TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 167 e-102
gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA librar... 157 8e-050
gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid librar... 191 6e-048
gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA libra... 190 1e-047
gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus... 188 6e-047
gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus... 186 3e-046
gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA librar... 144 6e-046
gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Popul... 144 2e-043
gb|BP932002.1|BP932002 BP932002 full-length enriched poplar... 176 2e-043
gb|BP933403.1|BP933403 BP933403 full-length enriched poplar... 175 4e-043
gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid lib... 150 4e-040
gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus ... 144 8e-040
gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Po... 70 3e-038
gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZA... 156 3e-037
gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichoca... 144 8e-034
gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA librar... 144 8e-034
gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA librar... 144 8e-034
gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus ... 144 1e-033
gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus t... 144 1e-033
gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus ... 144 1e-033
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 143 2e-033
gb|DN493190.1|DN493190 X068E11.3pR Populus wood cDNA librar... 143 3e-033
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 141 1e-032
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 141 1e-032
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 141 1e-032
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 141 1e-032
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 141 1e-032
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 140 1e-032
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 140 1e-032
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 140 1e-032
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 139 2e-032
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 139 3e-032
gb|DN503210.1|DN503210 X068E11.5pR Populus wood cDNA librar... 135 4e-031
gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA li... 133 2e-030
gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Po... 87 9e-030
gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium... 130 1e-029
gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichoca... 58 8e-026
gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Po... 117 1e-025
gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Popul... 102 1e-025
gb|BU891564.1|BU891564 P052B10 Populus petioles cDNA librar... 74 3e-025
gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library... 108 6e-023
gb|DT485310.1|DT485310 WS02527.B21_N20 PT-MB-N-A-15 Populus... 77 2e-022
gb|CV253436.1|CV253436 WS0221.B21_O23 PTxD-ICC-A-12 Populus... 77 2e-022
gb|CF228442.1|CF228442 PtaXM0013A9A0901 Poplar cDNA library... 77 2e-022
gb|CF233701.1|CF233701 PtaJXO0026F5F0511 Poplar cDNA librar... 77 2e-022
gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA librar... 106 2e-022
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 167 bits (360), Expect(6) = e-102
Identities = 66/84 (78%), Positives = 76/84 (90%)
Frame = -1 / +3
Query: 490 WGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLF 311
+ IA AWKPVVK++GLWK++R++ARLYDAGMGM+IFIPIA SWFPF+STFQTRL+F
Sbjct: 30879 FSFFQIASAWKPVVKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQTRLMF 31058
Query: 310 NQAFSRGLEISLILAGNNPNAGI* 239
NQAFSRGLEISLILAGNNPN GI*
Sbjct: 31059 NQAFSRGLEISLILAGNNPNIGI* 31130
Score = 115 bits (245), Expect(6) = 2e-056
Identities = 48/80 (60%), Positives = 56/80 (70%)
Frame = +3 / -2
Query: 237 HQIPAFGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASXXXXX 416
H IP GLLPAR+R+IS P L AWLN SRVWKV+ NGN ++ A+GMK++IPIPAS
Sbjct: 31132 HHIPILGLLPARMREISSPRLKAWLNMSRVWKVETNGNQDKNAIGMKISIPIPASYRRAI 30953
Query: 417 XXTVFHKPNFFTTGFHAMAI 476
FH P FTTGF A AI
Sbjct: 30952 ERMDFHNPIRFTTGFQADAI 30893
Score = 114 bits (244), Expect(6) = e-102
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = -1 / +2
Query: 1090 MEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLFAPYLFNPSGFEWQK 932
+EV LLLV++LAYG+N+GGA+ YILL++SSW MALSWLFAPYLFNPSGFEWQK
Sbjct: 28280 LEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFEWQK 28438
Score = 88.1 bits (186), Expect(6) = 2e-056
Identities = 38/59 (64%), Positives = 45/59 (76%)
Frame = +3 / -3
Query: 912 SLKSSTIFCHSNPDGLNK*GAKSQDNAIIQLLIESKI*PTAPPLLNPYARKITNKSATS 1088
++++S FCHSNPDGLNK*GAKSQD AI QLL ++* APP L PYAR T+KS TS
Sbjct: 28458 NIRNSAYFCHSNPDGLNK*GAKSQDRAINQLLTVRRM*DNAPPSLYPYARYTTSKSTTS 28282
Score = 83.5 bits (176), Expect(4) = 2e-030
Identities = 33/80 (41%), Positives = 46/80 (57%)
Frame = -3 / +2
Query: 476 DCHGMETCREEIGFVENCSCPSSPL*CWNGDGHFHTHSHLLVVSIHIHFPDATSVQPGVQ 297
