TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI069633.1|BI069633 C005P11U Populus strain T89 leaves P... 113 9e-025
gb|BU871150.1|BU871150 Q027D06 Populus flower cDNA library ... 113 9e-025
gb|BU883794.1|BU883794 R001E03 Populus root cDNA library Po... 113 9e-025
gb|CN520982.1|CN520982 GQ0108.B3_E06 GQ010 Populus trichoca... 113 9e-025
gb|CX173847.1|CX173847 D11_69-62_07.ab1 leaf inoculated wit... 113 9e-025
gb|CX176419.1|CX176419 F05_69-59_11.ab1 leaf inoculated wit... 113 9e-025
gb|DT477286.1|DT477286 WS02519.BR_I07 PT-MB-N-A-15 Populus ... 113 9e-025
gb|DT497480.1|DT497480 WS01126.BR_J17 PT-P-FL-A-2 Populus t... 113 9e-025
gb|DV463374.1|DV463374 MTUNUL1.P15.B03 NUL Populus fremonti... 113 9e-025
gb|BU867411.1|BU867411 S077H06 Populus imbibed seed cDNA li... 107 6e-023
gb|BU875171.1|BU875171 V003B08 Populus flower cDNA library ... 107 8e-023
gb|CK117463.1|CK117463 B051P45 Hybrid aspen plasmid library... 105 2e-022
gb|BI138152.1|BI138152 F099P78Y Populus flower cDNA library... 103 1e-021
gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cD... 103 1e-021
gb|BU830630.1|BU830630 T011A03 Populus apical shoot cDNA li... 103 1e-021
gb|BU836794.1|BU836794 T091A03 Populus apical shoot cDNA li... 103 1e-021
gb|CK100919.1|CK100919 F009P52.5pR Populus flower cDNA libr... 103 1e-021
gb|AJ777805.1|AJ777805 AJ777805 Populus euphratica root 3-6... 103 1e-021
gb|AJ778661.1|AJ778661 AJ778661 Populus euphratica cambium ... 103 1e-021
gb|CV130845.1|CV130845 X9SP06c03 Populus stem seasonal libr... 103 1e-021
gb|CX169614.1|CX169614 G08_69-53_14.ab1 leaf inoculated wit... 103 1e-021
gb|CX169882.1|CX169882 B11_69-49_03.ab1 leaf inoculated wit... 103 1e-021
gb|CX171926.1|CX171926 E01_69-116_09.ab1 leaf inoculated wi... 103 1e-021
gb|CX659089.1|CX659089 PO01026D05 Poplar SC cDNA library Po... 103 1e-021
gb|DT475295.1|DT475295 WS0126.BR_K17 PT-GT-FL-A-3 Populus t... 103 1e-021
gb|DT477531.1|DT477531 WS02520.BR_D16 PT-MB-N-A-15 Populus ... 103 1e-021
gb|DT506339.1|DT506339 WS0189.C21_F04 PTxD-IL-N-A-9 Populus... 103 1e-021
gb|DV464439.1|DV464439 MTUNUL1.P27.E08 NUL Populus fremonti... 103 1e-021
gb|DV466595.1|DV466595 MTUNUL1.P7.F11 NUL Populus fremontii... 103 1e-021
gb|AY675562.1| Populus tomentosa myb family transcription f... 103 1e-021
gb|DN502651.1|DN502651 X029B05.5pR Populus wood cDNA librar... 98 4e-021
gb|BU895666.1|BU895666 X029B05 Populus wood cDNA library Po... 98 4e-021
gb|AJ776405.1|AJ776405 AJ776405 Populus euphratica root 3-6... 98 4e-021
gb|BU834640.1|BU834640 T063H04 Populus apical shoot cDNA li... 101 4e-021
gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA li... 101 4e-021
gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium... 100 6e-021
gb|CV241113.1|CV241113 WS02511.B21_E01 PT-MB-N-A-15 Populus... 100 6e-021
gb|BU866913.1|BU866913 S072B11 Populus imbibed seed cDNA li... 100 8e-021
gb|BU872341.1|BU872341 Q041H08 Populus flower cDNA library ... 100 8e-021
gb|BU873815.1|BU873815 Q060C05 Populus flower cDNA library ... 100 8e-021
gb|BU876622.1|BU876622 V023A09 Populus flower cDNA library ... 100 8e-021
gb|BU888654.1|BU888654 P010G03 Populus petioles cDNA librar... 100 8e-021
gb|AJ768036.1|AJ768036 AJ768036 Populus euphratica leaf adu... 100 8e-021
gb|BP922315.1|BP922315 BP922315 full-length enriched poplar... 100 8e-021
gb|BP922591.1|BP922591 BP922591 full-length enriched poplar... 100 8e-021
gb|BP926960.1|BP926960 BP926960 full-length enriched poplar... 100 8e-021
gb|DV464078.1|DV464078 MTUNUL1.P22.H05 NUL Populus fremonti... 100 8e-021
>gb|BI069633.1|BI069633 C005P11U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 447
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 183 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 359
>gb|BU871150.1|BU871150 Q027D06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 661
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 456 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 632
>gb|BU883794.1|BU883794 R001E03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 63 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 239
>gb|CN520982.1|CN520982 GQ0108.B3_E06 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_E06 5', mRNA sequence
Length = 723
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 381 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 557
>gb|CX173847.1|CX173847 D11_69-62_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 641
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 306 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 482
>gb|CX176419.1|CX176419 F05_69-59_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 630
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 423 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 599
>gb|DT477286.1|DT477286 WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_I07 5', mRNA sequence
Length = 891
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +2
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 431 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 607
>gb|DT497480.1|DT497480 WS01126.BR_J17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01126_J17 5', mRNA sequence
Length = 760
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 405 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 581
>gb|DV463374.1|DV463374 MTUNUL1.P15.B03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 895
Score = 113 bits (244), Expect = 9e-025
Identities = 46/59 (77%), Positives = 54/59 (91%)
Frame = +1 / +1
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
A+K RLRWT ELHERFV+AV +L GP++ATPKGVL++M V+GLTIYHVKSHLQKYRLAK
Sbjct: 448 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 624
>gb|BU867411.1|BU867411 S077H06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 749
Score = 107 bits (231), Expect = 6e-023
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +1 / +3
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
+NK RLRWT ELH+RF EAV +L GP++ATPKG+L+ M + GLTIYHVKSHLQKYR++K
Sbjct: 216 SNKERLRWTQELHDRFEEAVNQLGGPDRATPKGILRAMGISGLTIYHVKSHLQKYRISK 392
