKQLLK**RPLWSYRVS*FPEK 450
Query: 644 VQL*ICVLVPNSRTATAWPPLAP 576
+QL* LVP+ R+ATA P L P
Sbjct: 449 LQL*NAALVPDIRSATACPCLVP 381
Score = 50.6 bits (104), Expect(3) = 1e-025
Identities = 31/75 (41%), Positives = 35/75 (46%)
Frame = -1 / -1
Query: 587 PLAPGLASGASFRNTTPYAVK*SDSTASVALPTVPTGLPSLPFVAAVSFQTTTAGFLGSD 408
P + GA F N A K* STA+VAL V G PS P AVS G L S
Sbjct: 395 PCLVPITCGAVFSNFMLMATK*FASTATVAL*YVLNGFPSFPETEAVSLPVIVGGSLESP 216
Query: 407 RNVMNGLLMFRNSFS 363
RNV G ++ FS
Sbjct: 215 RNVTKGTVLGIKIFS 171
Score = 34.1 bits (68), Expect(3) = 4e-058
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1 / +1
Query: 274 YTNITAALEDIPVSNTKRVILDLKPG 351
+ IT A+ IP NT+RVI+ +KPG
Sbjct: 85 FKTITEAINSIPPYNTRRVIVAIKPG 162
Score = 24.4 bits (47), Expect(3) = 1e-025
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1 / -1
Query: 350 PGLRSRITRLVLLTGISSSAAVMLV 276
PGL + IT LVL G+ A+VM++
Sbjct: 161 PGLIATITLLVLYGGMLLIASVMVL 87
>gb|CF233090.1|CF233090 PtaJXO0019C11C1105 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 140 bits (300), Expect(4) = 2e-055
Identities = 55/83 (66%), Positives = 64/83 (77%)
Frame = +1 / +3
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G K GQAVA+R+ GTK YNC+ G QDTLYDHKGLHYF C I+GSVDFIFG GRSFY
Sbjct: 57 GTKQGQAVALRISGTKAAFYNCSFFGNQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSFY 236
Query: 757 EDCRIESVVKEVAVLTAQQRSKS 825
E+C + S+ +VA LTAQ+RS S
Sbjct: 237 ENCHLNSIATKVASLTAQKRSNS 305
Score = 62.0 bits (129), Expect(4) = 2e-055
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +1 / +3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIY 1023
G IYLGRAWGD SRV++SYT M + ++P GW+ W + +S Y
Sbjct: 354 GLIYLGRAWGDYSRVIFSYTFMDKIILPQGWNDWGDXRRDSRVYY 488
Score = 36.8 bits (74), Expect(4) = 2e-055
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYV 1140
G A RV WA LT+ A PF+GT+YV
Sbjct: 507 GPGANLTGRVAWARVLTDEXAXPFIGTYYV 596
Score = 34.5 bits (69), Expect(4) = 2e-055
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 1012 SGIYYGEFKCFGPGAD 1059
S +YYGE+KC GPGA+
Sbjct: 474 SRVYYGEYKCTGPGAN 521
>gb|CV270799.1|CV270799 WS0152.B21_P12 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0152_P12 3', mRNA sequence
Length = 841
Score = 171 bits (368), Expect(3) = 6e-055
Identities = 73/158 (46%), Positives = 92/158 (58%)
Frame = +1 / -3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + K FIT +V W DTA T G G+P+GT SAT AV S +F A
Sbjct: 833 YKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAK 654
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ F+N APL PGA G QAVA+R+ C G QDTLYDH G HY+K C I G
Sbjct: 653 NITFKNTAPLPAPGAMGQQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEG 474
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
SVDFIFG G S +E C + ++ + LTAQ RS +E
Sbjct: 473 SVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRSSLLE 360
Score = 55.6 bits (115), Expect(3) = 6e-055
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / -3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 317 GALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNW 216
Score = 27.2 bits (53), Expect(3) = 6e-055
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 841 DTGFSFKNCSIGG 879
DTGFSF NC + G
Sbjct: 359 DTGFSFVNCKVTG 321
