TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV261342.1|CV261342 WS02016.B21_I08 PTxN-IB-N-A-11 Popul... 351 7e-096
gb|CF234274.1|CF234274 PtaJXO4E7E0709 Poplar cDNA library f... 348 3e-095
gb|CV245165.1|CV245165 WS0256.B21_K13 PT-MB-N-A-15 Populus ... 292 4e-078
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 219 3e-056
gb|BU891968.1|BU891968 P057F09 Populus petioles cDNA librar... 219 3e-056
gb|CV278214.1|CV278214 WS0145.B21_M14 PTxD-IL-A-5 Populus t... 210 1e-053
gb|CN520599.1|CN520599 GQ0106.B3_F22 GQ010 Populus trichoca... 203 1e-052
gb|CA825793.1|CA825793 R67F02 two-month-old roots from clon... 88 2e-042
gb|DT487402.1|DT487402 WS02533.B21_J15 PT-MB-N-A-15 Populus... 142 2e-040
gb|BU868155.1|BU868155 M112A11 Populus flower cDNA library ... 139 4e-033
gb|BU874173.1|BU874173 Q065B02 Populus flower cDNA library ... 126 1e-030
gb|BI784491.1|BI784491 UNIAB04P70X Hybrid aspen plasmid lib... 132 6e-030
gb|CK093245.1|CK093245 G113P10.3pR Populus tension wood cDN... 120 2e-026
gb|CK098265.1|CK098265 A009P80.5pR Hybrid aspen plasmid lib... 104 1e-021
>gb|CV261342.1|CV261342 WS02016.B21_I08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I08 3', mRNA sequence
Length = 933
Score = 351 bits (760), Expect = 7e-096
Identities = 151/226 (66%), Positives = 174/226 (76%)
Frame = +1 / -2
Query: 322 MKAIKQRMEKDIDEVGKIAPQAKTKVDELERDNLSNRQKPGCGKGSAVDRSREQTTGAVK 501
MK IKQRMEKD+DEVGKIA K+K++EL+++NLSNRQKPGCGKG+ VDRSR TT A+K
Sbjct: 932 MKGIKQRMEKDVDEVGKIARSIKSKLEELDKENLSNRQKPGCGKGTGVDRSRTSTTIALK 753
Query: 502 KKLKERMDDFQTLREAIRQXXXXXXXXXXFTVTGNRPDEETIDDLIETGKSEQIFKDAIQ 681
KKLK++M +FQTLRE I Q FTVTG R DEETID LIETG SEQIF+ AIQ
Sbjct: 752 KKLKDKMAEFQTLRENIHQEYREVVERRVFTVTGTRADEETIDTLIETGDSEQIFQKAIQ 573
Query: 682 HQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLVEAQGDMINNIETHVSNAT 861
QGRGQI DT+AEIQERHDAVRDLERKLL+LQQIF+DMAVLV+AQGDM++NIE+ VSNA
Sbjct: 572 EQGRGQITDTLAEIQERHDAVRDLERKLLDLQQIFLDMAVLVDAQGDMLDNIESQVSNAV 393
Query: 862 NHIQQGVSALQNAKKLQRNSRKWMCYXXXXXXXXXXXXXXXXXQPW 999
+H+Q G ALQ AKKLQRNSRKWMC +PW
Sbjct: 392 DHVQSGNVALQKAKKLQRNSRKWMCIAIIILLIIVAIIVVTVLKPW 255
Score = 275 bits (595), Expect = 4e-073
Identities = 133/202 (65%), Positives = 142/202 (70%)
Frame = -3 / +1
Query: 926 FLEFLCSFFAFWSALTPCCMWLVAFETWVSMLLIMSPCASTRTAMSMNICCNSRSFLSRS 747
FLEFLC+FFAFW A P C AFET SML MSPCAST+TA+S ICC SRSFLSRS
Sbjct: 328 FLEFLCNFFAFWRATFPDCT*STAFETCDSMLSSMSPCASTKTAISRKICCKSRSFLSRS 507
Query: 746 LTASCRSCISATVSSIWPLP*CWIASLNICSLFPXXXXXXXXXXSGRLPVTVKTLLSTTS 567
LTAS RS ISA VS IWP P IA ICSL P S +PVTVKT LSTTS
Sbjct: 508 LTASWRS*ISAKVSVIWPRPCS*IAF*KICSLSPVSINVSIVSSSALVPVTVKTRLSTTS 687
Query: 566 RYSCLIASLKV*KSSIRSFNFFFTAPVVCSLDRSTAEPFPHPGFCLFDRLSLSSSSTFVF 387
RYS + SL+V* S+I SFNFFF A VV LDRST P PHPGFCL D+ SLSSSS+F F
Sbjct: 688 RYS*WMFSLRV*NSAILSFNFFFKAIVVEVLDRSTPVPLPHPGFCLLDKFSLSSSSSFDF 867
Query: 386 A*GAIFPTSSISFSIRCLIAFM 321
AIFPTSS SFSIRCLI FM
Sbjct: 868 IERAIFPTSSTSFSIRCLIPFM 933
Score = 120 bits (257), Expect(2) = 6e-032
Identities = 61/139 (43%), Positives = 82/139 (58%)
Frame = -2 / +3
Query: 738 IMSLLYFSNSV*YLASSLMLDSIFEYLLTFSGLYQVINCLFIRTITSYSKNPSFDNLSIL 559
IM+LL F S+ YLAS L L+ + L T S L Q +N LFI + + + KN +NL +L
Sbjct: 516 IMALLNFCQSICYLASPLFLNCFLKNLFTVSSLNQCVNRLFICSCSRHCKNTPLNNLPVL 695
