TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA li... 208 3e-072
gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDN... 156 7e-067
gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus... 206 2e-052
gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus... 200 9e-051
gb|CV259899.1|CV259899 WS02012.B21_J06 PTxN-IB-N-A-11 Popul... 166 5e-048
gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus... 171 7e-048
gb|DT478507.1|DT478507 WS02522.BR_P13 PT-MB-N-A-15 Populus ... 180 1e-044
gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA librar... 112 3e-043
gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus ... 157 1e-037
gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus... 157 1e-037
gb|BI122326.1|BI122326 I005P20P Populus leaf cDNA library P... 125 3e-031
gb|CK095962.1|CK095962 UA38BPF06.3pR Populus dormant cambiu... 125 5e-028
gb|BU819039.1|BU819039 UA38BPF06 Populus tremula cambium cD... 123 2e-027
gb|BU873883.1|BU873883 Q061A02 Populus flower cDNA library ... 120 2e-026
gb|CV283626.1|CV283626 WS0187.B21_N13 PTxD-IL-N-A-9 Populus... 115 6e-025
gb|BU896473.1|BU896473 X041D07 Populus wood cDNA library Po... 113 2e-024
gb|AJ772144.1|AJ772144 AJ772144 Populus euphratica shoot in... 107 1e-022
>gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 208 bits (449), Expect(3) = 3e-072
Identities = 81/144 (56%), Positives = 108/144 (75%)
Frame = +3 / +1
Query: 192 AEKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGS 371
++K E ++I E+ SS YC +F PPVK++++ +RIQALRCHV+Y +G+
Sbjct: 223 SDKKAENEERIVTAAEQLSSDYCYAFTVKKPGLVPPVKDLQKVLRIQALRCHVIYCQNGT 402
Query: 372 KLNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNT 551
+LNVIPVLASRSQALRYLY+RWGVEL+N+ V GECGDTDYEGLLGG+HK+++LKG ++
Sbjct: 403 RLNVIPVLASRSQALRYLYVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSS 582
Query: 552 APNQVHANRSYSSQDVVSFDKQGI 623
A NQ+HANRSY DV+ + I
Sbjct: 583 ASNQLHANRSYPLTDVMPSESPNI 654
Score = 84.5 bits (178), Expect(3) = 7e-026
Identities = 42/93 (45%), Positives = 53/93 (56%)
Frame = -3 / -3
Query: 463 TVMFDSSTPHRIYKYLKACEREAKTGITFNLLPSWLYKTWQRSACILIVLLISFTGGAAA 284
T +F +STPHR +YL+A +REA TGITFNL+P W TWQR A IL S TGG
Sbjct: 494 TTIFANSTPHRT*RYLRAWDREANTGITFNLVPFWQ*ITWQRRA*ILSTF*RSLTGGTNP 315
Query: 283 VLDPLNEMQ*VDEHSSSSINIFCPLSLFFSAAQ 185
+ Q* DE S+++ I S F S +
Sbjct: 314 GFFTVKA*Q*SDESCSAAVTIRSSFSAFLSETE 216
Score = 73.5 bits (154), Expect(3) = 3e-072
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 90 NPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
NP + PF++D YHS IEYRWGGEGLRKTL+RWA+ + ++ +
Sbjct: 112 NPEDGPFVVDFYYHSHIEYRWGGEGLRKTLVRWASSVSDKKAE 240
Score = 48.7 bits (100), Expect(3) = 7e-026
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / -3
Query: 190 AQRINVFLKPSPPQRYSIWE**SRSIMNGSSAGLSM 83
AQR VFL PSPPQRYS+ E** +S G S+GL +
Sbjct: 212 AQRTRVFLSPSPPQRYSMCE***KSTTKGPSSGLGV 105
Score = 29.9 bits (59), Expect(3) = 3e-072
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3 / +1
Query: 3 GIEASXFXAFICNXXXDLXXPSSSSED 83
G S F AFICN DL + + ED
Sbjct: 43 GFSPSDFDAFICNSGSDLYYSTPNPED 123
Score = 22.1 bits (42), Expect(3) = 7e-026
