TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762970.2.1
(578 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV236845.1|CV236845 WS01225.B21.1_L03 PT-GT-FL-A-3 Popul... 184 4e-080
gb|CV255036.1|CV255036 WS02411.B21_O03 PTxD-ICC-N-A-14 Popu... 104 2e-056
gb|CN549624.1|CN549624 GQ0242.B3_P14 GQ024 Populus trichoca... 97 6e-055
gb|DT518880.1|DT518880 WS02439.B21_J08 PTxD-ICC-N-A-14 Popu... 105 1e-053
gb|CA928786.1|CA928786 MTU6TR.P6.G11 Aspen root cDNA Librar... 197 1e-049
gb|CV236462.1|CV236462 WS01224.B21.1_D07 PT-GT-FL-A-3 Popul... 97 6e-049
gb|DT518381.1|DT518381 WS02436.B21_P19 PTxD-ICC-N-A-14 Popu... 97 1e-044
gb|CA930378.1|CA930378 MTU4CA.P21.H03 Aspen apex cDNA Libra... 177 1e-044
gb|BU891577.1|BU891577 P052D05 Populus petioles cDNA librar... 102 4e-044
gb|CA928193.1|CA928193 MTU6TR.P17.G08 Aspen root cDNA Libra... 118 8e-044
gb|DT519131.1|DT519131 WS02440.B21_G05 PTxD-ICC-N-A-14 Popu... 88 1e-039
gb|CF236032.1|CF236032 PtaJXT0029G8G0814 Poplar cDNA librar... 97 8e-031
gb|CX654334.1|CX654334 PO02018G07 Poplar SC cDNA library Po... 118 1e-028
gb|CX658030.1|CX658030 PO01008D12 Poplar SC cDNA library Po... 100 2e-028
gb|CK093650.1|CK093650 G127P23.3pR Populus tension wood cDN... 97 8e-027
gb|CV270069.1|CV270069 WS0151.B21_A03 PTxN-IB-A-6 Populus t... 99 1e-024
gb|CX659757.1|CX659757 PO01013F12 Poplar SC cDNA library Po... 106 2e-024
gb|DN491298.1|DN491298 UM84TA05.3pR Populus female catkins ... 96 4e-024
gb|CV254903.1|CV254903 WS02411.B21_I11 PTxD-ICC-N-A-14 Popu... 102 3e-021
>gb|CV236845.1|CV236845 WS01225.B21.1_L03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_L03 3', mRNA sequence
Length = 893
Score = 184 bits (399), Expect(3) = 4e-080
Identities = 79/104 (75%), Positives = 85/104 (81%)
Frame = +2 / -3
Query: 20 DAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLL 199
DAV RILRVKFTMGLFENP D+SL ELG QEHRELAREAVRKSLVLLKNG+S+ PLL
Sbjct: 891 DAVTRILRVKFTMGLFENPLADNSLVNELGSQEHRELAREAVRKSLVLLKNGESAAEPLL 712
Query: 200 PLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTIL 331
PLPKKA KILVAGSHA++LG QCGGWTI WQG GN T +
Sbjct: 711 PLPKKATKILVAGSHADNLGYQCGGWTIEWQGLGGNNLTSGTTI 580
Score = 127 bits (273), Expect(2) = 3e-046
Identities = 60/91 (65%), Positives = 64/91 (70%)
Frame = -3 / +2
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A LPAT I AF GRGSNG+ D PFF T DFLTAS A+S CS
Sbjct: 620 CHSIVHPPH**PRLSA*LPATSIFVAFLGRGSNGSAADSPFFSSTSDFLTASLANSLCSW 799
Query: 111 FPSSPARLESG*GFSNRPMVNLTRRIL*TAS 19
PSS RL S GFS RP+VNLTR+IL TAS
Sbjct: 800 LPSSLTRLLSARGFSKRPIVNLTRKILVTAS 892
Score = 102 bits (219), Expect(3) = 4e-080
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2 / -3
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++ + YAIVVVGEPPYAETFGD+LNLTI PGPS Q+VCG KCV V+ISGR +V++
Sbjct: 507 VKSNNFSYAIVVVGEPPYAETFGDSLNLTISEPGPSTIQNVCGTVKCVTVIISGRPVVIQ 328