>gb|CK091865.1|CK091865 F131P05.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F131P05 3', mRNA sequence
Length = 760
Score = 135 bits (290), Expect(5) = 3e-052
Identities = 58/111 (52%), Positives = 67/111 (60%)
Frame = +1 / -1
Query: 499 ATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDH 678
AT AV S YF A + F+N APL GA G QAVA+R+ +C G QDTLYDH
Sbjct: 760 ATFAVNSPYFIAKDITFKNKAPLPPSGALGKQAVALRISADTAAFISCKFIGAQDTLYDH 581
Query: 679 KGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
G HYFK C I GSVDFIFG G S YEDC + +V LTAQ+R +E
Sbjct: 580 IGRHYFKKCYIEGSVDFIFGNGLSLYEDCHLHAVTTSFGALTAQKRQSFLE 428
Score = 52.4 bits (108), Expect(5) = 3e-052
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +1 / -1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G ++LGRAWG+ SRVV++YT M + + P GW W
Sbjct: 385 GALFLGRAWGNFSRVVFAYTFMDKIITPRGWYDW 284
Score = 38.2 bits (77), Expect(5) = 3e-052
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1 / -1
Query: 1075 RVGWALDLTEAQAKPFVGTHYVLGDTWI 1158
RV W+ +LT+ QAKPF+ ++ G W+
Sbjct: 208 RVAWSRELTDQQAKPFISIGFIDGHEWL 125
Score = 31.3 bits (62), Expect(5) = 3e-052
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1 / -1
Query: 1000 KPESSGIYYGEFKCFGPGAD 1059
K +++G++KC GPGAD
Sbjct: 277 KSRQMTVFFGQYKCSGPGAD 218
Score = 23.1 bits (44), Expect(5) = 3e-052
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 841 DTGFSFKNCSIGG 879
+TGFSF +C + G
Sbjct: 427 ETGFSFVSCKVTG 389
>gb|BU865435.1|BU865435 S053F05 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 633
Score = 152 bits (327), Expect(3) = 2e-046
Identities = 65/129 (50%), Positives = 78/129 (60%)
Frame = +1 / +3
Query: 445 DTAATNGKDGKPVGTVGSATLAVESDYFTAYGVVFRNDAPLAKPGAKGGQAVAVRLFGTK 624
D A ++G+P+GT SAT AV S YF A + F+N APL GA G QAVA+R+
Sbjct: 81 DDTADRMENGRPLGTFDSATFAVNSPYFIAKDITFKNKAPLPPSGALGKQAVALRISADT 260
Query: 625 TQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLT 804
+C G QDTLYDH G HYFK C I GSVDFIFG G S YEDC + +V LT
Sbjct: 261 AAFISCKFIGAQDTLYDHIGRHYFKKCYIEGSVDFIFGNGLSLYEDCHLHAVTNSFGALT 440
Query: 805 AQQRSKSIE 831
AQ+R +E
Sbjct: 441 AQKRQSFLE 467
Score = 50.1 bits (103), Expect(3) = 2e-046
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1 / +3
Query: 895 IYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
++LGRAWG+ SRVV++YT M + + P GW W
Sbjct: 516 LFLGRAWGNFSRVVFAYTFMDKIITPRGWYDW 611
Score = 23.1 bits (44), Expect(3) = 2e-046
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 841 DTGFSFKNCSIGG 879
+TGFSF +C + G
Sbjct: 468 ETGFSFVSCKVTG 506
>gb|DT511044.1|DT511044 WS02429.BR_G12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_G12 5', mRNA sequence
Length = 854
Score = 171 bits (368), Expect(2) = 4e-045
Identities = 73/158 (46%), Positives = 92/158 (58%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + K FIT +V W DTA T G G+P+GT SAT AV S +F A
Sbjct: 356 YKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAK 535
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ F+N APL PGA G QAVA+R+ C G QDTLYDH G HY+K C I G
Sbjct: 536 NITFKNTAPLPAPGAMGQQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEG 715
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
SVDFIFG G S +E C + ++ + LTAQ RS +E
