TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012915.2.2
(621 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 114 3e-043
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 112 1e-042
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 112 1e-042
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 112 1e-042
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 112 1e-042
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 112 1e-042
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 112 1e-042
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 112 4e-042
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 112 9e-034
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 120 7e-032
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 119 1e-031
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 118 2e-030
gb|BU884348.1|BU884348 R009D12 Populus root cDNA library Po... 84 7e-028
gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Popul... 104 3e-027
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 106 2e-025
gb|DT524318.1|DT524318 WS02042.C21.1_E22 PTxN-IB-N-A-11 Pop... 84 3e-022
gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Po... 101 4e-021
gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Po... 96 6e-021
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 114 bits (244), Expect(4) = 3e-043
Identities = 44/77 (57%), Positives = 56/77 (72%)
Frame = +2 / +3
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ I+ RVPC +PG V FHV+ GS YFA L
Sbjct: 87 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 266
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDGD+ V+L +
Sbjct: 267 VEYEDGDGDLKSVELKQ 317
Score = 44.6 bits (91), Expect(4) = 3e-043
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / +3
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 336 WVPMQKSWGAVWKLDAGSLLRAPLSIK 416
Score = 42.8 bits (87), Expect(4) = 3e-043
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / +3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 420 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 515
Score = 29.0 bits (57), Expect(4) = 3e-043
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / +3
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 3 SSNAACSGNPVTVVITD 53
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 112 bits (240), Expect(4) = 1e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -1
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 407 VEYEDGDGELKSVELKQ 357
Score = 44.6 bits (91), Expect(4) = 1e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -1
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIK 258
Score = 42.8 bits (87), Expect(4) = 1e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 254 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 159
Score = 29.0 bits (57), Expect(4) = 1e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -1
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 671 SSNAACSGNPVTVVITD 621
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 112 bits (240), Expect(4) = 1e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -3
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 639 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 460
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 459 VEYEDGDGELKSVELKQ 409
Score = 44.6 bits (91), Expect(4) = 1e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -3
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 390 WVPMQKSWGAVWKLDAGSLLRAPLSIK 310
Score = 42.8 bits (87), Expect(4) = 1e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 306 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 211
Score = 29.0 bits (57), Expect(4) = 1e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -3
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 723 SSNAACSGNPVTVVITD 673
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 112 bits (240), Expect(4) = 1e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -2
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 407 VEYEDGDGELKSVELKQ 357
Score = 44.6 bits (91), Expect(4) = 1e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -2
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIK 258
Score = 42.8 bits (87), Expect(4) = 1e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 254 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 159
Score = 29.0 bits (57), Expect(4) = 1e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 671 SSNAACSGNPVTVVITD 621
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 112 bits (240), Expect(4) = 1e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -1
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 567 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 388
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 387 VEYEDGDGELKSVELKQ 337
Score = 44.6 bits (91), Expect(4) = 1e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -1
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 318 WVPMQKSWGAVWKLDAGSLLRAPLSIK 238