DC +ETC E G +E P+ CW+GD H +S L++VSI + P+ VQP +Q
Sbjct: 30893 DCICLETCSETDGIMEIHPFNCPPIRCWDGDADLHPNSILVLVSIRFNLPNPAHVQPSLQ 31072
Query: 296 QRFGDISDPCWQQSKCWDLM 237
R G+ S CW Q + WD+M
Sbjct: 31073 PRTGNFSHSCW*QPQYWDMM 31132
Score = 77.6 bits (163), Expect(3) = 2e-027
Identities = 37/79 (46%), Positives = 47/79 (59%)
Frame = +2 / -1
Query: 239 SDPSIWIVASKDQRYLQTSAERLVEQKSRLESGYEWKPRANGYGYENDHPHSSIIEAS*G 418
S P+I +V SK++R Q+SAE LVE + LE EWKPR Y E+ HPH SI+ A
Sbjct: 31130 SYPNIGVVTSKNERNFQSSAEGLVEHEPGLEG*NEWKPRQECYWDEDQHPHPSIV*AGN* 30951
Query: 419 TNSFPQTQFLHDRFPCHGN 475
T+ FP + H RFP N
Sbjct: 30950 TDGFP*SHPFHYRFPSRCN 30894
Score = 61.6 bits (128), Expect(6) = e-102
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = -1 / +2
Query: 826 HIYSIRGRILETILSLRFFIFQFGVVYHMNASGGSTALLV 707
HI ++ GRI+ET+LSLRFFIFQ+GVVY ++ G T+L V
Sbjct: 29543 HIRTLSGRIMETLLSLRFFIFQYGVVYKLHIQGSDTSLSV 29662
Score = 60.6 bits (126), Expect(3) = 2e-027
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +2 / -2
Query: 932 LLPFKSRWVK*IGSKKPRQCHNPTAYRE*NIANCSTIVKPIR*EDHQQKCN 1084
LLP KSRW++ IGSKKPR H PTA + N+ C+TI+ P+ QQK N
Sbjct: 28438 LLPLKSRWIEQIGSKKPR*SHKPTADCKKNVR*CTTIIIPVCKVHDQQKHN 28286
Score = 57.4 bits (119), Expect(6) = e-102
Identities = 25/57 (43%), Positives = 32/57 (56%)
Frame = -1 / +1
Query: 640 KAMVHFQLFLRXXXXXXXXXXXXXXXXXXLFTKLSVRDVFASILAFVPTGWGIISIA 470
K V+FQL LR T+LSV D+FASILAF+PT WGI+S++
Sbjct: 30007 KVSVNFQLLLRFVQGVSFMLALAGIVIAVALTELSVSDIFASILAFIPTIWGILSVS 30177
Score = 57.4 bits (119), Expect(6) = e-102
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = -1 / +2
Query: 934 KIVEDFRDWTNWLFYRGGIGVKG 866
+ VEDF DWTNWLFYRGGIGVKG
Sbjct: 28514 RTVEDFSDWTNWLFYRGGIGVKG 28582
Score = 56.5 bits (117), Expect(4) = 2e-030
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = -2 / +3
Query: 1086 RLHFCW*SS*RMGLTMVEQLAIFYSL*AVGLWHCLGFLLPIYLTHLDLNGR 934
+L FCW + G+ MV F+ AVGLW LGFLLPI HLDL+G+
Sbjct: 28284 KLCFCWSCTLHTGIMMVVHYLTFFLQSAVGLWLYLGFLLPICSIHLDLSGK 28436
Score = 50.6 bits (104), Expect(6) = e-102
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = -1 / +3
Query: 1153 VRHIKFAENYRIYSRSHFVKG 1091
VRHI+F+ENYR+YSRSHFVKG
Sbjct: 28137 VRHIRFSENYRLYSRSHFVKG 28199
Score = 46.9 bits (96), Expect(6) = 2e-056
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +3 / -1
Query: 477 EMIPHPVGTNARMEAKTSLTLSFVNKIARTRAAKTINNATLLTKRRNNWKCT 632
+ IPH VG NA+M A SLT + V+ A T AK T TKR +WK T
Sbjct: 30170 DKIPHIVGINAKMLANMSLTDNSVSATAITIPAKANMKETPCTKRNKSWKLT 30015
Score = 43.7 bits (89), Expect(4) = 2e-030
Identities = 21/33 (63%), Positives = 21/33 (63%)
Frame = -3 / +1
Query: 932 DC*GFQRLDKLAVLSRWYWC*RRRKLGSLVGRR 834
D G Q LDKLA L RW W * RKLG LVG R
Sbjct: 28516 DSGGLQ*LDKLAFLQRWNWG*GTRKLGGLVG*R 28614
Score = 41.8 bits (85), Expect(3) = 2e-027
Identities = 19/52 (36%), Positives = 34/52 (65%)
Frame = +2 / -3
Query: 473 NRNDSPPSWHKC*NGSKNISHTEFRKQNCQDQSSQNHQ*RYTFDQTQEQLEM 628
+R +SP S +KC*+ K ++H +F K+NC + +SQ+ T + Q++LE+
Sbjct: 30174 HR*NSPYSGNKC*DARKYVTH*QFCKRNCNNYTSQS*HEGDTLYKAQQKLEI 30019
Score = 40.9 bits (83), Expect(6) = 2e-056
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +3 / -3
Query: 750 TTPNWKMKNLRLNMVSSILPRML*IC 827
TTP WK+KNLRL VS ILP + IC
Sbjct: 29619 TTPYWKIKNLRLKRVSIILPLKVRIC 29542
Score = 35.4 bits (71), Expect(6) = 2e-056
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = +3 / -2
Query: 1092 PFTKWLRE*IR*FSANLICRT 1154
P TKWLRE* *FS NLI RT
Sbjct: 28198 PLTKWLRE*SL*FSENLIWRT 28136
Score = 31.3 bits (62), Expect(4) = 2e-030
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3 / +3
Query: 659 GLWFKPQGHGTFPIVPAFGQKCSVIDGFGCSGPGNFVYETQCERCFCFHSSICANWVGN 483
G+ F+ +G FP A +C + FG + Y E C H SI ++++GN
Sbjct: 29988 GVHFQSEGLCQFPTFVALCTRCLLHVSFGWYSYCSCAYRIVSE*HICEHLSIYSHYMGN 30164
Score = 27.2 bits (53), Expect(6) = 2e-056
Identities = 7/13 (53%), Positives = 13/13 (100%)
Frame = +2 / -2
Query: 890 IKQPICPVSEILN 928
+K+PICP++E+L+
Sbjct: 28558 VKKPICPITEVLH 28520
>gb|CF232861.1|CF232861 PtaJXO0016F7F0711 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 737
Score = 157 bits (337), Expect(3) = 8e-050
Identities = 59/94 (62%), Positives = 74/94 (78%)
Frame = -1 / +2
Query: 1153 VRHIKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLF 974
V H KFAENYR+YSRSHFVKG+E+ +LLV++ +G AV Y+L++IS W M +WLF
Sbjct: 32 VFHAKFAENYRLYSRSHFVKGIEMMILLVVYQIFGQPYRSAVAYLLITISMWFMVGTWLF 211
Query: 973 APYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGV 872
AP+LFNPSGFEWQKIV+D+ DW W+ RGGIGV
Sbjct: 212 APFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGV 313
Score = 56.5 bits (117), Expect(3) = 8e-050
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +2
Query: 811 RGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
RG + E +LSLRFFI+Q+G+VYH+ + + + LVY +SW
Sbjct: 380 RGTLAEILLSLRFFIYQYGLVYHLTITKKTKSFLVYGVSW 499
Score = 27.6 bits (54), Expect(3) = 8e-050
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 517 SILAFVPTGWGII 479
+ LAF+PTGWG++
Sbjct: 678 AFLAFMPTGWGML 716
>gb|AI164628.1|AI164628 A066P21U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 268