Query: 558 LPDCFSQGLKIIHPFLQFLFHCXXXXXXXSVHGRTLSTSRFLPIR*VISFQFINFCLCLR 379
L D F + LK H QFLF SV+ + +TSR LPIR*++ +F+ F L
Sbjct: 696 LMDVFPKSLKFSHLVFQFLFQGYSS*GS*SVYTCSFTTSRLLPIR*ILFVKFLEF*LY*T 875
Query: 378 SNFPHFINIFLHPLLNCFH 322
SNF +FI+IFLH L + FH
Sbjct: 876 SNFSNFIDIFLHSLFDSFH 932
Score = 107 bits (228), Expect = 2e-022
Identities = 65/154 (42%), Positives = 87/154 (56%)
Frame = +2 / -3
Query: 335 SSGWRKILMKWGKLLLRQRQKLMNWKEITYRIGKNLDVERVLPWTDQESKLLEQ*KRN*R 514
+S WRK+ MK KLL++ Q N + Y IG++ DV + TDQE +LL *KRN*+
Sbjct: 919 NSEWRKMSMKLEKLLVQ*SQNSRNLTKRIYLIGRSRDVVKEQV*TDQEPQLL*P*KRN*K 740
Query: 515 NGWMIFRP*EKQSGKSIERLSKEGFLL*LVIVLMKRQLMT**RPEKVSKYSKMLSNIREE 694
W+ FR K S KS RL + FL * MKR+L * R E V+K+ + + E
Sbjct: 739 TRWLNFRLLGKTSIKSTGRLLRGVFLQ*REQEQMKRRLTH*LRLETVNKFFRKQFRNKGE 560
Query: 695 ARY*TLLLKYRSDMML*GI*RGSFWSCNRYSWTW 796
AR L K++S MM I RG+FW+ NR+ W W
Sbjct: 559 AR*QILWQKFKSAMMQSEIWRGNFWTYNRFFWIW 458
Score = 37.7 bits (76), Expect(2) = 6e-032
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -2 / +3
Query: 942 GVAHPLPRIPLQFLRVLERAHTLLYVVGGVRDMGLDVVDHVSLRLNKNCHVHE 784
G AHP P +PL L +LE L+++ + D+ VV HV L ++++ H+ +
Sbjct: 312 GNAHPFPGVPL*LLCLLESNIP*LHMIYCI*DL*FYVVKHVPLCIHQDSHIQK 470
>gb|CF234274.1|CF234274 PtaJXO4E7E0709 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 752
Score = 348 bits (755), Expect = 3e-095
Identities = 153/229 (66%), Positives = 176/229 (76%)
Frame = +1 / +1
Query: 250 KLSNLLNKLXTANEESXXVTKASSMKAIKQRMEKDIDEVGKIAPQAKTKVDELERDNLSN 429
KL LL KL A+EES VTKA +MK IKQRMEKD+DEVGKIA K+K++EL+++NLSN
Sbjct: 4 KLDKLLKKLQDAHEESKXVTKAPAMKGIKQRMEKDVDEVGKIARSIKSKLEELDKENLSN 183
Query: 430 RQKPGCGKGSAVDRSREQTTGAVKKKLKERMDDFQTLREAIRQXXXXXXXXXXFTVTGNR 609
RQKPGCGKG+ V RSR TT A+KKKLK++M +FQTLRE I Q FTVTG R
Sbjct: 184 RQKPGCGKGTGVXRSRTSTTIALKKKLKDKMAEFQTLRENIHQEYREVVERRVFTVTGTR 363
Query: 610 PDEETIDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFM 789
DEETID LIETG SEQIF+ AIQ QGRGQI DT+AEIQERHDAVRDLERKLL+LQQIF+
Sbjct: 364 ADEETIDTLIETGDSEQIFQKAIQEQGRGQITDTLAEIQERHDAVRDLERKLLDLQQIFL 543
Query: 790 DMAVLVEAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQRNSRKWMC 936
DMAVLV+AQGDM++NI + VSNA H+ G QRNS KWMC
Sbjct: 544 DMAVLVDAQGDMLDNIXSQVSNAVXHVXSGXCCSYKGXXFQRNSXKWMC 690
Score = 261 bits (564), Expect = 7e-069
Identities = 135/226 (59%), Positives = 145/226 (64%)
Frame = -3 / -1
Query: 926 FLEFLCSFFAFWSALTPCCMWLVAFETWVSMLLIMSPCASTRTAMSMNICCNSRSFLSRS 747
F EFL +P AFET ML MSPCAST+TA+S ICC SRSFLSRS
Sbjct: 680 FXEFL*XXLPL*EQXSPDXT*XTAFETCDXMLSSMSPCASTKTAISRKICCKSRSFLSRS 501
Query: 746 LTASCRSCISATVSSIWPLP*CWIASLNICSLFPXXXXXXXXXXSGRLPVTVKTLLSTTS 567
LTAS RS ISA VS IWP P IA ICSL P S +PVTVKT LSTTS
Sbjct: 500 LTASWRS*ISAKVSVIWPRPCS*IAF*KICSLSPVSINVSIVSSSALVPVTVKTRLSTTS 321
Query: 566 RYSCLIASLKV*KSSIRSFNFFFTAPVVCSLDRSTAEPFPHPGFCLFDRLSLSSSSTFVF 387
RYS + SL+V* S+I SFNFFF A VV LDR T P PHPGFCL D+ SLSSSS+F F
Sbjct: 320 RYS*WMFSLRV*NSAILSFNFFFKAIVVEVLDRXTPVPLPHPGFCLLDKFSLSSSSSFDF 141
Query: 386 A*GAIFPTSSISFSIRCLIAFMELAFVTXXDSSFAVWSLFNRFDSF 249
AIFPTSS SFSIRCLI FM A VT DSS A WS + SF
Sbjct: 140 IERAIFPTSSTSFSIRCLIPFMAGALVTXXDSSCASWSFLSNLSSF 3
Score = 129 bits (276), Expect(2) = 7e-033
Identities = 68/163 (41%), Positives = 93/163 (57%)