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1 / -2
Query: 651 CLDHIPQLKQFLVCQRIQHLGM 586
CL++I L +C+R+ +GM
Sbjct: 663 CLNNIRAL*WHDICERVASIGM 598
>gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P72 5', mRNA sequence
Length = 597
Score = 156 bits (336), Expect(4) = 7e-067
Identities = 60/106 (56%), Positives = 79/106 (74%)
Frame = +3 / +1
Query: 192 AEKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGS 371
++K E ++I E+ S+ YC +F PPVKE+++ +RIQALRCHV+Y +G+
Sbjct: 178 SDKKAENEERIVTAAEQLSTDYCYAFTVKKPGLVPPVKELQKVLRIQALRCHVIYCQNGT 357
Query: 372 KLNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLG 509
+LNVIPVLASRSQALRYLY+RWGVEL+N+ V GECGDTDYE + G
Sbjct: 358 RLNVIPVLASRSQALRYLYVRWGVELANMVVFAGECGDTDYERIAG 495
Score = 82.2 bits (173), Expect(2) = 8e-024
Identities = 42/93 (45%), Positives = 52/93 (55%)
Frame = -3 / -2
Query: 463 TVMFDSSTPHRIYKYLKACEREAKTGITFNLLPSWLYKTWQRSACILIVLLISFTGGAAA 284
T +F +STPHR +YL+A EREA TGITFNL+P W TWQR A IL S TGG
Sbjct: 449 TTIFANSTPHRT*RYLRAWEREANTGITFNLVPFWQ*ITWQRRA*ILSTF*SSLTGGTNP 270
Query: 283 VLDPLNEMQ*VDEHSSSSINIFCPLSLFFSAAQ 185
+ Q* E S+++ I S F S +
Sbjct: 269 GFFTVKA*Q*SVESCSAAVTIRSSFSAFLSETE 171
Score = 73.5 bits (154), Expect(4) = 7e-067
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +3 / +1
Query: 90 NPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
NP + PF++D YHS IEYRWGGEGLRKTL+RWA+ + ++ +
Sbjct: 67 NPEDGPFVVDFYYHSHIEYRWGGEGLRKTLVRWASSVSDKKAE 195
Score = 54.2 bits (112), Expect(4) = 7e-067
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3 / +2
Query: 498 GLLGGVHKTIILKGSFNTAPNQVHANRSYSSQDVV 602
GLLGG+HK++ILKG +A NQ+H NRSY DV+
Sbjct: 485 GLLGGLHKSVILKGVCTSASNQLHGNRSYPLTDVL 589
Score = 48.7 bits (100), Expect(2) = 8e-024
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -3 / -2
Query: 190 AQRINVFLKPSPPQRYSIWE**SRSIMNGSSAGLSM 83
AQR VFL PSPPQRYS+ E** +S G S+GL +
Sbjct: 167 AQRTRVFLSPSPPQRYSMCE***KSTTKGPSSGLGV 60
Score = 27.6 bits (54), Expect(4) = 7e-067
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3 / +1
Query: 15 SXFXAFICNXXXDLXXPSSSSED 83
S F AFICN DL + + ED
Sbjct: 10 SDFDAFICNSGSDLYYSTPNPED 78
>gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_L05 3', mRNA sequence
Length = 901
Score = 206 bits (444), Expect = 2e-052
Identities = 80/144 (55%), Positives = 107/144 (74%)
Frame = +3 / -2
Query: 192 AEKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGS 371
++K E ++I E+ S+ YC +F PPVKE+++ +RIQALRCH +Y +G+
Sbjct: 885 SDKKAENEKRIVTAAEQLSTDYCYAFTVKKPGLVPPVKELQKALRIQALRCHAIYCQNGT 706
Query: 372 KLNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNT 551
+LNVIPVLASRSQALRYLY+RWGVEL+N+ V GECGDTDYEGLLGG+HK+++LKG ++
Sbjct: 705 RLNVIPVLASRSQALRYLYVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSS 526
Query: 552 APNQVHANRSYSSQDVVSFDKQGI 623
A NQ+HANRSY DV+ + I
Sbjct: 525 ASNQLHANRSYPLTDVMPSESPNI 454
>gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_J20 3', mRNA sequence
Length = 852
Score = 200 bits (432), Expect = 9e-051
Identities = 77/129 (59%), Positives = 100/129 (77%)
Frame = +3 / -1
Query: 237 EECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQAL 416