Score = 191 bits (412), Expect = 6e-048
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = -1 / +2
Query: 1120 IYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLFAPYLFNPSGFE 941
+YSRSHFVKG+EV LLLV++LAYG+N+GGA+ YILL++SSW MALSWLFAPYLFNPSGFE
Sbjct: 2 LYSRSHFVKGLEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPYLFNPSGFE 181
Query: 940 WQKIVEDFRDWTNWLFYRGGIGVKG 866
WQK VEDF DWTNWLFYRGGIGVKG
Sbjct: 182 WQKTVEDFSDWTNWLFYRGGIGVKG 256
Score = 145 bits (311), Expect = 6e-034
Identities = 64/84 (76%), Positives = 68/84 (80%)
Frame = +3 / -2
Query: 867 PLTPIPPR*NSQFVQSLKSSTIFCHSNPDGLNK*GAKSQDNAIIQLLIESKI*PTAPPLL 1046
PLTPIPP * SQFVQSLKSST+FCHSNPDGLNK*GAKSQD AI QLL ++* APP L
Sbjct: 255 PLTPIPPL*KSQFVQSLKSSTVFCHSNPDGLNK*GAKSQDRAINQLLTVRRM*DNAPPSL 76
Query: 1047 NPYARKITNKSATSIPFTKWLRE* 1118
PYAR T+KS TS P TKWLRE*
Sbjct: 75 YPYARYTTSKSTTSSPLTKWLRE* 4
>gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 615
Score = 190 bits (410), Expect = 1e-047
Identities = 80/138 (57%), Positives = 97/138 (70%)
Frame = -1 / +1
Query: 646 NPKAMVHFQLFLRXXXXXXXXXXXXXXXXXXLFTKLSVRDVFASILAFVPTGWGIISIAM 467
+PK FQL +R FT LS+ D+FAS LAF+ TGW I+SIA+
Sbjct: 46 SPKRSTSFQLLMRFMQGIASLGLVAALCLTVAFTDLSIPDLFASFLAFIATGWTILSIAI 225
Query: 466 AWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGL 287
AWK +V LGLW +VR AR+YDAGMG++IF+PIA SWFPF+STFQ+RLLFNQAFSRGL
Sbjct: 226 AWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAFSRGL 405
Query: 286 EISLILAGNNPNAGI*WW 233
EISLILAGN N I*++
Sbjct: 406 EISLILAGNKANVEI*FF 459
Score = 133 bits (286), Expect = 2e-030
Identities = 63/140 (45%), Positives = 76/140 (54%)
Frame = +3 / -2
Query: 225 RNCHHQIPAFGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASX 404
R +QI L PAR+ +IS P LNAWL R WKV+ NGNH++ A+G K+ PIPAS
Sbjct: 467 RTVKNQISTLALFPARMSEISSPRLNAWLKSRRDWKVETNGNHDKNAIGTKINTPIPASY 288
Query: 405 XXXXXXTVFHKPNFFTTGFHAMAIEMIPHPVGTNARMEAKTSLTLSFVNKIARTRAAKTI 584
T HKP T FHA+AI+ I HPV NAR AK S V R RAA +
Sbjct: 287 ILANSRTESHKPKLQTIRFHAIAIDRIVHPVAINARKLAKRSGIDKSVKATVRQRAATSP 108
Query: 585 NNATLLTKRRNNWKCTMALG 644
+A KR N+WK G
Sbjct: 107 KDAIPCMKRINSWKLVDLFG 48
>gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_P11 3', mRNA sequence
Length = 718
Score = 188 bits (405), Expect = 6e-047
Identities = 80/149 (53%), Positives = 95/149 (63%)
Frame = -1 / -2
Query: 697 SWAXXXXXXXXXXXXXLNPKAMVHFQLFLRXXXXXXXXXXXXXXXXXXLFTKLSVRDVFA 518
SW +PK FQL +R FT LS+ D+FA
Sbjct: 711 SWVVLVCFVMIFKVFTYSPKRSTSFQLLMRFMQGIASLGLVAALCLIVAFTDLSIPDLFA 532
Query: 517 SILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFI 338
S LAF+ TGW I+SIA+AWK +V LGLW +VR AR+YDAGMG++IF+PIA SWFPF+
Sbjct: 531 SFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFV 352
Query: 337 STFQTRLLFNQAFSRGLEISLILAGNNPN 251
STFQ+RLLFNQAFSRGLEISLILAGN N
Sbjct: 351 STFQSRLLFNQAFSRGLEISLILAGNKAN 265
Score = 129 bits (277), Expect = 3e-029
Identities = 65/166 (39%), Positives = 81/166 (48%)
Frame = +3 / +2
Query: 201 VHRLMKQGRNCHHQIPAFGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKM 380
+ R + R + + L PARI +IS P LNAWL R WKV+ NGNH++ A+G K+
Sbjct: 215 MRRAISYKRLLIYDLSTLALFPARISEISSPRLNAWLKSRRDWKVETNGNHDKNAIGTKI 394
Query: 381 TIPIPASXXXXXXXTVFHKPNFFTTGFHAMAIEMIPHPVGTNARMEAKTSLTLSFVNKIA 560
PIPAS T HKP T FHA+AI+ I HPV NAR AK S V
Sbjct: 395 NTPIPASYILANSRTESHKPKLQTILFHAIAIDRIVHPVAINARKLAKRSGIDKSVKATI 574
Query: 561 RTRAAKTINNATLLTKRRNNWKCTMALGFXXXXXXXXXXXXSTAQE 698
R RAA + +A R N+WK G +T QE
Sbjct: 575 RQRAATSPKDAIPCMNRINSWKLVDLFGL*VKTLNIMTKQTNTTQE 712
>gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_B19 3', mRNA sequence
Length = 651
Score = 186 bits (400), Expect = 3e-046
Identities = 72/89 (80%), Positives = 84/89 (94%)
Frame = -1 / -2
Query: 505 FVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQ 326
F+PT WGI+SIA AWKPV+K++GLWK++R++ARLYDAGMGM+IFIPIA SWFPF+STFQ
Sbjct: 650 FIPTIWGILSIASAWKPVMKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQ 471
Query: 325 TRLLFNQAFSRGLEISLILAGNNPNAGI* 239
TRL+FNQAFSRGLEISLILAGNNPN GI*
Sbjct: 470 TRLMFNQAFSRGLEISLILAGNNPNIGI* 384
Score = 127 bits (271), Expect = 2e-028
Identities = 53/90 (58%), Positives = 62/90 (68%)
Frame = +3 / +1
Query: 237 HQIPAFGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASXXXXX 416
H IP GLLPAR+R+IS P L AWLN SRVWKV+ NGN ++ A+GMK++IPIPAS
Sbjct: 382 HHIPILGLLPARMREISSPRLKAWLNMSRVWKVETNGNQDKNAIGMKISIPIPASYRRAI 561
Query: 417 XXTVFHKPNFFTTGFHAMAIEMIPHPVGTN 506
FH P F TGF A AI+ IPH VG N
Sbjct: 562 ERMDFHNPIRFITGFQADAIDKIPHIVGIN 651
>gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009C11 5', mRNA sequence
Length = 826
Score = 144 bits (308), Expect(3) = 6e-046
Identities = 54/93 (58%), Positives = 75/93 (80%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+D+F ILAF+PTGWG++ IA A KP+V++ G W +V+ LAR Y+ MG+++F P+A
Sbjct: 382 MTVQDIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIIMGLLLFTPVA 561
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 562 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 660
Score = 55.6 bits (115), Expect(3) = 6e-046