Frame = -2 / -3
Query: 738 IMSLLYFSNSV*YLASSLMLDSIFEYLLTFSGLYQVINCLFIRTITSYSKNPSFDNLSIL 559
IM+LL F S+ YLAS L L+ + L S L Q +N LFI + + + KN +NL +L
Sbjct: 492 IMALLNFCQSICYLASPLFLNCFLKNLFAVSSLNQCVNRLFICSCSRHCKNTPLNNLPVL 313
Query: 558 LPDCFSQGLKIIHPFLQFLFHCXXXXXXXSVHGRTLSTSRFLPIR*VISFQFINFCLCLR 379
L D F + LK H QFLF SV+ + +TSR LPIR*++ +F+ F L
Sbjct: 312 LMDVFPKSLKFSHLVFQFLFQGYSS*GS*SVYTCSFTTSRLLPIR*ILFVKFLEF*LY*T 133
Query: 378 SNFPHFINIFLHPLLNCFHGTCFCNXXGFLICSXELIQ*I*QL 250
S+F +FINIFLH L + FHG + L+C EL + + QL
Sbjct: 132 SDFSNFINIFLHSLFDSFHGRSLGHXLXLLMCILELFEQLVQL 4
Score = 106 bits (226), Expect = 3e-022
Identities = 64/154 (41%), Positives = 86/154 (55%)
Frame = +2 / +2
Query: 335 SSGWRKILMKWGKLLLRQRQKLMNWKEITYRIGKNLDVERVLPWTDQESKLLEQ*KRN*R 514
+S WRK+LMK K L++ Q N + Y IG++ DV + TDQE +LL *KRN*+
Sbjct: 89 NSEWRKMLMKLEKSLVQ*SQNSRNLTKRIYLIGRSRDVVKEQVXTDQEPQLL*P*KRN*K 268
Query: 515 NGWMIFRP*EKQSGKSIERLSKEGFLL*LVIVLMKRQLMT**RPEKVSKYSKMLSNIREE 694
W+ FR K S KS RL + FL * MKR+L * R E +K+ + + E
Sbjct: 269 TRWLNFRLLGKTSIKSTGRLLRGVFLQ*REQEQMKRRLTH*LRLETANKFFRKQFRNKGE 448
Query: 695 ARY*TLLLKYRSDMML*GI*RGSFWSCNRYSWTW 796
AR L K++S MM I RG+FW+ NR+ W W
Sbjct: 449 AR*QILWQKFKSAMMQSEIWRGNFWTYNRFFWIW 550
Score = 32.2 bits (64), Expect(2) = 7e-033
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2 / -3
Query: 942 GVAHPLPRIPLQFLRVLERAHTLLYVVGGVRDMGLDVVDHVSLRLNKNCHVHE 784
G AHP P +PL+ + ++ + D+ VV HV L ++++ H+ +
Sbjct: 696 GKAHPFPGVPLKXXAFVRATXP*XHMXYXI*DL*XYVVKHVPLCIHQDSHIQK 538
>gb|CV245165.1|CV245165 WS0256.B21_K13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_K13 3', mRNA sequence
Length = 887
Score = 292 bits (631), Expect = 4e-078
Identities = 132/204 (64%), Positives = 152/204 (74%)
Frame = +1 / +2
Query: 166 EMGMHQADASDNLKDFLKKVDAIESIIAKLSNLLNKLXTANEESXXVTKASSMKAIKQRM 345
++ M A L+ F KKV IE KL LL KL A+EES VTKA +MK IKQRM
Sbjct: 275 DIEMGMNSADLGLESFFKKVQEIEKQNEKLDKLLKKLQDAHEESKAVTKAPAMKGIKQRM 454
Query: 346 EKDIDEVGKIAPQAKTKVDELERDNLSNRQKPGCGKGSAVDRSREQTTGAVKKKLKERMD 525
EKD+DEVGKIA K+K++EL+++NLSNRQKPGCGKG+ VDRSR TT A+KKKLK++M
Sbjct: 455 EKDVDEVGKIARSIKSKLEELDKENLSNRQKPGCGKGTGVDRSRTSTTIALKKKLKDKMA 634
Query: 526 DFQTLREAIRQXXXXXXXXXXFTVTGNRPDEETIDDLIETGKSEQIFKDAIQHQGRGQIL 705
+FQTLRE I Q FTVTG R DEETID LIETG SEQIF+ AIQ QGRGQI
Sbjct: 635 EFQTLRENIHQEYREVVERRVFTVTGTRADEETIDTLIETGDSEQIFQKAIQEQGRGQIT 814
Query: 706 DTVAEIQERHDAVRDLERKLLELQ 777
DT+AEIQERHDAVRDLERKLL+LQ
Sbjct: 815 DTLAEIQERHDAVRDLERKLLDLQ 886
Score = 234 bits (505), Expect(2) = 2e-066
Identities = 118/192 (61%), Positives = 127/192 (66%)
Frame = -3 / -3
Query: 776 CNSRSFLSRSLTASCRSCISATVSSIWPLP*CWIASLNICSLFPXXXXXXXXXXSGRLPV 597
C SRSFLSRSLTAS RS ISA VS IWP P IA ICSL P S +PV
Sbjct: 885 CKSRSFLSRSLTASWRS*ISAKVSVIWPRPCS*IAF*KICSLSPVSINVSIVSSSALVPV 706
Query: 596 TVKTLLSTTSRYSCLIASLKV*KSSIRSFNFFFTAPVVCSLDRSTAEPFPHPGFCLFDRL 417
TVKT LSTTSRYS + SL+V* S+I SFNFFF A VV LDRST P PHPGFCL D+
Sbjct: 705 TVKTRLSTTSRYS*WMFSLRV*NSAILSFNFFFKAIVVEVLDRSTPVPLPHPGFCLLDKF 526
Query: 416 SLSSSSTFVFA*GAIFPTSSISFSIRCLIAFMELAFVTXXDSSFAVWSLFNRFDSFAIIL 237
SLSSSS+F F AIFPTSS SFSIRCLI FM A VT DSS A WS + SF+
Sbjct: 525 SLSSSSSFDFIERAIFPTSSTSFSIRCLIPFMAGALVTAFDSSCASWSFLSNLSSFSFCF 346
Query: 236 SIASTFFKKSFK 201