E+ S+ YC +F PPVKE+++ +RIQALRCH +Y +G++LNVIPVLASRSQAL
Sbjct: 840 EQLSTDYCYAFTVKKPGLVPPVKELQKALRIQALRCHAIYCQNGTRLNVIPVLASRSQAL 661
Query: 417 RYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQD 596
RYLY+RWGVEL+N+ V GECGDTDYEGLLGG+HK+++LKG ++A NQ+HANRSY D
Sbjct: 660 RYLYVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQLHANRSYPLTD 481
Query: 597 VVSFDKQGI 623
V+ + I
Sbjct: 480 VMPSESPNI 454
>gb|CV259899.1|CV259899 WS02012.B21_J06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_J06 3', mRNA sequence
Length = 770
Score = 166 bits (358), Expect(2) = 5e-048
Identities = 62/82 (75%), Positives = 74/82 (90%)
Frame = +3 / -2
Query: 294 PPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYIRWGVELSNITVIVG 473
PPVKE+R+ MRIQALRCHV+Y G+K+NVIPVLASRSQALRYLY+RWG +LSNI + G
Sbjct: 748 PPVKELRKLMRIQALRCHVIYCQQGAKINVIPVLASRSQALRYLYVRWGTDLSNIVIFTG 569
Query: 474 ECGDTDYEGLLGGVHKTIILKG 539
ECGDTDYEGLLGG+HK+++LKG
Sbjct: 568 ECGDTDYEGLLGGLHKSVVLKG 503
Score = 45.1 bits (92), Expect(2) = 5e-048
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3 / -2
Query: 561 QVHANRSYSSQDVVSFDKQGIASIEGYGPDNLKSALRQFGILK 689
++HANRSY +DV FD G +++K +L + GILK
Sbjct: 484 KLHANRSYPLEDVAPFDNPNFVQARGCNAEDIKESLEKLGILK 356
>gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 3', mRNA sequence
Length = 813
Score = 171 bits (368), Expect(3) = 7e-048
Identities = 68/130 (52%), Positives = 94/130 (72%)
Frame = +3 / +1
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+ + Q+I + S+ YC +F + PPVKE+++ + IQALRCH +Y +G+
Sbjct: 172 DNKADDAQRIVSSP*QLSTDYCYAFTVKKPVSVPPVKELQKVLTIQALRCHAIY*RNGTT 351
Query: 375 LNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTA 554
+NVIPVLASRSQALRYLY+ W VEL+++ V VG CGDT YEGLL G+HK++ILKG +TA
Sbjct: 352 INVIPVLASRSQALRYLYVPWAVELASMVVFVG*CGDTYYEGLLVGLHKSVILKGVCSTA 531
Query: 555 PNQVHANRSY 584
+Q+H+NRSY
Sbjct: 532 SSQIHSNRSY 561
Score = 33.1 bits (66), Expect(3) = 7e-048
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 102 LPFMIDLDYHSQIEYRWG 155
+PF+ID YHS IEYR G
Sbjct: 69 VPFVIDFYYHSHIEYRCG 122
Score = 25.4 bits (49), Expect(3) = 7e-048
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +1
Query: 153 GGEGLRKTLIRW 188
G EGLRKTL W
Sbjct: 121 GAEGLRKTLFLW 156
>gb|DT478507.1|DT478507 WS02522.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 5', mRNA sequence
Length = 788
Score = 180 bits (388), Expect = 1e-044
Identities = 67/118 (56%), Positives = 92/118 (77%)
Frame = +3 / -3
Query: 258 CISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYIRW 437
C +F + PP KE+++ +RIQALRCH +Y +G ++NVIPV ASRSQALRYLY+RW
Sbjct: 786 CYAFTVKKPGSVPPDKELQKALRIQALRCHAIYRQNGIRINVIPVCASRSQALRYLYVRW 607
Query: 438 GVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQDVVSFD 611
GVEL+++ V VGECGDTDYEGLLGG+HK++ILKG ++A +Q+H+NR Y D++ +
Sbjct: 606 GVELASMVVFVGECGDTDYEGLLGGLHKSVILKGVCSSASSQIHSNRRYPLSDIMPLE 433
>gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 425
Score = 112 bits (239), Expect(3) = 3e-043
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = +3 / +2
Query: 198 KNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKL 377