>gb|BU875171.1|BU875171 V003B08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 611
Score = 107 bits (230), Expect = 8e-023
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +1 / +2
Query: 409 ANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
+NK RLRWT ELH+RF EAV +L GP++ATPKG+L+ M + GLTIYHVKSHLQKYR++K
Sbjct: 197 SNKDRLRWTQELHDRFEEAVNQLGGPDRATPKGILRAMGIPGLTIYHVKSHLQKYRISK 373
>gb|CK117463.1|CK117463 B051P45 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B051P45 5', mRNA sequence
Length = 324
Score = 105 bits (227), Expect = 2e-022
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K R+RWT ELHE FVEAV L G E+ATPKGVLKLMKV+ LTIYHVKSHLQKYR A+
Sbjct: 131 KPRMRWTPELHEAFVEAVNNLGGSERATPKGVLKLMKVDSLTIYHVKSHLQKYRTAR 301
>gb|BI138152.1|BI138152 F099P78Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 304
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 97 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 276
>gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 427
Score = 103 bits (221), Expect = 1e-021
Identities = 40/60 (66%), Positives = 52/60 (86%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT+ELHERFV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL K
Sbjct: 82 TDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 261
>gb|BU830630.1|BU830630 T011A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 613
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +3
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 246 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 425
>gb|BU836794.1|BU836794 T091A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 607
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +3
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 246 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 425
>gb|CK100919.1|CK100919 F009P52.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F009P52 5', mRNA sequence
Length = 538
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 92 TDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 271
>gb|AJ777805.1|AJ777805 AJ777805 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035D01F1, mRNA sequence
Length = 689
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +3
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 87 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 266
>gb|AJ778661.1|AJ778661 AJ778661 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600004C06F1, mRNA sequence
Length = 748
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 26 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 205
>gb|CV130845.1|CV130845 X9SP06c03 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 878
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 160 TDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 339
>gb|CX169614.1|CX169614 G08_69-53_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 713
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 251 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 430
>gb|CX169882.1|CX169882 B11_69-49_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 715
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 253 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 432
>gb|CX171926.1|CX171926 E01_69-116_09.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 678
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +3
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 243 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 422
>gb|CX659089.1|CX659089 PO01026D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01026D05 5', mRNA sequence
Length = 694
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 200 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 379
>gb|DT475295.1|DT475295 WS0126.BR_K17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_K17 5', mRNA sequence
Length = 643
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 272 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 451
>gb|DT477531.1|DT477531 WS02520.BR_D16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_D16 5', mRNA sequence
Length = 850
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 286 TDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 465
>gb|DT506339.1|DT506339 WS0189.C21_F04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0189_F04 3', mRNA sequence
Length = 880
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 205 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 384
>gb|DV464439.1|DV464439 MTUNUL1.P27.E08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 835
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 137 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 316
>gb|DV466595.1|DV466595 MTUNUL1.P7.F11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 900
Score = 103 bits (221), Expect = 1e-021
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 170 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 349
>gb|AY675562.1| Populus tomentosa myb family transcription factor-related protein
mRNA, complete cds
Length = 1104
Score = 103 bits (221), Expect = 1e-021
Identities = 40/60 (66%), Positives = 52/60 (86%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT+ELHERFV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL K
Sbjct: 85 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 264
>gb|DN502651.1|DN502651 X029B05.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X029B05 5', mRNA sequence
Length = 761
Score = 98.1 bits (210), Expect(2) = 4e-021
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = +1 / +2
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELH+RFVEAV +L G +KATPK ++++M + GLT+YH+KSHLQKYRL
Sbjct: 299 STDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 478
Query: 583 K 585
K
Sbjct: 479 K 481
Score = 22.4 bits (43), Expect(2) = 4e-021
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2 / +3
Query: 290 YTAHHHSCHHFQY 328
Y HSCH+F++
Sbjct: 156 YKRQSHSCHNFKH 194
>gb|BU895666.1|BU895666 X029B05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 699