Score = 79.0 bits (167), Expect(2) = 3e-046
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = -3 / +2
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA*SYL 409
T+ PEM T TH P T LGPG+ IV+F+LSPNVSAYGGSPTTT+A* L
Sbjct: 335 TTGRPEMMTVTHFTVPQTF*IVLGPGSDIVKFKLSPNVSAYGGSPTTTMA*EKL 496
Score = 51.6 bits (107), Expect(3) = 4e-080
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2 / -3
Query: 305 NTTAGTTILSGIEATVDPSTQVVYSESPDS 394
N T+GTTIL+ I+ TVDPST+VVY E+PD+
Sbjct: 603 NLTSGTTILTAIKNTVDPSTEVVYKENPDA 514
>gb|CV255036.1|CV255036 WS02411.B21_O03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_O03 3', mRNA sequence
Length = 778
Score = 104 bits (223), Expect(3) = 2e-056
Identities = 43/61 (70%), Positives = 48/61 (78%)
Frame = +2 / -1
Query: 149 KSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTI 328
KSLVLLKNG+S+ PLLPLPKKA KILVAGSHA++LG QCGGWTI WQG GN T
Sbjct: 775 KSLVLLKNGESAAEPLLPLPKKATKILVAGSHADNLGYQCGGWTIEWQGLGGNNLTSGTT 596
Query: 329 L 331
+
Sbjct: 595 I 593
Score = 102 bits (219), Expect(3) = 2e-056
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2 / -1
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++ + YAIVVVGEPPYAETFGD+LNLTI PGPS Q+VCG KCV V+ISGR +V++
Sbjct: 520 VKSNNFSYAIVVVGEPPYAETFGDSLNLTISEPGPSTIQNVCGTVKCVTVIISGRPVVIQ 341
Score = 79.0 bits (167), Expect(2) = 1e-029
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = -3 / +3
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA*SYL 409
T+ PEM T TH P T LGPG+ IV+F+LSPNVSAYGGSPTTT+A* L
Sbjct: 348 TTGRPEMMTVTHFTVPQTF*IVLGPGSDIVKFKLSPNVSAYGGSPTTTMA*EKL 509
Score = 71.3 bits (150), Expect(2) = 1e-029
Identities = 31/48 (64%), Positives = 32/48 (66%)
Frame = -3 / +3
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDF 148
CH IVHPPH PR A LPAT I AF GRGSNG+ D PFF T DF
Sbjct: 633 CHSIVHPPH**PRLSA*LPATSIFVAFLGRGSNGSAADSPFFSSTSDF 776
Score = 51.6 bits (107), Expect(3) = 2e-056
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2 / -1
Query: 305 NTTAGTTILSGIEATVDPSTQVVYSESPDS 394
N T+GTTIL+ I+ TVDPST+VVY E+PD+
Sbjct: 616 NLTSGTTILTAIKNTVDPSTEVVYKENPDA 527
>gb|CN549624.1|CN549624 GQ0242.B3_P14 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_P14 5', mRNA sequence
Length = 707
Score = 97.2 bits (207), Expect(3) = 6e-055
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +2 / +3
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++K+ YAIVVVGEPPYAE +GD+ NLTI PGPS +VCG KCVVV+ISGR +V++
Sbjct: 348 VSSNKFSYAIVVVGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQ 527
Score = 85.4 bits (181), Expect(3) = 6e-055
Identities = 33/39 (84%), Positives = 35/39 (89%)
Frame = +2 / +3
Query: 191 PLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGN 307
PLLPLPKKA KILVAGSHA++LG QCGGWTITWQG GN
Sbjct: 135 PLLPLPKKAPKILVAGSHADNLGYQCGGWTITWQGLGGN 251
Score = 79.5 bits (168), Expect(3) = 4e-037