+ E ++I E+ S+ YC +F PPVKE+++ +RIQALRCHV+Y +G++L
Sbjct: 185 RKAENEERIVTAAEQLSTDYCYAFTVKKPGLVPPVKELQKVLRIQALRCHVIYCQNGTRL 364
Query: 378 NVIPVLASRSQALRYLYIRW 437
NVIPVLASRSQALRYLY+RW
Sbjct: 365 NVIPVLASRSQALRYLYVRW 424
Score = 74.4 bits (156), Expect(3) = 3e-043
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +3 / +1
Query: 90 NPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERG 215
NP + PF++D YHS IEYRWGGEGLRKTL+RWA+ + + G
Sbjct: 67 NPEDGPFVVDFYYHSHIEYRWGGEGLRKTLVRWASSVSDKEG 192
Score = 27.6 bits (54), Expect(3) = 3e-043
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3 / +1
Query: 15 SXFXAFICNXXXDLXXPSSSSED 83
S F AFICN DL + + ED
Sbjct: 10 SDFDAFICNSGSDLYYSTPNPED 78
>gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 5', mRNA sequence
Length = 751
Score = 157 bits (337), Expect = 1e-037
Identities = 57/94 (60%), Positives = 78/94 (82%)
Frame = +3 / +1
Query: 342 CHVLYSHDGSKLNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHK 521
CH +Y +G+++NVIPVLASRSQALRYLY+RWGVEL+++ V VGECGDTDYEGLLGG+HK
Sbjct: 4 CHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHK 183
Query: 522 TIILKGSFNTAPNQVHANRSYSSQDVVSFDKQGI 623
++ILKG ++A +Q+H+NRSY D++ + +
Sbjct: 184 SVILKGVCSSASSQIHSNRSYPLSDIMPLESPNV 285
>gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 3', mRNA sequence
Length = 751
Score = 157 bits (337), Expect = 1e-037
Identities = 57/94 (60%), Positives = 78/94 (82%)
Frame = +3 / -1
Query: 342 CHVLYSHDGSKLNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHK 521
CH +Y +G+++NVIPVLASRSQALRYLY+RWGVEL+++ V VGECGDTDYEGLLGG+HK
Sbjct: 748 CHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHK 569
Query: 522 TIILKGSFNTAPNQVHANRSYSSQDVVSFDKQGI 623
++ILKG ++A +Q+H+NRSY D++ + +
Sbjct: 568 SVILKGVCSSASSQIHSNRSYPLSDIMPLESPNV 467
>gb|BI122326.1|BI122326 I005P20P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 486
Score = 125 bits (268), Expect(2) = 3e-031
Identities = 47/113 (41%), Positives = 78/113 (69%)
Frame = +3 / +3
Query: 198 KNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKL 377
K + ED++ + +CI++ + + V ++R+ +R++ LRCH++Y + ++L
Sbjct: 81 KQSDESSNPIEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRL 260
Query: 378 NVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILK 536
+IP LASR+QALRYL++RW + ++N+ VI+GE GDTDYE ++ G HKTIILK
Sbjct: 261 QIIPHLASRAQALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILK 419
Score = 29.9 bits (59), Expect(2) = 3e-031
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3 / +3
Query: 132 SQIEYRWGGEGLRKTL 179
+ I+YRWG +GL+KT+
Sbjct: 3 AHIDYRWGCDGLKKTI 50
>gb|CK095962.1|CK095962 UA38BPF06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA38BPF06 3', mRNA sequence
Length = 764
Score = 125 bits (267), Expect = 5e-028
Identities = 46/102 (45%), Positives = 76/102 (74%)
Frame = +3 / -1
Query: 231 EDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQ 410
ED++ + +CI++ + + V ++R+ +R++ LRCH++Y + ++L +IP LASR+Q
Sbjct: 659 EDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQ 480
Query: 411 ALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILK 536
ALRYL++RW + ++N+ VI+GE GDTDYE ++ G HKTIILK