SI+ TF KK K
Sbjct: 345 SIS*TFLKKLSK 310
Score = 139 bits (298), Expect = 3e-032
Identities = 73/179 (40%), Positives = 101/179 (56%)
Frame = -2 / -2
Query: 738 IMSLLYFSNSV*YLASSLMLDSIFEYLLTFSGLYQVINCLFIRTITSYSKNPSFDNLSIL 559
IM+LL F S+ YLAS L L+ + L T S L Q +N LFI + + + KN +NL +L
Sbjct: 847 IMALLNFCQSICYLASPLFLNCFLKNLFTVSSLNQCVNRLFICSCSRHCKNTPLNNLPVL 668
Query: 558 LPDCFSQGLKIIHPFLQFLFHCXXXXXXXSVHGRTLSTSRFLPIR*VISFQFINFCLCLR 379
L D F + LK H QFLF SV+ + +TSR LPIR*++ +F+ F L
Sbjct: 667 LMDVFPKSLKFSHLVFQFLFQGYSS*GS*SVYTCSFTTSRLLPIR*ILFVKFLEF*LY*T 488
Query: 378 SNFPHFINIFLHPLLNCFHGTCFCNXXGFLICSXELIQ*I*QLCNYTLNCIDLLQEIFQ 202
SNF +FI+IFLH L + FHG + L+C EL + + QL LN ++L +E Q
Sbjct: 487 SNFSNFIDIFLHSLFDSFHGRSLGHSL*LLMCILELFEQLVQLLILFLNLLNLFKETLQ 311
Score = 95.0 bits (201), Expect(2) = 1e-026
Identities = 62/148 (41%), Positives = 83/148 (56%)
Frame = +2 / +3
Query: 335 SSGWRKILMKWGKLLLRQRQKLMNWKEITYRIGKNLDVERVLPWTDQESKLLEQ*KRN*R 514
+S WRK+ MK KLL++ Q N + Y IG++ DV + TDQE +LL *KRN*+
Sbjct: 444 NSEWRKMSMKLEKLLVQ*SQNSRNLTKRIYLIGRSRDVVKEQV*TDQEPQLL*P*KRN*K 623
Query: 515 NGWMIFRP*EKQSGKSIERLSKEGFLL*LVIVLMKRQLMT**RPEKVSKYSKMLSNIREE 694
W+ FR K S KS RL + FL * MKR+L * R E V+K+ + + E
Sbjct: 624 TRWLNFRLLGKTSIKSTGRLLRGVFLQ*REQEQMKRRLTH*LRLETVNKFFRKQFRNKGE 803
Query: 695 ARY*TLLLKYRSDMML*GI*RGSFWSCN 778
AR L K++S MM I RG+FW+ N
Sbjct: 804 AR*QILWQKFKSAMMQSEIWRGNFWTYN 887
Score = 49.2 bits (101), Expect(2) = 1e-026
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1 / +2
Query: 94 AAMNNLLTDSFELPRRDSSRDADIEMGMHQAD 189
+ MN+LL++SFE+PR SR DIEMGM+ AD
Sbjct: 209 STMNDLLSESFEIPRGQGSRGGDIEMGMNSAD 304
Score = 39.6 bits (80), Expect(2) = 2e-066
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = -2 / -2
Query: 180 MHSHFNICVS*GVPPRELKGIREEVVH 100
+HSH NI S + PR+LKG+R++V+H
Sbjct: 295 IHSHLNIPASGTLTPRDLKGLRQKVIH 215
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 219 bits (473), Expect = 3e-056
Identities = 93/116 (80%), Positives = 103/116 (88%)
Frame = +1 / -1
Query: 589 FTVTGNRPDEETIDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLL 768
FTVTG R DEETID LIETG SEQIF+ AIQ QGRGQI DT+AEIQERHDAVRDLERKLL
Sbjct: 454 FTVTGTRADEETIDALIETGDSEQIFQKAIQEQGRGQITDTLAEIQERHDAVRDLERKLL 275
Query: 769 ELQQIFMDMAVLVEAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQRNSRKWMC 936
+LQQIF+DMAVLV+AQGDM++NIE+ VSNA +H+Q G ALQ AKKLQRNSRKWMC
Sbjct: 274 DLQQIFLDMAVLVDAQGDMLDNIESQVSNAVDHVQSGNVALQKAKKLQRNSRKWMC 107
Score = 160 bits (345), Expect = 1e-038
Identities = 77/122 (63%), Positives = 82/122 (67%)
Frame = -3 / +3
Query: 926 FLEFLCSFFAFWSALTPCCMWLVAFETWVSMLLIMSPCASTRTAMSMNICCNSRSFLSRS 747
FLEFLC+FFAFW A P C AFET SML MSPCAST+TA+S ICC SRSFLS+S
Sbjct: 117 FLEFLCNFFAFWRATFPDCT*STAFETCDSMLSSMSPCASTKTAISRKICCKSRSFLSKS 296
Query: 746 LTASCRSCISATVSSIWPLP*CWIASLNICSLFPXXXXXXXXXXSGRLPVTVKTLLSTTS 567
LTAS RS ISA VS IWP P IA ICSL P S +PVTVKT LSTTS
Sbjct: 297 LTASWRS*ISAKVSVIWPRPCS*IAF*KICSLSPVSINASIVSSSALVPVTVKTRLSTTS 476
Query: 566 RY 561
RY
Sbjct: 477 RY 482
>gb|BU891968.1|BU891968 P057F09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 610
Score = 219 bits (472), Expect = 3e-056
Identities = 94/137 (68%), Positives = 105/137 (76%)
Frame = +1 / +2
Query: 589 FTVTGNRPDEETIDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLL 768
FTVTG R DEETID LIETG SEQIF+ AIQ QGRGQI DT+AEIQERHDAVRDLERKLL
Sbjct: 14 FTVTGTRADEETIDTLIETGDSEQIFQKAIQEQGRGQITDTLAEIQERHDAVRDLERKLL 193
Query: 769 ELQQIFMDMAVLVEAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQRNSRKWMCYXXX 948
+LQQIF+DMAVLV+AQGDM++NIE+ VSNA +H+Q G AL AKKLQRNSRKWMC
Sbjct: 194 DLQQIFLDMAVLVDAQGDMLDNIESQVSNAVDHVQSGNVALTKAKKLQRNSRKWMCIAII 373
Query: 949 XXXXXXXXXXXXXXQPW 999
+PW
Sbjct: 374 ILLIIVAIIVVTVLKPW 424
Score = 143 bits (307), Expect = 2e-033
Identities = 72/117 (61%), Positives = 76/117 (64%)
Frame = -3 / -2
Query: 926 FLEFLCSFFAFWSALTPCCMWLVAFETWVSMLLIMSPCASTRTAMSMNICCNSRSFLSRS 747
FLEFLC+FFAF A P C AFET SML MSPCAST+TA+S ICC SRSFLSRS
Sbjct: 351 FLEFLCNFFAFVRATFPDCT*STAFETCDSMLSSMSPCASTKTAISRKICCKSRSFLSRS 172
Query: 746 LTASCRSCISATVSSIWPLP*CWIASLNICSLFPXXXXXXXXXXSGRLPVTVKTLLS 576
LTAS RS ISA VS IWP P IA ICSL P S +PVTVKT LS
Sbjct: 171 LTASWRS*ISAKVSVIWPRPCS*IAF*KICSLSPVSINVSIVSSSALVPVTVKTRLS 1
>gb|CV278214.1|CV278214 WS0145.B21_M14 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0145_M14 3', mRNA sequence
Length = 524
Score = 210 bits (453), Expect = 1e-053
Identities = 90/130 (69%), Positives = 101/130 (77%)
Frame = +1 / -1
Query: 613 DEETIDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMD 792
DEETID LIETG SEQIF+ AIQ QGRGQI DT+AEIQERHDAVRDLERKLL+LQQIF+D
Sbjct: 521 DEETIDTLIETGDSEQIFQKAIQEQGRGQITDTLAEIQERHDAVRDLERKLLDLQQIFLD 342
Query: 793 MAVLVEAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQRNSRKWMCYXXXXXXXXXXX 972
MAVLV+AQGDM++NIE+ VSNA +H+Q G ALQ AKKLQRNSRKWMC
Sbjct: 341 MAVLVDAQGDMLDNIESQVSNAVDHVQSGNVALQKAKKLQRNSRKWMCIAIIILLIIVAI 162
Query: 973 XXXXXXQPWK 1002
+PWK
Sbjct: 161 IVVTVLKPWK 132
Score = 138 bits (297), Expect = 5e-032
Identities = 65/94 (69%), Positives = 68/94 (72%)
Frame = -3 / +1
Query: 926 FLEFLCSFFAFWSALTPCCMWLVAFETWVSMLLIMSPCASTRTAMSMNICCNSRSFLSRS 747
FLEFLC+FFAFWSA P C AFET SML MSPCAST+TA+S ICC SRSFLSRS
Sbjct: 208 FLEFLCNFFAFWSATFPDCT*STAFETCDSMLSSMSPCASTKTAISRKICCKSRSFLSRS 387
Query: 746 LTASCRSCISATVSSIWPLP*CWIASLNICSLFP 645
LTAS RS ISA VS IWP P IA ICSL P
Sbjct: 388 LTASWRS*ISAKVSVIWPRPCS*IAF*KICSLSP 489
>gb|CN520599.1|CN520599 GQ0106.B3_F22 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_F22 5', mRNA sequence
Length = 778
Score = 203 bits (437), Expect = 2e-051
Identities = 94/166 (56%), Positives = 111/166 (66%)
Frame = +1 / +3
Query: 166 EMGMHQADASDNLKDFLKKVDAIESIIAKLSNLLNKLXTANEESXXVTKASSMKAIKQRM 345
++ M A L+ F KKV IE KL LL KL A+EES VTKA +MK IKQRM
Sbjct: 267 DIEMGMNSADLGLESFFKKVQEIEKQNEKLDKLLKKLQDAHEESKAVTKAPAMKGIKQRM 446
Query: 346 EKDIDEVGKIAPQAKTKVDELERDNLSNRQKPGCGKGSAVDRSREQTTGAVKKKLKERMD 525
EKD+DEVGKIA K+K++EL+++NLSNRQKPGCGKG+ VDRSR TT A+KKKLK++M
Sbjct: 447 EKDVDEVGKIARSIKSKLEELDKENLSNRQKPGCGKGTGVDRSRTSTTIALKKKLKDKMA 626
Query: 526 DFQTLREAIRQXXXXXXXXXXFTVTGNRPDEETIDDLIETGKSEQI 663
+FQTLRE I Q FTVTG R ET D L G SEQI
Sbjct: 627 EFQTLRENIHQEYREVVERRVFTVTGTRAXXETXDTLXXXGXSEQI 764
Score = 188 bits (404), Expect(2) = 1e-052
Identities = 96/159 (60%), Positives = 105/159 (66%)
Frame = -3 / -1
Query: 677 IASLNICSLFPXXXXXXXXXXSGRLPVTVKTLLSTTSRYSCLIASLKV*KSSIRSFNFFF 498
I ICSL P +PVTVKT LSTTSRYS + SL+V* S+I SFNFFF