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = -3 / -2
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA*SYL 409
T+ P++ TTTHL PHT LGPG+ IVR LSP +SAYGGSPTTTIA* L
Sbjct: 520 TTGRPDITTTTHLTAPHTLLMVLGPGSDIVRLELSPYISAYGGSPTTTIA*ENL 359
Score = 71.7 bits (151), Expect(3) = 6e-055
Identities = 32/43 (74%), Positives = 34/43 (79%)
Frame = +2 / +3
Query: 62 LFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYA 190
LFE P D S+A LG QEHRELAREAVRKSLVLLKNGK + A
Sbjct: 3 LFEKPLADLSMANHLGSQEHRELAREAVRKSLVLLKNGKYTTA 131
Score = 64.9 bits (136), Expect(3) = 4e-037
Identities = 24/34 (70%), Positives = 25/34 (73%)
Frame = -3 / -2
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNG 190
CHVIV PPHW P+ AWLPAT I AF G GSNG
Sbjct: 235 CHVIVQPPHW*PKLSAWLPATSIFGAFLGSGSNG 134
Score = 49.4 bits (102), Expect(3) = 4e-037
Identities = 24/39 (61%), Positives = 25/39 (64%)
Frame = -3 / -2
Query: 177 LPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNR 61
LPFF RT DFLTAS A+S CS P A L S GFS R
Sbjct: 118 LPFFSRTSDFLTASLANSLCS*LPRWLAMLRSANGFSKR 2
>gb|DT518880.1|DT518880 WS02439.B21_J08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_J08 3', mRNA sequence
Length = 892
Score = 105 bits (225), Expect(4) = 1e-053
Identities = 47/76 (61%), Positives = 55/76 (72%)
Frame = +2 / -2
Query: 104 LGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTI 283
L E R+ AREAVRKSLVLLKNG+++ AP+L L KKA +ILV GSHAN+LG QCGGWT
Sbjct: 840 LTSSEARDSAREAVRKSLVLLKNGENANAPILLLLKKASRILVVGSHANNLGYQCGGWTA 661
Query: 284 TWQGSSGNTTAGTTIL 331
T QG GN T +
Sbjct: 660 T*QGVDGNNYTAGTTI 613
Score = 84.5 bits (179), Expect(4) = 1e-053
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = +2 / -2
Query: 419 YAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
YAIVVVGE PY ET GD+LNLTI PGPS +VCG KCVVV + GR +++E
Sbjct: 519 YAIVVVGETPYVETAGDSLNLTIAEPGPSTILNVCGNVKCVVVTVFGRPIMIE 361
Score = 74.4 bits (157), Expect(2) = 4e-025
Identities = 35/59 (59%), Positives = 36/59 (61%)
Frame = -3 / +2
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCS 115
C V VHPPH P+ LAWLP TRIL AF R GA PFF T DFLTAS A S S
Sbjct: 653 C*VAVHPPH**PKLLAWLPTTRILDAFLRRSRIGAFAFSPFFNNTSDFLTASLAESLAS 829
Score = 61.2 bits (128), Expect(2) = 4e-025
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = -3 / +2
Query: 558 PEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA*SYL 409
P TTTHL P T LGPG+ +VRF+LSP VS G SPTTT+A* L
Sbjct: 380 PNTVTTTHLTLPQTLRIVLGPGSAMVRFKLSPAVST*GVSPTTTMA*HKL 529
Score = 49.8 bits (103), Expect(4) = 1e-053
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +2 / -2
Query: 305 NTTAGTTILSGIEATVDPSTQVVYSES 385
N TAGTTILSGI A VDPST++VYS++
Sbjct: 636 NYTAGTTILSGISAAVDPSTEIVYSKN 556
Score = 27.9 bits (55), Expect(4) = 1e-053
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2 / -1
Query: 44 VKFTMGLFENPYPDSSLAGELGKQ 115
