TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115079.2.1
(636 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV237315.1|CV237315 WS01227.B21.1_G02 PT-GT-FL-A-3 Popul... 90 1e-022
gb|CV282847.1|CV282847 WS0185.B21_M05 PTxD-IL-N-A-9 Populus... 90 1e-022
gb|BP930747.1|BP930747 BP930747 full-length enriched poplar... 90 1e-022
gb|BP936875.1|BP936875 BP936875 full-length enriched poplar... 88 5e-022
gb|CV234989.1|CV234989 WS01217.B21_D18 PT-GT-FL-A-3 Populus... 86 1e-021
gb|BU825438.1|BU825438 UK108TG05 Populus apical shoot cDNA ... 86 3e-021
gb|CA930362.1|CA930362 MTU4CA.P21.F09 Aspen apex cDNA Libra... 87 4e-021
gb|CK096628.1|CK096628 UB21CPD05.3pR Populus active cambium... 90 4e-021
gb|CA929710.1|CA929710 MTU2CA.P1.F01 Aspen apex cDNA Librar... 87 6e-021
gb|CA930343.1|CA930343 MTU4CA.P21.D11 Aspen apex cDNA Libra... 87 6e-021
gb|CA929722.1|CA929722 MTU2CA.P1.G07 Aspen apex cDNA Librar... 87 6e-021
gb|CA930611.1|CA930611 MTU4CA.P24.E10 Aspen apex cDNA Libra... 87 6e-021
gb|CA930544.1|CA930544 MTU4CA.P23.G12 Aspen apex cDNA Libra... 87 6e-021
gb|CA930638.1|CA930638 MTU4CA.P24.H02 Aspen apex cDNA Libra... 87 6e-021
gb|CA926911.1|CA926911 MTU6CR.P2.F06 Aspen root cDNA Librar... 87 6e-021
gb|CA927111.1|CA927111 MTU6CR.P5.B01 Aspen root cDNA Librar... 87 6e-021
gb|CA930099.1|CA930099 MTU2CA.P7.A11 Aspen apex cDNA Librar... 87 6e-021
gb|CA930455.1|CA930455 MTU4CA.P22.G10 Aspen apex cDNA Libra... 87 6e-021
gb|CV264180.1|CV264180 WS02023.B21_N09 PTxN-IB-N-A-11 Popul... 85 6e-021
gb|CA930095.1|CA930095 MTU2CA.P7.A05 Aspen apex cDNA Librar... 87 6e-021
gb|CA926892.1|CA926892 MTU6CR.P2.D11 Aspen root cDNA Librar... 87 6e-021
gb|CA926527.1|CA926527 MTU6CR.P16.A11 Aspen root cDNA Libra... 87 6e-021
gb|CA926134.1|CA926134 MTU6CR.P10.D08 Aspen root cDNA Libra... 86 8e-021
gb|CA927291.1|CA927291 MTU6CR.P7.C02 Aspen root cDNA Librar... 85 8e-021
>gb|CV237315.1|CV237315 WS01227.B21.1_G02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_G02 3', mRNA sequence
Length = 852
Score = 90.0 bits (190), Expect(2) = 1e-022
Identities = 35/88 (39%), Positives = 56/88 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I IE +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+
Sbjct: 584 VPGLISKNIEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQV 405
Query: 455 LMNYGNVSSNTIFYVLEYLRDELKKGAI 372
L +YGN+SS + ++L+ +R + K +
Sbjct: 404 LADYGNMSSACVLFILDEMRKKSAKDGL 321
Score = 36.3 bits (73), Expect(2) = 1e-022
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2 / -2
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
+D LK EWG++ FGPG+T E +++ V
Sbjct: 332 KDGLKSTGEGLEWGVLFGFGPGLTVETVVLHSV 234
>gb|CV282847.1|CV282847 WS0185.B21_M05 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0185_M05 3', mRNA sequence
Length = 745
Score = 89.5 bits (189), Expect(2) = 1e-022
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+
Sbjct: 576 VPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQV 397
Query: 455 LMNYGNVSSNTIFYVLEYLRDELKKGAI 372
L +YGN+SS + ++L+ +R + K +
Sbjct: 396 LADYGNMSSACVLFILDEMRKKSAKDGL 313
Score = 36.3 bits (73), Expect(2) = 1e-022
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGVKKT 291
+D LK EWG++ FGPG+T E +++ + T
Sbjct: 324 KDGLKSTGEGLEWGVLFGFGPGLTVETVVLHSLPAT 217
>gb|BP930747.1|BP930747 BP930747 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-014_E22.r 3', mRNA sequence
Length = 608
Score = 89.5 bits (189), Expect(2) = 1e-022
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+
Sbjct: 580 VPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQV 401
Query: 455 LMNYGNVSSNTIFYVLEYLRDELKKGAI 372
L +YGN+SS + ++L+ +R + K +
Sbjct: 400 LADYGNMSSACVLFILDEMRKKSAKDGL 317
Score = 36.3 bits (73), Expect(2) = 1e-022
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGVKKT 291
+D LK EWG++ FGPG+T E +++ + T
Sbjct: 328 KDGLKSTGEGLEWGVLFGFGPGLTVETVVLHSLPAT 221
>gb|BP936875.1|BP936875 BP936875 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-097_L20.r 3', mRNA sequence
Length = 621
Score = 87.7 bits (185), Expect(2) = 5e-022
Identities = 33/84 (39%), Positives = 54/84 (64%)
Frame = -2 / -3
Query: 623 IESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKALMNY 444
I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+ L +Y
Sbjct: 619 ISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQVLADY 440
Query: 443 GNVSSNTIFYVLEYLRDELKKGAI 372
GN+SS + ++L+ +R + K +
Sbjct: 439 GNMSSACVLFILDEMRKKSAKDGL 368
Score = 36.3 bits (73), Expect(2) = 5e-022
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2 / -3
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGVKKT 291
+D LK EWG++ FGPG+T E +++ + T
Sbjct: 379 KDGLKSTGEGLEWGVLFGFGPGLTVETVVLHSLPAT 272