Sbjct: 778 IXXXKICSLXPXXINVSXVSXXALVPVTVKTRLSTTSRYS*WMFSLRV*NSAILSFNFFF 599
Query: 497 TAPVVCSLDRSTAEPFPHPGFCLFDRLSLSSSSTFVFA*GAIFPTSSISFSIRCLIAFME 318
A VV LDRST P PHPGFCL D+ SLSSSS+F F AIFPTSS SFSIRCLI FM
Sbjct: 598 KAIVVEVLDRSTPVPLPHPGFCLLDKFSLSSSSSFDFIERAIFPTSSTSFSIRCLIPFMA 419
Query: 317 LAFVTXXDSSFAVWSLFNRFDSFAIILSIASTFFKKSFK 201
A VT DSS A WS + SF+ SI+ TF KK K
Sbjct: 418 GALVTAFDSSCASWSFLSNLSSFSFCFSIS*TFLKKLSK 302
Score = 104 bits (222), Expect = 1e-021
Identities = 56/153 (36%), Positives = 80/153 (52%)
Frame = -2 / -3
Query: 660 LLTFSGLYQVINCLFIRTITSYSKNPSFDNLSILLPDCFSQGLKIIHPFLQFLFHCXXXX 481
L T Q + L + + + KN +NL +LL D F + LK H QFLF
Sbjct: 761 LFTXXXXXQCVXXLXXCSCSRHCKNTPLNNLPVLLMDVFPKSLKFSHLVFQFLFQGYSS* 582
Query: 480 XXXSVHGRTLSTSRFLPIR*VISFQFINFCLCLRSNFPHFINIFLHPLLNCFHGTCFCNX 301
SV+ + +TSR LPIR*++ +F+ F L SNF +FI+IFLH L + FHG +
Sbjct: 581 GS*SVYTCSFTTSRLLPIR*ILFVKFLEF*LY*TSNFSNFIDIFLHSLFDSFHGRSLGHS 402
Query: 300 XGFLICSXELIQ*I*QLCNYTLNCIDLLQEIFQ 202
L+C EL + + QL LN ++L +E Q
Sbjct: 401 L*LLMCILELFEQLVQLLILFLNLLNLFKETLQ 303
Score = 49.2 bits (101), Expect(3) = 8e-021
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1 / +3
Query: 94 AAMNNLLTDSFELPRRDSSRDADIEMGMHQAD 189
+ MN+LL++SFE+PR SR DIEMGM+ AD
Sbjct: 201 STMNDLLSESFEIPRGQGSRGGDIEMGMNSAD 296
Score = 46.9 bits (96), Expect(3) = 8e-021
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +3 / +2
Query: 468 PIKRANYWSSEKEIEGTDG*FSDLERSNQARVSRGCRKKGFY 593
PIK NY+S EKEIE DG* SD + +RV GC + FY
Sbjct: 569 PIKNLNYYSLEKEIERQDG*ISDS*GKHPSRVPGGC*EACFY 694
Score = 42.3 bits (86), Expect(3) = 8e-021
Identities = 30/87 (34%), Positives = 40/87 (45%)
Frame = +3 / +2
Query: 189 CFRQLERFLEEGRCN*EYNCKAVKSIE*APXCK*GIXXSYKSKFHESN*AADGERY**SG 368
C L FL +G +*E +A + + AP C *G+ + HE N A+GER *S
Sbjct: 290 CRLGLGEFL*KGSRD*ETE*EAGQVAQKAPGCT*GVKGCDQGSCHERNQTANGERCR*SW 469
Query: 369 ENCXXXXXXXXXXXXR*PIE*AKTWMW 449
+NC R I *A+ MW
Sbjct: 470 KNCSFNKVKTRGT*QREFI**AEAGMW 550
Score = 39.6 bits (80), Expect(2) = 1e-052
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = -2 / -3
Query: 180 MHSHFNICVS*GVPPRELKGIREEVVH 100
+HSH NI S + PR+LKG+R++V+H
Sbjct: 287 IHSHLNIPASGTLTPRDLKGLRQKVIH 207
>gb|CA825793.1|CA825793 R67F02 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 627
Score = 88.1 bits (186), Expect(3) = 2e-042
Identities = 41/112 (36%), Positives = 63/112 (56%)
Frame = +1 / +2
Query: 331 IKQRMEKDIDEVGKIAPQAKTKVDELERDNLSNRQKPGCGKGSAVDRSREQTTGAVKKKL 510
++ ++ DI + K A KT+++E++R N +NR+ G +G+ + R+R T ++KKL
Sbjct: 11 VRNKINADIVKGLKKARSIKTQLEEMDRANAANRRLSGYKEGTPIYRTRVAVTNCLRKKL 190
Query: 511 KERMDDFQTLREAIRQXXXXXXXXXXFTVTGNRPDEETIDDLIETGKSEQIF 666
KE M DFQ LR+ + FTVTG PDEE ID +I G + F
Sbjct: 191 KELMMDFQALRQKMMIEYKDTVGRRYFTVTGEYPDEEVIDKIISDGNGGEEF 346
Score = 80.3 bits (169), Expect(3) = 2e-042
Identities = 30/53 (56%), Positives = 44/53 (83%)
Frame = +1 / +2
Query: 655 EQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLVEA 813
E+ K AIQ G+G++L+TV EIQ+R+DA +++E+ LLEL Q+F+DMAV+VEA
Sbjct: 338 EEFLKRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVEA 496
Score = 62.0 bits (129), Expect(3) = 7e-022
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = -3 / -1
Query: 815 CASTRTAMSMNICCNSRSFLSRSLTASCRSCISATVSSIWPLP*CWIA 672