Score = 98.1 bits (210), Expect(2) = 4e-021
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = +1 / +1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELH+RFVEAV +L G +KATPK ++++M + GLT+YH+KSHLQKYRL
Sbjct: 301 STDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 480
Query: 583 K 585
K
Sbjct: 481 K 483
Score = 22.4 bits (43), Expect(2) = 4e-021
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2 / +2
Query: 290 YTAHHHSCHHFQY 328
Y HSCH+F++
Sbjct: 158 YKRQSHSCHNFKH 196
>gb|AJ776405.1|AJ776405 AJ776405 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400012G01F1, mRNA sequence
Length = 544
Score = 98.1 bits (210), Expect(2) = 4e-021
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = +1 / +1
Query: 403 ATANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLA 582
+T K RL+WT ELH+RFVEAV +L G +KATPK ++++M + GLT+YH+KSHLQKYRL
Sbjct: 340 STDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 519
Query: 583 K 585
K
Sbjct: 520 K 522
Score = 22.4 bits (43), Expect(2) = 4e-021
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2 / +2
Query: 290 YTAHHHSCHHFQY 328
Y HSCH+F++
Sbjct: 197 YKRESHSCHNFKH 235
>gb|BU834640.1|BU834640 T063H04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 636
Score = 101 bits (217), Expect = 4e-021
Identities = 40/60 (66%), Positives = 50/60 (83%)
Frame = +1 / +2
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT ELHERFV+AV +L GP+KA+PK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 98 TDPKPRLRWTAELHERFVDAVTQLGGPDKASPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 277
>gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 719
Score = 101 bits (217), Expect = 4e-021
Identities = 39/60 (65%), Positives = 52/60 (86%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWT+ELHERFV+AV +L GP+KATPK ++++M V+GLT+YH+KSHLQK+RL +
Sbjct: 214 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGE 393
>gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB20CPH01 5', mRNA sequence
Length = 451
Score = 100 bits (216), Expect = 6e-021
Identities = 40/60 (66%), Positives = 50/60 (83%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K RLRWTLELHERFV+AV L GP+KATPK ++++M V+GLT+YH+KS LQK+RL K
Sbjct: 124 TDPKPRLRWTLELHERFVDAVTLLGGPDKATPKAIMRIMGVKGLTLYHLKSRLQKFRLGK 303
>gb|CV241113.1|CV241113 WS02511.B21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_E01 3', mRNA sequence
Length = 688
Score = 100 bits (216), Expect = 6e-021
Identities = 40/58 (68%), Positives = 49/58 (84%)
Frame = +1 / -3
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 579
T K RLRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL
Sbjct: 560 TDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 387
>gb|BU866913.1|BU866913 S072B11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 695
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +1
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 223 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 393
>gb|BU872341.1|BU872341 Q041H08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 582
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +3
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 135 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 305
>gb|BU873815.1|BU873815 Q060C05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 682
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +1
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 253 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 423
>gb|BU876622.1|BU876622 V023A09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 663
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 197 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 367
>gb|BU888654.1|BU888654 P010G03 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 661
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +3
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 222 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 392
>gb|AJ768036.1|AJ768036 AJ768036 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100013D05F1, mRNA sequence
Length = 538
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 254 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 424
>gb|BP922315.1|BP922315 BP922315 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-006_F19.f 5', mRNA sequence
Length = 486
Score = 100 bits (215), Expect = 8e-021
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +1 / +1
Query: 406 TANKSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
T K LRWT ELHERFV+AV +L GP+KATPK +++ M V+GLT+YH+KSHLQKYRL K
Sbjct: 307 TDPKPMLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGK 486
>gb|BP922591.1|BP922591 BP922591 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-009_G19.f 5', mRNA sequence
Length = 518
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +2
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 251 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 421
>gb|BP926960.1|BP926960 BP926960 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-066_B08.f 5', mRNA sequence
Length = 450
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +1
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 271 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 441
>gb|DV464078.1|DV464078 MTUNUL1.P22.H05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 936
Score = 100 bits (215), Expect = 8e-021
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1 / +1
Query: 415 KSRLRWTLELHERFVEAVKKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAK 585
K RLRWT +LH+RFV+AV +L GP KATPK +L+ M V+GLT++H+KSHLQKYRL K
Sbjct: 232 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRLGK 402
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.314 0.132 0.386
Matrix: BLOSUM62
Number of Hits to DB: 268,850,526
Number of Sequences: 369679
Number of extensions: 3259512
Number of successful extensions: 40485
Number of sequences better than 1.0e-020: 51
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 6797596041
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 42 (22.0 bits)