Sbjct: 716 SVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRSSLLE 829
Score = 31.3 bits (62), Expect(2) = 4e-045
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1 / +2
Query: 268 GDYTNITAALEDIPVSNTKRVILDLKPG 351
GD+T I A++ +P N RVI+ ++ G
Sbjct: 269 GDFTTIQEAIDSLPFINLVRVIIKIRAG 352
>gb|DV466407.1|DV466407 MTUNUL1.P50.C01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 892
Score = 169 bits (363), Expect(2) = 2e-044
Identities = 72/154 (46%), Positives = 90/154 (58%)
Frame = +1 / +3
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + K FIT +V W DTA T G G+P+GT SAT AV S +F A
Sbjct: 426 YKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAK 605
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ F+N APL PGA G QAVA+R+ C G QDTLYDH G HY+K C I G
Sbjct: 606 NITFKNTAPLPAPGAMGRQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEG 785
Query: 718 SVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRS 819
SVDFIFG G S +E C + ++ + LTAQ RS
Sbjct: 786 SVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRS 887
Score = 31.3 bits (62), Expect(2) = 2e-044
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1 / +3
Query: 268 GDYTNITAALEDIPVSNTKRVILDLKPG 351
GD+T I A++ +P N RVI+ ++ G
Sbjct: 339 GDFTTIQEAIDSLPFINLVRVIIKIRAG 422
>gb|CV255572.1|CV255572 WS02414.B21_G08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_G08 3', mRNA sequence
Length = 729
Score = 105 bits (224), Expect(4) = 1e-042
Identities = 44/91 (48%), Positives = 51/91 (56%)
Frame = +1 / -3
Query: 559 APLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFG 738
AP PG KG QA A R+ G K C G QDTL D G HYFK C I GS+DFIFG
Sbjct: 727 APAPMPGMKGWQAAAFRISGDKAYFAGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFG 548
Query: 739 FGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
GRS Y+DC + S+ + AQ R+ E
Sbjct: 547 NGRSMYKDCELHSIATRFGSIAAQDRNSPDE 455
Score = 73.5 bits (154), Expect(4) = 1e-042
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +1 / -3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYYGEFKCFGPGADA 1062
G +Y+GRA G SR+VYSYT V GWD W A ++ +++G +KC+GPGA A
Sbjct: 412 GPLYVGRAMGQYSRIVYSYTYFDNVVAHGGWDDWDHASNKNKTVFFGVYKCWGPGAAA 239
Score = 28.6 bits (56), Expect(4) = 1e-042
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1 / -3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQP 1164
G A + V WA +L A F+ +V G WI P
Sbjct: 256 GPGAAAVQGVSWARELDYESAHKFLAKSFVNGRHWIAP 143
Score = 22.6 bits (43), Expect(4) = 1e-042
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 844 TGFSFKNCSIGG 879
TGF+F NC + G
Sbjct: 451 TGFAFLNCRVTG 416
>gb|DV466264.1|DV466264 MTUNUL1.P49.D05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 808
Score = 150 bits (323), Expect(2) = 6e-039
Identities = 64/138 (46%), Positives = 79/138 (57%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + K FIT +V W DTA T G G+P+GT SAT AV S +F A
Sbjct: 391 YKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAK 570
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRG 717
+ F+N APL PGA G QAVA+R+ C G QDTLYDH G HY + C I G
Sbjct: 571 NITFKNTAPLPAPGAMGRQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYLQDCYIEG 750
Query: 718 SVDFIFGFGRSFYEDCRI 771
SVDFIFG G S + C +
Sbjct: 751 SVDFIFGNGLSLFXGCHV 804