>gb|CV234989.1|CV234989 WS01217.B21_D18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01217_D18 3', mRNA sequence
Length = 570
Score = 86.3 bits (182), Expect(2) = 1e-021
Identities = 31/69 (44%), Positives = 51/69 (73%)
Frame = -2 / -3
Query: 578 VGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKALMNYGNVSSNTIFYVLEYL 399
+GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+ L +YGN+SS + ++L+ +
Sbjct: 526 LGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQVLADYGNMSSACVLFILDEM 347
Query: 398 RDELKKGAI 372
R + K +
Sbjct: 346 RKKSAKDGL 320
Score = 36.3 bits (73), Expect(2) = 1e-021
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2 / -3
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
+D LK EWG++ FGPG+T E +++ V
Sbjct: 331 KDGLKSTGEGLEWGVLFGFGPGLTVETVVLHSV 233
>gb|BU825438.1|BU825438 UK108TG05 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 485
Score = 86.3 bits (182), Expect(2) = 3e-021
Identities = 31/69 (44%), Positives = 51/69 (73%)
Frame = -2 / +2
Query: 578 VGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKALMNYGNVSSNTIFYVLEYL 399
+GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+ L +YGN+SS + ++L+ +
Sbjct: 26 LGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQVLADYGNMSSACVLFILDEM 205
Query: 398 RDELKKGAI 372
R + K +
Sbjct: 206 RKKSAKDGL 232
Score = 35.0 bits (70), Expect(2) = 3e-021
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2 / +2
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
+D L+ EWG++ FGPG+T E +++ V
Sbjct: 221 KDGLRSTGEGLEWGVLFGFGPGLTVETVVLHSV 319
>gb|CA930362.1|CA930362 MTU4CA.P21.F09 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 673
Score = 87.2 bits (184), Expect(2) = 4e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMXAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 4e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CK096628.1|CK096628 UB21CPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB21CPD05 3', mRNA sequence
Length = 637
Score = 89.5 bits (189), Expect(2) = 4e-021
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R+
Sbjct: 408 VPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRQV 229
Query: 455 LMNYGNVSSNTIFYVLEYLRDELKKGAI 372
L +YGN+SS + ++L+ +R + K +
Sbjct: 228 LADYGNMSSACVLFILDEMRKKSAKDGL 145
Score = 31.3 bits (62), Expect(2) = 4e-021
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2 / -2
Query: 398 RDELKKGAISEEWGLILAFGPGITFEGLLVRGVKKT 291
+D L+ EWG++ GPG+T E +++ + T
Sbjct: 156 KDGLRSTGEGLEWGVLFGSGPGLTVETVVLHSLPAT 49
>gb|CA929710.1|CA929710 MTU2CA.P1.F01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CA930343.1|CA930343 MTU4CA.P21.D11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 691
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / +3
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 300 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 479
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 480 LSEYGNMSSACVLFILDEMR 539
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / +3
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 555 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 650
>gb|CA929722.1|CA929722 MTU2CA.P1.G07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 688
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / +3
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 300 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 479
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 480 LSEYGNMSSACVLFILDEMR 539
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / +3
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 555 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 650
>gb|CA930611.1|CA930611 MTU4CA.P24.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 687
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -1
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CA930544.1|CA930544 MTU4CA.P23.G12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 682
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CA930638.1|CA930638 MTU4CA.P24.H02 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 681
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -1
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CA926911.1|CA926911 MTU6CR.P2.F06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 675
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -1
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CA927111.1|CA927111 MTU6CR.P5.B01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 672
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / +3
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 300 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 479