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / +1
Query: 811 RGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
RG + E +LSLRFFI+Q+G+VYH+ + + + LVY +SW
Sbjct: 109 RGILAEILLSLRFFIYQYGLVYHLTITKKTKSFLVYGVSW 228
Score = 29.0 bits (57), Expect(3) = 6e-046
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1 / +1
Query: 913 DWTNWLFYRGGIGV 872
DW W+ RGGIGV
Sbjct: 1 DWNKWISNRGGIGV 42
>gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_J09 3', mRNA sequence
Length = 834
Score = 144 bits (309), Expect(2) = 2e-043
Identities = 54/93 (58%), Positives = 75/93 (80%)
Frame = -1 / -3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+D+F ILAF+PTGWG++ IA A KP+V++ G W +V+ LAR Y+ MG+++F P+A
Sbjct: 499 MTVQDIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVA 320
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 319 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 221
Score = 55.6 bits (115), Expect(2) = 2e-043
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = -1 / -3
Query: 811 RGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
RG + E +LSLRFFI+Q+G+VYH+ + + + LVY +SW
Sbjct: 772 RGILAEILLSLRFFIYQYGLVYHLTITKKTKSFLVYGVSW 653
>gb|BP932002.1|BP932002 BP932002 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.r 3', mRNA sequence
Length = 587
Score = 176 bits (379), Expect = 2e-043
Identities = 71/100 (71%), Positives = 83/100 (83%)
Frame = -1 / -1
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFI 371
FT S+ D+FAS LAF+ TGW I+SIA+AWK +V LGLW +VR AR+YDAGMG +IF+
Sbjct: 569 FTDSSIPDLFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFV 390
Query: 370 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 251
PIA SWFPF+STFQ+RLLFNQAFSRGLEISLILAGN N
Sbjct: 389 PIAFLSWFPFVSTFQSRLLFNQAFSRGLEISLILAGNKAN 270
Score = 111 bits (236), Expect = 1e-023
Identities = 50/110 (45%), Positives = 62/110 (56%)
Frame = +3 / +1
Query: 201 VHRLMKQGRNCHHQIPAFGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKM 380
+ R + R + + L PARI +IS P LNAWL R WKV+ NGNH++ A+G K+
Sbjct: 220 MRRAISYKRLLIYDLSTLALFPARISEISSPRLNAWLKSRRDWKVETNGNHDKNAIGTKI 399
Query: 381 TIPIPASXXXXXXXTVFHKPNFFTTGFHAMAIEMIPHPVGTNARMEAKTS 530
PIPAS T HKP T F A+AI+ I HPV NAR AK S
Sbjct: 400 NAPIPASYILANSRTESHKPKLQTILFQAIAIDRIVHPVAINARKLAKRS 549
>gb|BP933403.1|BP933403 BP933403 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.r 3', mRNA sequence
Length = 620
Score = 175 bits (377), Expect = 4e-043
Identities = 71/100 (71%), Positives = 82/100 (82%)
Frame = -1 / -2
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFI 371
FT S+ D+FAS LAF+ TGW I+SIA+AWK +V LGLW +VR AR+YDAGMG +IF+
Sbjct: 571 FTDQSIPDLFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFV 392
Query: 370 PIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAGNNPN 251
PIA SWFPF+STFQ RLLFNQAFSRGLEISLILAGN N
Sbjct: 391 PIAFLSWFPFVSTFQPRLLFNQAFSRGLEISLILAGNKAN 272
Score = 116 bits (248), Expect = 3e-025
Identities = 57/131 (43%), Positives = 71/131 (54%)
Frame = +3 / +3
Query: 201 VHRLMKQGRNCHHQIPAFGLLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKM 380
+ R + R + + L PARI +IS P LNAWL R WKV+ NGNH++ A+G K+
Sbjct: 222 MRRAISYKRLLIYDLSTLALFPARISEISSPRLNAWLKSRRGWKVETNGNHDKNAIGTKI 401
Query: 381 TIPIPASXXXXXXXTVFHKPNFFTTGFHAMAIEMIPHPVGTNARMEAKTSLTLSFVNKIA 560
PIPAS T HKP T F A+AI+ I HPV NAR AK S V
Sbjct: 402 NAPIPASYILANSRTESHKPKLQTILFQAIAIDRIVHPVAINARKLAKRSGID*SVKATV 581
Query: 561 RTRAAKTINNA 593
R RAA + N+A
Sbjct: 582 RQRAATSPNDA 614
>gb|CK099401.1|CK099401 A066P21.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A066P21 5', mRNA sequence
Length = 323
Score = 150 bits (323), Expect(2) = 4e-040
Identities = 55/70 (78%), Positives = 67/70 (95%)
Frame = -1 / +1
Query: 1144 IKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLFAPY 965
++F+ENYR+YSRSHFVKG+EV LLLV++LAYG+N+GGA+ YILL++SSW MALSWLFAPY
Sbjct: 70 LEFSENYRLYSRSHFVKGLEVVLLLVVYLAYGYNDGGALSYILLTVSSWFMALSWLFAPY 249
Query: 964 LFNPSGFEWQ 935
LFNPSGFEWQ
Sbjct: 250 LFNPSGFEWQ 279
Score = 105 bits (224), Expect(2) = 3e-024
Identities = 48/68 (70%), Positives = 51/68 (75%)
Frame = +3 / -1
Query: 936 CHSNPDGLNK*GAKSQDNAIIQLLIESKI*PTAPPLLNPYARKITNKSATSIPFTKWLRE 1115
CHSNPDGLNK*GAKSQD AI QLL ++* APP L PYAR T+KS TS P TKWLRE
Sbjct: 278 CHSNPDGLNK*GAKSQDRAINQLLTVRRM*DNAPPSLYPYARYTTSKSTTSSPLTKWLRE 99
Query: 1116 *IR*FSAN 1139
* *FS N
Sbjct: 98 *SL*FSEN 75
Score = 35.0 bits (70), Expect(2) = 4e-040
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1 / +2
Query: 937 QKIVEDFRDWTNWLF 893
++ VEDF DWTNWLF
Sbjct: 278 KQTVEDFSDWTNWLF 322
Score = 27.2 bits (53), Expect(2) = 3e-024
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3 / -3
Query: 897 SQFVQSLKSSTI 932
SQFVQSLKSST+
Sbjct: 318 SQFVQSLKSSTV 283
>gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 3', mRNA sequence
Length = 735
Score = 144 bits (309), Expect(2) = 8e-040
Identities = 54/93 (58%), Positives = 75/93 (80%)
Frame = -1 / -2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+D+F ILAF+PTGWG++ IA A KP+V++ G W +V+ LAR Y+ MG+++F P+A
Sbjct: 494 MTVQDIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVA 315