Score = 31.3 bits (62), Expect(2) = 6e-039
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 268 GDYTNITAALEDIPVSNTKRVILDLKPG 351
GD+T I A++ +P N RVI+ ++ G
Sbjct: 304 GDFTTIQEAIDSLPFINLVRVIIKIRAG 387
>gb|BI070884.1|BI070884 C046P60U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 340
Score = 138 bits (297), Expect(2) = 1e-036
Identities = 53/81 (65%), Positives = 63/81 (77%)
Frame = +1 / +2
Query: 577 GAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDHKGLHYFKGCLIRGSVDFIFGFGRSFY 756
G K GQAVA+R+ GTK YNC+ G QDTLYDHKGLHYF C I+GS DFIFG GR+FY
Sbjct: 98 GTKQGQAVALRISGTKAAFYNCSFSGNQDTLYDHKGLHYFNNCFIQGSXDFIFGSGRAFY 277
Query: 757 EDCRIESVVKEVAVLTAQQRS 819
E+C + S+ K+VA LTAQ+RS
Sbjct: 278 ENCHLNSIAKKVASLTAQKRS 340
Score = 35.4 bits (71), Expect(2) = 1e-036
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1 / +2
Query: 478 PVGTVGSATLAVESDYFTAYGVVFRNDAP 564
P+ T SAT+AV+++YF A + F N AP
Sbjct: 2 PLRTYQSATVAVDANYFVAINMKFENTAP 88
>gb|DT515744.1|DT515744 WS02429.B21.1_G12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_G12 3', mRNA sequence
Length = 712
Score = 68.0 bits (142), Expect(5) = 2e-034
Identities = 26/52 (50%), Positives = 33/52 (63%)
Frame = +1 / -1
Query: 676 HKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
H G HY+K C I GSVDFIFG G S +E C + ++ + LTAQ RS +E
Sbjct: 712 HVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRSSLLE 557
Score = 55.6 bits (115), Expect(5) = 2e-034
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / -1
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 514 GALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNW 413
Score = 39.1 bits (79), Expect(5) = 2e-034
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1 / -1
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A RV W+ +LT+++AKPF ++ G WI+
Sbjct: 361 GPGASFAGRVSWSRELTDSEAKPFTSLTFIDGSEWIK 251
Score = 29.9 bits (59), Expect(5) = 2e-034
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / -1
Query: 1018 IYYGEFKCFGPGA 1056
++YG++KC GPGA
Sbjct: 388 VFYGQYKCTGPGA 350
Score = 27.2 bits (53), Expect(5) = 2e-034
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 841 DTGFSFKNCSIGG 879
DTGFSF NC + G
Sbjct: 556 DTGFSFVNCKVTG 518
>gb|CF236289.1|CF236289 PtaJXT11A3A0301 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 527
Score = 65.7 bits (137), Expect(5) = 5e-032
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +1 / +3
Query: 676 HKGLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
H G HY+K C GSVDFIFG G S +E C + ++ + LTAQ RS +E
Sbjct: 12 HVGRHYYKDCYXEGSVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRSSLLE 167
Score = 55.6 bits (115), Expect(5) = 5e-032
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1 / +3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGW 990
G +YLGRAWG SRVV++YT M ++P GW W
Sbjct: 210 GALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNW 311
Score = 32.7 bits (65), Expect(5) = 5e-032
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1 / +3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQ 1161
G A RV W+ +LT+++ P ++ G WI+
Sbjct: 363 GPGASFAXRVSWSXELTDSEXXPXTSLTFIDGSXWIK 473
Score = 29.9 bits (59), Expect(5) = 5e-032
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 1018 IYYGEFKCFGPGA 1056