CAST TAMS N C+S S SL AS SCIS TVS+ +P P WIA
Sbjct: 498 CASTITAMSKNTWCSSNKLFSISLAASYLSCISTTVSNTFPFPCSWIA 355
Score = 54.7 bits (113), Expect(3) = 7e-022
Identities = 39/99 (39%), Positives = 46/99 (46%)
Frame = -3 / -1
Query: 647 PXXXXXXXXXXSGRLPVTVKTLLSTTSRYSCLIASLKV*KSSIRSFNFFFTAPVVCSLDR 468
P SG PVTVK LL T S YS +I LK *KS I SFNF V +L
Sbjct: 327 PSEMILSMTSSSGYSPVTVKYLLPTVSLYSIIIFCLKA*KSIISSFNFLRKQLVTATLVL 148
Query: 467 STAEPFPHPGFCLFDRLSLSSSSTFVFA*GAIFPTSSIS 351
P +P L L+ S SS++V A F +IS
Sbjct: 147 *IGVPSLYPERRLLAALARSISSSWVLILLAFFRPLTIS 31
Score = 43.7 bits (89), Expect(3) = 2e-042
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1 / +3
Query: 817 GDMINNIETHVSNATNHIQQGVSALQNAKKLQRNSRKWMC 936
G+ +++ E HV NA ++++ G L++A+ Q +SR WMC
Sbjct: 501 GEQMDDXEHHV*NAXHYVKDGTKELKSARDHQXSSRXWMC 620
Score = 25.4 bits (49), Expect(3) = 7e-022
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2 / -2
Query: 933 HPLPRIPLQFLRVLERAHTLLYVVGGVRDMGLDVV 829
HP P L LE T+L++V + M L ++
Sbjct: 617 HPXPAAXLVISSTLELFGTILHIVXSILHMVLXII 513
>gb|DT487402.1|DT487402 WS02533.B21_J15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_J15 3', mRNA sequence
Length = 953
Score = 142 bits (304), Expect(2) = 2e-040
Identities = 59/90 (65%), Positives = 72/90 (80%)
Frame = +1 / -2
Query: 589 FTVTGNRPDEETIDDLIETGKSEQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLL 768
FTVTG PDE+T+D LI TG+SE + AIQ QGRG+ILDT+ EIQERHDAV+DLE L
Sbjct: 907 FTVTGENPDEKTLDLLISTGESETFLQKAIQQQGRGRILDTINEIQERHDAVKDLENNLK 728
Query: 769 ELQQIFMDMAVLVEAQGDMINNIETHVSNA 858
EL Q+FMDMAVLVE QG+ +++IE+HV A
Sbjct: 727 ELHQVFMDMAVLVEHQGEQLDDIESHVQRA 638
Score = 45.1 bits (92), Expect(2) = 2e-040
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1 / -1
Query: 850 SNATNHIQQGVSALQNAKKLQRNSRKWMCY 939
+ + ++++ G LQ A+KLQRNSRKW CY
Sbjct: 647 AKSNSYVRGGTQQLQTARKLQRNSRKWTCY 558
>gb|BU868155.1|BU868155 M112A11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 534
Score = 139 bits (298), Expect = 3e-032
Identities = 62/104 (59%), Positives = 74/104 (71%)
Frame = +1 / +3
Query: 166 EMGMHQADASDNLKDFLKKVDAIESIIAKLSNLLNKLXTANEESXXVTKASSMKAIKQRM 345
++ M A L+ F KKV IE KL LL KL A+EES VTKA +MK IKQRM
Sbjct: 222 DIEMGMNSADLGLESFFKKVQEIEKQNEKLDKLLKKLQDAHEESKAVTKAPAMKGIKQRM 401
Query: 346 EKDIDEVGKIAPQAKTKVDELERDNLSNRQKPGCGKGSAVDRSR 477
EKD+DEVGKIA K+K++EL++ NLSNRQKPGCGKG+ VDRSR
Sbjct: 402 EKDVDEVGKIARSIKSKLEELDKQNLSNRQKPGCGKGTGVDRSR 533
Score = 122 bits (262), Expect(2) = 4e-033
Identities = 56/92 (60%), Positives = 61/92 (66%)
Frame = -3 / -3
Query: 476 LDRSTAEPFPHPGFCLFDRLSLSSSSTFVFA*GAIFPTSSISFSIRCLIAFMELAFVTXX 297
LDRST P PHPGFCL D+ LSSSS+F F AIFPTSS SFSIRCLI FM A VT
Sbjct: 532 LDRSTPVPLPHPGFCLLDKFCLSSSSSFDFIERAIFPTSSTSFSIRCLIPFMAGALVTAF 353
Query: 296 DSSFAVWSLFNRFDSFAIILSIASTFFKKSFK 201
DSS A WS + SF+ SI+ TF KK K
Sbjct: 352 DSSCASWSFLSNLSSFSFCFSIS*TFLKKLSK 257
Score = 39.6 bits (80), Expect(2) = 4e-033
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = -2 / -2
Query: 180 MHSHFNICVS*GVPPRELKGIREEVVH 100
+HSH NI S + PR+LKG+R++V+H
Sbjct: 242 IHSHLNIPASGTLTPRDLKGLRQKVIH 162
>gb|BU874173.1|BU874173 Q065B02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 652
Score = 126 bits (269), Expect(2) = 1e-030
Identities = 56/96 (58%), Positives = 68/96 (70%)