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 480 LSEYGNMSSACVLFILDEMR 539
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / +3
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 555 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 650
>gb|CA930099.1|CA930099 MTU2CA.P7.A11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 533 VPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 354
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 353 LSEYGNMSSACVLFILDEMR 294
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 278 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 183
>gb|CA930455.1|CA930455 MTU4CA.P22.G10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 652
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CV264180.1|CV264180 WS02023.B21_N09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_N09 3', mRNA sequence
Length = 649
Score = 85.4 bits (180), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L L+PEKL+ +R
Sbjct: 618 VPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLGLKPEKLRATRHV 439
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 438 LSEYGNMSSACVLFILDEMR 379
Score = 35.0 bits (70), Expect(2) = 6e-021
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGVKKT 291
D L+ EWG++ FGPG+T E +++ V T
Sbjct: 363 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSVAPT 259
>gb|CA930095.1|CA930095 MTU2CA.P7.A05 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 620
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -3
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 471 VPGLISKNVEKSLMEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 292
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 291 LSEYGNMSSACVLFILDEMR 232
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -3
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 216 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 121
>gb|CA926892.1|CA926892 MTU6CR.P2.D11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 611
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / +2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 80 VPGLISKNVEKSLTEAFRPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 259
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 260 LSEYGNMSSACVLFILDEMR 319
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / +2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 335 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 430
>gb|CA926527.1|CA926527 MTU6CR.P16.A11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 543
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -1
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 531 VPGLISKNVEKSLTKAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 352
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 351 LSEYGNMSSACVLFILDEMR 292
Score = 33.6 bits (67), Expect(2) = 6e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 276 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 181
>gb|CA926134.1|CA926134 MTU6CR.P10.D08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 710
Score = 86.3 bits (182), Expect(2) = 8e-021
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2 / -1
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L+L+PEKL+ +R
Sbjct: 533 VPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLELKPEKLRATRHV 354
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 353 LNEYGNMSSACVLFILDEMR 294
Score = 33.6 bits (67), Expect(2) = 8e-021
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGV 300
D L+ EWG++ FGPG+T E +++ V
Sbjct: 278 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSV 183
>gb|CA927291.1|CA927291 MTU6CR.P7.C02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 631
Score = 84.9 bits (179), Expect(2) = 8e-021
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = -2 / -2
Query: 635 LPEKIESRIEGFCRTLMNQVGIKDFNDIFWAVHPGGPAILNRLEFCLKLQPEKLKISRKA 456
+P I +E +GI D+N +FW HPGGPAIL+++E L L+PEKL+ +R
Sbjct: 585 VPGLISKNVEKSLTEAFKPLGIADWNSLFWIAHPGGPAILDQVEAKLGLKPEKLRATRHV 406
Query: 455 LMNYGNVSSNTIFYVLEYLR 396
L YGN+SS + ++L+ +R
Sbjct: 405 LSEYGNMSSACVLFILDEMR 346
Score = 35.0 bits (70), Expect(2) = 8e-021
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2 / -2
Query: 395 DELKKGAISEEWGLILAFGPGITFEGLLVRGVKKT 291
D L+ EWG++ FGPG+T E +++ V T
Sbjct: 330 DGLQSTGEGLEWGVLFGFGPGLTVETVVLHSVAPT 226
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 335,027,317
Number of Sequences: 369679
Number of extensions: 4744448
Number of successful extensions: 50912
Number of sequences better than 1.0e-020: 29
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7831881440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)