++YG++KC GPGA
Sbjct: 336 VFYGQYKCTGPGA 374
Score = 27.2 bits (53), Expect(5) = 5e-032
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 841 DTGFSFKNCSIGG 879
DTGFSF NC + G
Sbjct: 168 DTGFSFVNCKVTG 206
>gb|CK090489.1|CK090489 F008P48.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F008P48 3', mRNA sequence
Length = 730
Score = 73.5 bits (154), Expect(4) = 9e-031
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +1 / -3
Query: 889 GQIYLGRAWGDSSRVVYSYTKMGEEVVPVGWDGWQIAKPESSGIYYGEFKCFGPGADA 1062
G +Y+GRA G SR+VYSYT V GWD W A ++ +++G +KC+GPGA A
Sbjct: 536 GPLYVGRAMGQYSRIVYSYTYFDNVVAHGGWDDWDHASNKNKTVFFGVYKCWGPGAAA 363
Score = 66.6 bits (139), Expect(4) = 9e-031
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +1 / -3
Query: 682 GLHYFKGCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRSKSIE 831
G HYFK C I GS+DFIFG GRS Y+DC + S+ + AQ R+ E
Sbjct: 728 GRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDE 579
Score = 27.2 bits (53), Expect(4) = 9e-031
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1 / -3
Query: 1051 GADAKKKKRVGWALDLTEAQAKPFVGTHYVLGDTWIQP 1164
G A + V WA +L A F+ +V G WI P
Sbjct: 380 GPGAAAVQGVSWARELDYESAHKFLVKSFVNGRHWIAP 267
Score = 22.6 bits (43), Expect(4) = 9e-031
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 844 TGFSFKNCSIGG 879
TGF+F NC + G
Sbjct: 575 TGFAFLNCRVTG 540
>gb|BU893747.1|BU893747 P081G11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 607
Score = 84.5 bits (178), Expect(2) = 3e-029
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +1 / +2
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
+REK F+ + PF+TF D +P + NDTA+ +GKDGKP+ T SAT+AV+++YF A
Sbjct: 383 YREKSFIPRTVPFVTFLGDSSEPPTITGNDTASVSGKDGKPLRTYQSATVAVDANYFVAI 562
Query: 538 GVVFRNDAP 564
+ F N AP
Sbjct: 563 NMKFENTAP 589
Score = 65.2 bits (136), Expect(2) = 3e-029
Identities = 28/57 (49%), Positives = 34/57 (59%)
Frame = +1 / +2
Query: 181 GDGGKEPLDKKLSEAEKKKVTYVVDPSGKGDYTNITAALEDIPVSNTKRVILDLKPG 351
G GGK LD KL +AE V V G GD+ IT A+ IP NT+RVI+ +KPG
Sbjct: 209 GAGGKSVLDGKLQQAEMNSVRVTVSQDGTGDFKTITEAINSIPPYNTRRVIVAIKPG 379
>gb|DV464403.1|DV464403 MTUNUL1.P27.A10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 711
Score = 110 bits (234), Expect(2) = 8e-027
Identities = 48/107 (44%), Positives = 60/107 (56%)
Frame = +1 / +1
Query: 358 FREKLFLNISKPFITFRSDPKKPAVVVWNDTAATNGKDGKPVGTVGSATLAVESDYFTAY 537
++EK+ + K FIT +V W DTA T G G+P+GT SAT AV S +F A
Sbjct: 391 YKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAK 570
Query: 538 GVVFRNDAPLAKPGAKGGQAVAVRLFGTKTQIYNCTIDGGQDTLYDH 678
+ F+N APL PGA G QAVA+R+ C G QDTLYDH
Sbjct: 571 NITFKNTAPLPAPGAMGRQAVALRISADTAAFLGCKFLGAQDTLYDH 711
Score = 31.3 bits (62), Expect(2) = 8e-027
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 268 GDYTNITAALEDIPVSNTKRVILDLKPG 351
GD+T I A++ +P N RVI+ ++ G
Sbjct: 304 GDFTTIQEAIDSLPFINLVRVIIKIRAG 387
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 422,567,483
Number of Sequences: 369679
Number of extensions: 5365505
Number of successful extensions: 30742
Number of sequences better than 1.0e-020: 19
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 18464392083
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)