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 314 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 216
Score = 43.2 bits (88), Expect(2) = 8e-040
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -1 / -2
Query: 778 RFFIFQFGVVYHMNASGGSTALLVYWISW 692
RFFI+Q+G+VYH+ + + + LVY +SW
Sbjct: 734 RFFIYQYGLVYHLTITKKTKSFLVYGVSW 648
>gb|BU894932.1|BU894932 X017A08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 651
Score = 69.8 bits (146), Expect(4) = 3e-038
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = -1 / +3
Query: 988 LSWLFAPYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGVK 869
+SW+ AP++FNPSGF+W K V DF D+ NW++Y+GG+ K
Sbjct: 6 VSWIMAPFVFNPSGFDWLKTVYDFDDFMNWIWYQGGVFAK 125
Score = 59.3 bits (123), Expect(4) = 3e-038
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = -1 / +3
Query: 808 GRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
G++L+ IL LRFF FQ+G+VY + + GST++ VY +SW
Sbjct: 192 GKLLDVILDLRFFFFQYGIVYQLGIAAGSTSIAVYILSW 308
Score = 49.6 bits (102), Expect(4) = 3e-038
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -1 / +3
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKP 455
FT DVF S+LAF+PTGWGI+ IA +P
Sbjct: 453 FTSFKFTDVFTSLLAFIPTGWGILLIAQVLRP 548
Score = 41.4 bits (84), Expect(4) = 3e-038
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = -1 / +3
Query: 436 LWKTVRALARLYDAGMGMVIFIPIAICSW 350
LW+ V ++ARLYD G+++ +P+A SW
Sbjct: 564 LWEAVVSVARLYDILFGVIVMVPVAFLSW 650
>gb|AI166267.1|AI166267 xylem.est.116 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 645
Score = 156 bits (335), Expect = 3e-037
Identities = 58/94 (61%), Positives = 74/94 (78%)
Frame = -1 / +1
Query: 1153 VRHIKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLF 974
V H KFA+NYR+YSRSHFVKG+E+ +LLV++ +G AV Y+L++IS W M +WLF
Sbjct: 304 VFHAKFADNYRLYSRSHFVKGIEMMILLVVYQIFGQPYRSAVAYVLITISMWFMVGTWLF 483
Query: 973 APYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGV 872
AP+LFNPSGFEWQKIV+D+ DW W+ RGGIGV
Sbjct: 484 APFLFNPSGFEWQKIVDDWSDWNKWISNRGGIGV 585
>gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G13 5', mRNA sequence
Length = 686
Score = 144 bits (310), Expect = 8e-034
Identities = 56/94 (59%), Positives = 75/94 (79%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+DV ILAF+PTGWG++ IA A KPVV++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 166 MTVQDVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVA 345
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 260
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+
Sbjct: 346 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGH 447
Score = 102 bits (218), Expect = 4e-021
Identities = 51/126 (40%), Positives = 64/126 (50%)
Frame = +3 / -1
Query: 258 LLPARIRDISKPLLNAWLNRSRVWKVDMNGNHEQMAMGMKMTIPIPASXXXXXXXTVFHK 437
L P R+R+I +PLLNAWLN RVW D GN + A G+ + PI S T
Sbjct: 449 LWPPRMREICRPLLNAWLNSIRVWNSDTKGNQARNATGVNRSKPITISYPRASVRTDPQN 270
Query: 438 PNFFTTGFHAMAIEMIPHPVGTNARMEAKTSLTLSFVNKIARTRAAKTINNATLLTKRRN 617
P TTG A AI+ IP PVG ARM TS T+ + I TR + N L +R
Sbjct: 269 PAR*TTGLQA*AIKSIPQPVGMKARMHTMTSCTVI*GSAIKVTRMDTKVRNIIPLIRRNT 90
Query: 618 NWKCTM 635
+WK +
Sbjct: 89 SWKLAL 72
>gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 3', mRNA sequence
Length = 632
Score = 144 bits (310), Expect = 8e-034
Identities = 56/94 (59%), Positives = 75/94 (79%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+DV ILAF+PTGWG++ IA A KPVV++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 560 MTVQDVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVA 381
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 260
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+
Sbjct: 380 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGH 279
>gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 5', mRNA sequence
Length = 599
Score = 144 bits (310), Expect = 8e-034
Identities = 56/94 (59%), Positives = 75/94 (79%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+DV ILAF+PTGWG++ IA A KPVV++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 73 MTVQDVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVA 252
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAGN 260
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+
Sbjct: 253 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGH 354
>gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_H14 3', mRNA sequence
Length = 677
Score = 144 bits (309), Expect = 1e-033
Identities = 54/93 (58%), Positives = 75/93 (80%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+D+F ILAF+PTGWG++ IA A KP+V++ G W +V+ LAR Y+ MG+++F P+A
Sbjct: 494 MTVQDIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVA 315
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 314 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 216
>gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_N04 3', mRNA sequence
Length = 722
Score = 144 bits (309), Expect = 1e-033
Identities = 54/93 (58%), Positives = 75/93 (80%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+D+F ILAF+PTGWG++ IA A KP+V++ G W +V+ LAR Y+ MG+++F P+A