Frame = +1 / +2
Query: 166 EMGMHQADASDNLKDFLKKVDAIESIIAKLSNLLNKLXTANEESXXVTKASSMKAIKQRM 345
++ M A L+ F KKV IE KL LL KL A+EES VTKA +MK IKQRM
Sbjct: 365 DIEMGMNSADLGLESFFKKVQEIEKQNEKLDKLLKKLQDAHEESKAVTKAPAMKGIKQRM 544
Query: 346 EKDIDEVGKIAPQAKTKVDELERDNLSNRQKPGCGK 453
EKD+DEVGKIA K+K++EL+++NLSNRQKPGCGK
Sbjct: 545 EKDVDEVGKIARSIKSKLEELDKENLSNRQKPGCGK 652
Score = 112 bits (239), Expect(2) = 4e-030
Identities = 51/83 (61%), Positives = 56/83 (67%)
Frame = -3 / -2
Query: 449 PHPGFCLFDRLSLSSSSTFVFA*GAIFPTSSISFSIRCLIAFMELAFVTXXDSSFAVWSL 270
PHPGFCL D+ SLSSSS+F F AIFPTSS SFSIRCLI FM A VT DSS A WS
Sbjct: 648 PHPGFCLLDKFSLSSSSSFDFIERAIFPTSSTSFSIRCLIPFMAGALVTAFDSSCASWSF 469
Query: 269 FNRFDSFAIILSIASTFFKKSFK 201
+ SF+ SI+ TF KK K
Sbjct: 468 LSNLSSFSFCFSIS*TFLKKLSK 400
Score = 40.0 bits (81), Expect(2) = 4e-030
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -2 / -1
Query: 180 MHSHFNICVS*GVPPRELKGIREEVVH 100
+HSH NI S + PR+LKG+R++VVH
Sbjct: 385 IHSHLNIPASGTLTPRDLKGLRQKVVH 305
Score = 27.6 bits (54), Expect(2) = 1e-030
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3 / +1
Query: 96 RHEQPPHGFL*APSAGLLKRRRY*NGN 176
++E+P G L* PS +RR Y*+GN
Sbjct: 301 KNERPFVGVL*DPSGSGFQRRGY*DGN 381
>gb|BI784491.1|BI784491 UNIAB04P70X Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 457
Score = 132 bits (282), Expect = 6e-030
Identities = 49/94 (52%), Positives = 74/94 (78%)
Frame = +1 / +3
Query: 655 EQIFKDAIQHQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLVEAQGDMINN 834
E+ K AIQ G+G++L+TV EIQ+RHDA +++E+ LLEL Q+F+DMAV+VEAQG+ +++
Sbjct: 42 EEFLKRAIQEHGKGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEQMDD 221
Query: 835 IETHVSNATNHIQQGVSALQNAKKLQRNSRKWMC 936
IE HV A+++++ G L+ AK Q++SRKWMC
Sbjct: 222 IEHHVLKASHYVKDGTKELKGAKDHQKSSRKWMC 323
>gb|CK093245.1|CK093245 G113P10.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G113P10 3', mRNA sequence
Length = 531
Score = 120 bits (256), Expect = 2e-026
Identities = 43/83 (51%), Positives = 67/83 (80%)
Frame = +1 / -3
Query: 688 GRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLVEAQGDMINNIETHVSNATNH 867
G+G++L+TV EIQ+RHDA +++E+ LLEL Q+F+DMAV+VEAQG+ +++IE HV A+++
Sbjct: 529 GKGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEQMDDIEPHVLKASHY 350
Query: 868 IQQGVSALQNAKKLQRNSRKWMC 936
++ G L+ K Q++SRKWMC
Sbjct: 349 VKDGTKELKGVKDPQKSSRKWMC 281
>gb|CK098265.1|CK098265 A009P80.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A009P80 5', mRNA sequence
Length = 463
Score = 104 bits (221), Expect = 1e-021
Identities = 38/72 (52%), Positives = 58/72 (80%)
Frame = +1 / +3
Query: 721 IQERHDAVRDLERKLLELQQIFMDMAVLVEAQGDMINNIETHVSNATNHIQQGVSALQNA 900
IQ+RHDA +++E+ LLEL Q+F+DMAV+VEAQG+ +++IE HV A+++++ G L+ A
Sbjct: 114 IQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEQMDDIEHHVLKASHYVKDGTKELKGA 293
Query: 901 KKLQRNSRKWMC 936
K Q++SRKWMC
Sbjct: 294 KDHQKSSRKWMC 329
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 536,776,568
Number of Sequences: 369679
Number of extensions: 7754913
Number of successful extensions: 76536
Number of sequences better than 1.0e-020: 18
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 16487786142
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)