Score = 42.8 bits (87), Expect(4) = 1e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 234 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 139
Score = 29.0 bits (57), Expect(4) = 1e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -1
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 651 SSNAACSGNPVTVVITD 601
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 112 bits (240), Expect(4) = 1e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -3
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 566 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 387
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 386 VEYEDGDGELKSVELKQ 336
Score = 44.6 bits (91), Expect(4) = 1e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -3
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 317 WVPMQKSWGAVWKLDAGSLLRAPLSIK 237
Score = 42.8 bits (87), Expect(4) = 1e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -3
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 233 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 138
Score = 29.0 bits (57), Expect(4) = 1e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -3
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 650 SSNAACSGNPVTVVITD 600
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 112 bits (240), Expect(4) = 1e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -2
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 591 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 412
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 411 VEYEDGDGELKSVELKQ 361
Score = 44.6 bits (91), Expect(4) = 1e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -2
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 342 WVPMQKSWGAVWKLDAGSLLRAPLSIK 262
Score = 42.8 bits (87), Expect(4) = 1e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 258 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 163
Score = 29.0 bits (57), Expect(4) = 1e-042
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 675 SSNAACSGNPVTVVITD 625
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 112 bits (240), Expect(4) = 4e-042
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2 / -1
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 663 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 484
Query: 281 VEYENGDGDVVQVDLME 331
VEYE+GDG++ V+L +
Sbjct: 483 VEYEDGDGELKSVELKQ 433
Score = 44.6 bits (91), Expect(4) = 4e-042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2 / -1
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
W PM +SWG++W+LD+ L+ P SI+
Sbjct: 414 WVPMQKSWGAVWKLDAGSLLRAPLSIK 334
Score = 42.8 bits (87), Expect(4) = 4e-042
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
T +SGKT+VA VIP W P YRS+V ++
Sbjct: 330 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 235
Score = 27.2 bits (53), Expect(4) = 4e-042
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2 / -1
Query: 29 HAACSGRTETVVITD 73
+AACSG TVVITD
Sbjct: 741 NAACSGNPVTVVITD 697
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 112 bits (239), Expect(3) = 9e-034
Identities = 43/75 (57%), Positives = 55/75 (73%)
Frame = +2 / +2
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ IQ RVPC +PG V FHV+ GS YFA +
Sbjct: 452 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 631
Query: 281 VEYENGDGDVVQVDL 325
VEYE+GDG++ V+L
Sbjct: 632 VEYEDGDGELKSVEL 676
Score = 40.0 bits (81), Expect(3) = 9e-034
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2 / +1
Query: 347 WTPMSQSWGSIWRLDSNHRLQPP 415
W PM +SWG++W+LD+ L+ P
Sbjct: 700 WVPMQKSWGAVWKLDAGSLLRAP 768
Score = 29.0 bits (57), Expect(3) = 9e-034
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 368 SSNAACSGNPVTVVITD 418
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 120 bits (256), Expect(2) = 7e-032
Identities = 44/93 (47%), Positives = 59/93 (63%)
Frame = +2 / -2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFGR+A G N LR G I + + R PC++PG + FHV EGST + ++LV
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILV 619
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+GDGDV + + E W M+ WG+ W
Sbjct: 618 EFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 520
Score = 36.8 bits (74), Expect(2) = 7e-032
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2 / -2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +G+TL AR+VIP NW P Y S + +
Sbjct: 474 TTLTTGRTLSAREVIPRNWAPKATYTSRLNF 382
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 119 bits (255), Expect(2) = 1e-031
Identities = 44/93 (47%), Positives = 58/93 (62%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFGR+A G N LR G I + + R PC +PG + FHV EGST + ++LV
Sbjct: 67 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCNYPGKNIAFHVNEGSTDYWLSILV 246
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+GDGDV + + E W M+ WG+ W
Sbjct: 247 EFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 345
Score = 36.8 bits (74), Expect(2) = 1e-031