Sbjct: 494 MTVQDIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVA 315
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 314 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 216
>gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 3', mRNA sequence
Length = 595
Score = 144 bits (309), Expect = 1e-033
Identities = 54/93 (58%), Positives = 75/93 (80%)
Frame = -1 / -2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+D+F ILAF+PTGWG++ IA A KP+V++ G W +V+ LAR Y+ MG+++F P+A
Sbjct: 495 MTVQDIFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVA 316
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 315 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 217
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 143 bits (307), Expect = 2e-033
Identities = 54/93 (58%), Positives = 74/93 (79%)
Frame = -1 / +3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RDV SILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 66 MTIRDVIVSILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 245
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 246 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 344
>gb|DN493190.1|DN493190 X068E11.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X068E11 3', mRNA sequence
Length = 807
Score = 143 bits (306), Expect = 3e-033
Identities = 58/81 (71%), Positives = 69/81 (85%)
Frame = -1 / -3
Query: 475 IAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFS 296
IA+AWK +V LGLW +VR AR+YDAGMG++IF+PIA SWFPF+STFQ+RLLFNQAFS
Sbjct: 637 IAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAFS 458
Query: 295 RGLEISLILAGNNPNAGI*WW 233
RGLEISLILAGN N I*++
Sbjct: 457 RGLEISLILAGNKANVEI*FF 395
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 141 bits (302), Expect = 1e-032
Identities = 53/93 (56%), Positives = 73/93 (78%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RDV ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 684 MTIRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 505
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 504 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 406
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 141 bits (302), Expect = 1e-032
Identities = 53/93 (56%), Positives = 73/93 (78%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RDV ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 20 MTIRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 199
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 200 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 298
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 141 bits (302), Expect = 1e-032
Identities = 53/93 (56%), Positives = 73/93 (78%)
Frame = -1 / -2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RDV ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 685 MTIRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 506
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 505 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 407
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 141 bits (302), Expect = 1e-032
Identities = 53/93 (56%), Positives = 73/93 (78%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RDV ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 670 MTIRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 491
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 490 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 392
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 141 bits (302), Expect = 1e-032
Identities = 53/93 (56%), Positives = 73/93 (78%)
Frame = -1 / -3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RDV ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 687 MTIRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 508
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 507 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 409
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 140 bits (301), Expect = 1e-032
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = -1 / +3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RD+ ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 57 MTIRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 236
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 237 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 335
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 140 bits (301), Expect = 1e-032
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RD+ ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 659 MTIRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 480
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 479 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 381
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 140 bits (301), Expect = 1e-032
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = -1 / -1
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RD+ ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 512 MTIRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 333