Sbjct: 479 ALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILK 354
>gb|BU819039.1|BU819039 UA38BPF06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 511
Score = 123 bits (263), Expect = 2e-027
Identities = 46/113 (40%), Positives = 78/113 (69%)
Frame = +3 / +1
Query: 198 KNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKL 377
K + ED++ + +CI++ + + V ++R+ +R++ LRCH++Y + ++L
Sbjct: 163 KQSDESSNPIEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRL 342
Query: 378 NVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILK 536
+IP LASR+QALRYL++RW + ++N+ VI+GE GDTD+E ++ G HKTIILK
Sbjct: 343 QIIPHLASRAQALRYLFVRWRLNVANMFVILGENGDTDHEEMISGAHKTIILK 501
>gb|BU873883.1|BU873883 Q061A02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 616
Score = 120 bits (256), Expect = 2e-026
Identities = 44/96 (45%), Positives = 72/96 (75%)
Frame = +3 / +1
Query: 249 STYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLY 428
+ +CI++ + + V ++R+ +R++ LRCH++Y + ++L +IP LASR+QALRYL+
Sbjct: 31 NAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQALRYLF 210
Query: 429 IRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILK 536
+RW + ++N+ VI+GE GDTDYE ++ G HKTIILK
Sbjct: 211 VRWRLNVANMFVILGENGDTDYEEMISGAHKTIILK 318
>gb|CV283626.1|CV283626 WS0187.B21_N13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_N13 3', mRNA sequence
Length = 607
Score = 115 bits (245), Expect = 6e-025
Identities = 42/79 (53%), Positives = 64/79 (81%)
Frame = +3 / -1
Query: 300 VKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYIRWGVELSNITVIVGEC 479
V ++R+ +R++ LRCH++Y + ++L +IP LASR+QALRYL++RW + ++N+ VI+GE
Sbjct: 601 VDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQALRYLFVRWRLNVANMFVILGEN 422
Query: 480 GDTDYEGLLGGVHKTIILK 536
GDTDYE ++ G HKTIILK
Sbjct: 421 GDTDYEEMISGAHKTIILK 365
>gb|BU896473.1|BU896473 X041D07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 573
Score = 113 bits (242), Expect = 2e-024
Identities = 42/69 (60%), Positives = 55/69 (79%)
Frame = +3 / +3
Query: 417 RYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQD 596
+YLY+RWGVEL+N+ V GECGDTDYEGLLGG+HK+++LKG ++A NQ+HANRSY D
Sbjct: 27 QYLYVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQLHANRSYPLTD 206
Query: 597 VVSFDKQGI 623
V+ + I
Sbjct: 207 VLPSESPNI 233
>gb|AJ772144.1|AJ772144 AJ772144 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700002A12F1, mRNA sequence
Length = 371
Score = 107 bits (228), Expect = 1e-022
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = +3 / +3
Query: 423 LYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQDVV 602
LY+RWGVEL+++ V VGECGDTDYEGLLGG+HK++ILKG ++A +Q HANRSY D++
Sbjct: 3 LYVRWGVELASMVVFVGECGDTDYEGLLGGLHKSVILKGVCSSASSQFHANRSYPLSDIM 182
Query: 603 SFDKQGI 623
+ +
Sbjct: 183 PLESPNV 203
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 462,355,439
Number of Sequences: 369679
Number of extensions: 6572293
Number of successful extensions: 30707
Number of sequences better than 1.0e-020: 17
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 13546982181
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)