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +G+TL AR+VIP NW P Y S + +
Sbjct: 391 TTLTTGRTLSAREVIPRNWTPKATYTSRLNF 483
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 118 bits (252), Expect(2) = 2e-030
Identities = 43/93 (46%), Positives = 59/93 (63%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFGR+A G N LR G + + + R PC++PG + FHV EGST + ++LV
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 399
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIW 382
E+E+GDGDV + + E W M+ WG+ W
Sbjct: 400 EFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 498
Score = 33.6 bits (67), Expect(2) = 2e-030
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T + +TL AR+VIP NW P Y S + +
Sbjct: 544 TTLSTRRTLSAREVIPRNWAPKATYTSRLNF 636
>gb|BU884348.1|BU884348 R009D12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 663
Score = 83.5 bits (176), Expect(3) = 7e-028
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +2 / +1
Query: 194 FARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWG 373
F R PC++PG + FHV EGST + ++LVE+E+GDGDV + + E W M+ WG
Sbjct: 313 FCRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLEMNHVWG 492
Query: 374 SIW 382
+ W
Sbjct: 493 ATW 501
Score = 42.8 bits (87), Expect(3) = 7e-028
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFAR 202
HFDLSG AFGR+A G N LR G + + + R
Sbjct: 47 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRR 145
Score = 37.3 bits (75), Expect(3) = 7e-028
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2 / +1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +G+TL AR+VIP NW P Y S + +
Sbjct: 547 TTLSTGRTLSAREVIPRNWAPKATYTSRLNF 639
>gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_D05 3', mRNA sequence
Length = 803
Score = 104 bits (222), Expect(2) = 3e-027
Identities = 38/86 (44%), Positives = 53/86 (61%)
Frame = +2 / -1
Query: 125 AFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDG 304
AFGR+A G N LR G I + + R PC++PG + FHV EGST + ++LVE+E+GDG
Sbjct: 800 AFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILVEFEDGDG 621
Query: 305 DVVQVDLMEKRARRWTPMSQSWGSIW 382
DV + + E W M+ WG+ W
Sbjct: 620 DVGSMHIREAGGTEWLEMNHVWGATW 543
Score = 36.8 bits (74), Expect(2) = 3e-027
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2 / -1
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
T +G+TL AR+VIP NW P Y S + +
Sbjct: 497 TTLTTGRTLSAREVIPRNWAPKATYTSRLNF 405
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 106 bits (226), Expect(2) = 2e-025
Identities = 41/69 (59%), Positives = 51/69 (73%)
Frame = +2 / +2
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ I+ RVPC +PG KV FHV+ GS YFA L
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKKVTFHVDSGSNPYYFATL 610
Query: 281 VEYENGDGD 307
VE ++GDGD
Sbjct: 611 VE*QHGDGD 637
Score = 29.0 bits (57), Expect(2) = 2e-025
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITD 73
S +AACSG TVVITD
Sbjct: 347 SSNAACSGNPVTVVITD 397
>gb|DT524318.1|DT524318 WS02042.C21.1_E22 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_E22 3', mRNA sequence
Length = 775
Score = 83.5 bits (176), Expect(2) = 3e-022
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +2 / -2
Query: 176 GIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRARRWTP 355
G I + + R PC++PG + FHV EGST + ++LVE+E+GDGDV + + E W
Sbjct: 759 GEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLE 580
Query: 356 MSQSWGSIW 382
M+ WG+ W
Sbjct: 579 MNHLWGANW 553
Score = 40.9 bits (83), Expect(2) = 3e-022
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2 / -2
Query: 428 TRTDSGKTLVARDVIPLNWRPNTFYRSIVQYSS*IPQFISCSY 556
T +G+TL ARDVIP NW P Y S + + * +F + S+
Sbjct: 507 TTLSTGRTLFARDVIPRNWVPKATYTSRLNFFH*NAKFQASSF 379
>gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 624
Score = 101 bits (215), Expect = 4e-021
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +2 / +1
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSG AFGR+A G N LR G + + + R PC++PG + FHV EGST + ++LV
Sbjct: 169 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 348
Query: 284 EYENGDGDVVQVDLME 331
E+E+GDGDV + + E
Sbjct: 349 EFEDGDGDVGSMHIRE 396
>gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043E09 5', mRNA sequence
Length = 621
Score = 96.4 bits (204), Expect(2) = 6e-021
Identities = 37/63 (58%), Positives = 45/63 (71%)
Frame = +2 / +2
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
+HFDLSGTAFG +A G+ D LR AG++ I+ RVPC +PG V FHV+ GS YFA L
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 610
Query: 281 VEY 289
VEY
Sbjct: 611 VEY 619
Score = 24.0 bits (46), Expect(2) = 6e-021
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITD 73
S +AA SG TVVITD
Sbjct: 347 SSNAAWSGNPVTVVITD 397
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 187,467,060
Number of Sequences: 369679
Number of extensions: 2068340
Number of successful extensions: 29988
Number of sequences better than 1.0e-020: 19
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7587135145
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)