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 332 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 234
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 139 bits (299), Expect = 2e-032
Identities = 53/91 (58%), Positives = 71/91 (78%)
Frame = -1 / -2
Query: 535 VRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAIC 356
+RDV ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 678 IRDVIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFL 499
Query: 355 SWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 498 AWFPFVSEFQTRMLFNQAFSRGLQISRILGG 406
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 139 bits (298), Expect = 3e-032
Identities = 52/93 (55%), Positives = 72/93 (77%)
Frame = -1 / +3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RD+ ILAF P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 93 MTIRDIIVCILAFCPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGVLLFTPVA 272
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+WFPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 273 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 371
>gb|DN503210.1|DN503210 X068E11.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X068E11 5', mRNA sequence
Length = 524
Score = 135 bits (290), Expect = 4e-031
Identities = 54/71 (76%), Positives = 63/71 (88%)
Frame = -1 / +3
Query: 475 IAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFS 296
IA+AWK +V LGLW +VR AR+YDAGMG++IF+PIA SWFPF+STFQ+RLLFNQAFS
Sbjct: 312 IAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAFS 491
Query: 295 RGLEISLILAG 263
RGLEISLILAG
Sbjct: 492 RGLEISLILAG 524
>gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 133 bits (286), Expect = 2e-030
Identities = 51/93 (54%), Positives = 72/93 (77%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
+++RD+ ILAF+P+GWG++ IA A KP+++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 176 MTIRDIIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVA 355
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+ FPF+S FQTR+LFNQAFSRGL+IS IL G
Sbjct: 356 FLA*FPFVSEFQTRMLFNQAFSRGLQISRILGG 454
>gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 426
Score = 87.2 bits (184), Expect(2) = 9e-030
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = -1 / +2
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
++V+DV ILAF+PTGWG++ IA A KPVV++ G W +VR LAR Y+ MG+++F P+A
Sbjct: 74 MTVQDVIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVA 253
Query: 361 ICSWFPF 341
PF
Sbjct: 254 FPRLVPF 274
Score = 63.8 bits (133), Expect(2) = 9e-030
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -1 / +3
Query: 355 SWFPFISTFQTRLLFNQAFSRGLEISLILAGN 260
+WFPF+S FQTR+LFNQAFSRGL+IS IL G+
Sbjct: 261 AWFPFVSEFQTRMLFNQAFSRGLQISRILGGH 356
>gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB32BPD05 3', mRNA sequence
Length = 579
Score = 130 bits (279), Expect = 1e-029
Identities = 51/93 (54%), Positives = 68/93 (73%)
Frame = -1 / -3
Query: 541 LSVRDVFASILAFVPTGWGIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIA 362
LS++D+ LAF+PTGWG+I IA A +P +++ GLW R LAR YD GM +V+F P+A
Sbjct: 412 LSMKDLIVCCLAFLPTGWGLILIAQAARPKIEETGLWHFTRVLARAYDYGMSVVLFAPVA 233
Query: 361 ICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
+ +W P IS FQTR LFN+AF+R L+I ILAG
Sbjct: 232 VLAWLPVISAFQTRFLFNEAFNRHLQIQPILAG 134
>gb|CN518891.1|CN518891 GQ0102.B3_E01 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_E01 5', mRNA sequence
Length = 508
Score = 58.3 bits (121), Expect(4) = 8e-026
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = -1 / +1
Query: 811 RGRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
RG I+E +LSLRFFIFQ+G+VYH++ + + LVY +SW
Sbjct: 145 RGIIVEILLSLRFFIFQYGLVYHLSIVDKTKSFLVYGVSW 264
Score = 52.8 bits (109), Expect(4) = 8e-026
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -1 / +1
Query: 949 GFEWQKIVEDFRDWTNWLFYRGGIGV 872
GFEWQKI++D+ DW W+ RGGIGV
Sbjct: 1 GFEWQKILDDYTDWNKWINNRGGIGV 78
Score = 41.8 bits (85), Expect(4) = 8e-026
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 541 LSVRDVFASILAFVPTGWGIISIA 470
+++RDV SILAF+P+GWG++ IA
Sbjct: 418 MTIRDVIVSILAFLPSGWGLLLIA 489
Score = 23.5 bits (45), Expect(4) = 8e-026
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3 / +3
Query: 878 WC*RRRKLGSLVGR 837
WC R KLG LVG+
Sbjct: 72 WCSSR*KLGILVGK 113
>gb|BU896476.1|BU896476 X041D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 467
Score = 117 bits (251), Expect = 1e-025
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = -1 / +2
Query: 1153 VRHIKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLF 974
V H KFA+NYR+YSRSHFVKG+E+ +LL++F +G + G Y+L++IS W M +WLF
Sbjct: 251 VFHAKFADNYRLYSRSHFVKGIELMILLLVFHIFGRSYRGVFAYVLITISMWFMVGTWLF 430
Query: 973 APYLFNPSGFEW 938
AP+LFNPSGFEW
Sbjct: 431 APFLFNPSGFEW 466
>gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_K15 3', mRNA sequence
Length = 495
Score = 102 bits (218), Expect(2) = 1e-025
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = -1 / -3
Query: 487 GIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFN 308
G A A KP+V++ G W +V+ LAR Y+ MG+++F P+A +WFPF S FQTR+LFN
Sbjct: 448 GCF*FAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFGSEFQTRMLFN 269
Query: 307 QAFSRGLEISLILAG 263
QAFSRGL+IS I G
Sbjct: 268 QAFSRGLQISRIFGG 224
Score = 34.5 bits (69), Expect(2) = 1e-025
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1 / -2
Query: 532 RDVFASILAFVPTGWGIISI 473
R F ILAF+PTGWG++ I
Sbjct: 494 RTSFVGILAFIPTGWGMLLI 435
>gb|BU891564.1|BU891564 P052B10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 558
Score = 74.4 bits (156), Expect(3) = 3e-025
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = -1 / +2
Query: 436 LWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
LW+ V ++ARLYD G+++ +P+A SW P + QT +LFN+AFSRGL I + G
Sbjct: 383 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPAFQSMQTTILFNEAFSRGLRIFQLFTG 556
Score = 46.9 bits (96), Expect(3) = 3e-025
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -1 / +2
Query: 547 TKLSVRDVFASILAFVPTGWGIISIAMAWKP 455
T DVF S+LAF+PTGWGI+ IA +P
Sbjct: 275 TSFKFTDVFTSLLAFIPTGWGILLIAQVLRP 367
Score = 35.9 bits (72), Expect(3) = 3e-025
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1 / +2
Query: 808 GRILETILSLRFFIFQFGVVYHMNASGGSTALLVYWISW 692
G++ + +F +G+VY + + GST + VY +SW
Sbjct: 11 GKVTGCNIGPSLLLF*YGIVYQLGIAAGSTTIAVYILSW 127
>gb|CK116341.1|CK116341 B010P30 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B010P30 5', mRNA sequence
Length = 297
Score = 108 bits (231), Expect = 6e-023
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = -1 / +1
Query: 1153 VRHIKFAENYRIYSRSHFVKGMEVALLLVIFLAYGFNNGGAVGYILLSISSWIMALSWLF 974
V H KFA+NYR+YSRSHFVKG+E+ +LL++F +G + G Y+L++IS W M +WLF
Sbjct: 34 VFHAKFADNYRLYSRSHFVKGIELMILLLVFHIFGRSYRGVFAYVLITISMWFMVGTWLF 213
Query: 973 APYLFNPSGFEWQKIV 926
AP+LFNPSG ++ +
Sbjct: 214 APFLFNPSGLSGKRFL 261
>gb|DT485310.1|DT485310 WS02527.B21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_N20 3', mRNA sequence
Length = 840
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -1 / -3
Query: 436 LWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
LW+ V ++ARLYD G+++ +P+A SW P + QTR+LFN+AFSRGL I + G
Sbjct: 589 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTG 416
Score = 49.6 bits (102), Expect(2) = 2e-022
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -1 / -3
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKP 455
FT DVF S+LAF+PTGWGI+ IA +P
Sbjct: 700 FTSFKFTDVFTSLLAFIPTGWGILLIAQVLRP 605
>gb|CV253436.1|CV253436 WS0221.B21_O23 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_O23 3', mRNA sequence
Length = 741
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -1 / -2
Query: 436 LWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
LW+ V ++ARLYD G+++ +P+A SW P + QTR+LFN+AFSRGL I + G
Sbjct: 587 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTG 414
Score = 49.6 bits (102), Expect(2) = 2e-022
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -1 / -2
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKP 455
FT DVF S+LAF+PTGWGI+ IA +P
Sbjct: 698 FTSFKFTDVFTSLLAFIPTGWGILLIAQVLRP 603
>gb|CF228442.1|CF228442 PtaXM0013A9A0901 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 722
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -1 / +2
Query: 436 LWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
LW+ V ++ARLYD G+++ +P+A SW P + QTR+LFN+AFSRGL I + G
Sbjct: 155 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTG 328
Score = 49.6 bits (102), Expect(2) = 2e-022
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -1 / +2
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKP 455
FT DVF S+LAF+PTGWGI+ IA +P
Sbjct: 44 FTSFKFTDVFTSLLAFIPTGWGILLIAQVLRP 139
>gb|CF233701.1|CF233701 PtaJXO0026F5F0511 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 654
Score = 76.7 bits (161), Expect(2) = 2e-022
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -1 / +1
Query: 436 LWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFNQAFSRGLEISLILAG 263
LW+ V ++ARLYD G+++ +P+A SW P + QTR+LFN+AFSRGL I + G
Sbjct: 205 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTG 378
Score = 49.6 bits (102), Expect(2) = 2e-022
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -1 / +1
Query: 550 FTKLSVRDVFASILAFVPTGWGIISIAMAWKP 455
FT DVF S+LAF+PTGWGI+ IA +P
Sbjct: 94 FTSFKFTDVFTSLLAFIPTGWGILLIAQVLRP 189
>gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 371
Score = 106 bits (227), Expect = 2e-022
Identities = 41/77 (53%), Positives = 57/77 (74%)
Frame = -1 / +3
Query: 487 GIISIAMAWKPVVKKLGLWKTVRALARLYDAGMGMVIFIPIAICSWFPFISTFQTRLLFN 308
G++ IA A KPV ++ G W +VR LAR Y+ MG+++F P+A +WFPF+S FQTR+L N
Sbjct: 3 GMLLIAQACKPVAQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLVN 182
Query: 307 QAFSRGLEISLILAGNN 257
QAF+RGL+ S L G+N
Sbjct: 183 QAFNRGLQTSSTLGGHN 233
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 636,571,603
Number of Sequences: 369679
Number of extensions: 10173470
Number of successful extensions: 51069
Number of sequences better than 1.0e-020: 57
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 16246736637
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)