VKFT+GL E P + + +LG Q
Sbjct: 892 VKFTLGLSETPLAEET*VDQLGSQ 821
>gb|CA928786.1|CA928786 MTU6TR.P6.G11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 685
Score = 197 bits (426), Expect = 1e-049
Identities = 84/102 (82%), Positives = 89/102 (87%)
Frame = +2 / -2
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
PMSRIDDAV RILRVKFTMGLFENP D+SL ELG QEHRELAREAVRKSLVLLKNG+S
Sbjct: 318 PMSRIDDAVKRILRVKFTMGLFENPLADNSLVDELGSQEHRELAREAVRKSLVLLKNGES 139
Query: 182 SYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGN 307
+ PLLPLPKKA KILVAGSHA++LG QCGGWTI WQG GN
Sbjct: 138 AAEPLLPLPKKATKILVAGSHADNLGYQCGGWTIEWQGLGGN 13
Score = 142 bits (306), Expect = 1e-033
Identities = 67/97 (69%), Positives = 71/97 (73%)
Frame = -3 / +2
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A LPAT IL AF GRGSNG+ D PFF T DFLTAS A+S CS
Sbjct: 29 CHSIVHPPH**PRLSA*LPATSILVAFLGRGSNGSAADSPFFSSTSDFLTASLANSLCSW 208
Query: 111 FPSSPARLESG*GFSNRPMVNLTRRIL*TASSILLMG 1
PSS RL S GFS RP+VNLTR+IL TASSILLMG
Sbjct: 209 LPSSSTRLLSARGFSKRPIVNLTRKILFTASSILLMG 319
>gb|CV236462.1|CV236462 WS01224.B21.1_D07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_D07 3', mRNA sequence
Length = 915
Score = 96.8 bits (206), Expect(3) = 6e-049
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = +2 / -2
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++K+ YAIVVVGEPPYAE +GD+ NLTI PGPS +VCG KCVV++ISGR +V++
Sbjct: 620 VKSNKFSYAIVVVGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQ 441
Score = 84.0 bits (178), Expect(3) = 6e-049
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = +2 / -2
Query: 179 SSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGN 307
S+ P LPLPKKA KIL+AGSHA++LG QCGGWTITWQG GN
Sbjct: 845 STAKPFLPLPKKAPKILIAGSHADNLGYQCGGWTITWQGLGGN 717
Score = 75.4 bits (159), Expect(3) = 7e-031
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -3 / +1
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
T+ P++ TTHL PHT LGPG+ IVR LSP +SAYGGSPTTTIA
Sbjct: 448 TTGRPDITMTTHLTAPHTLLMVLGPGSDIVRLELSPYISAYGGSPTTTIA 597
Score = 59.9 bits (125), Expect(3) = 7e-031
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = -3 / +1
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNG 190
CHVIV PPHW P+ AWLPA I AF G G NG
Sbjct: 733 CHVIVQPPHW*PKLSAWLPAISIFGAFLGSGRNG 834
Score = 53.0 bits (110), Expect(3) = 6e-049
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = +2 / -2
Query: 113 QEHRELAREAVRKSLVLLKNGKSSYA 190
QEHRELAREAVRKSLVLLKNGK S A
Sbjct: 914 QEHRELAREAVRKSLVLLKNGKYSTA 837
Score = 38.4 bits (78), Expect(3) = 7e-031
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -3 / +1
Query: 177 LPFFRRTRDFLTASRASSRCS 115
LPFF RT DFLTAS A+S CS
Sbjct: 850 LPFFSRTSDFLTASLANSLCS 912
>gb|DT518381.1|DT518381 WS02436.B21_P19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_P19 3', mRNA sequence
Length = 899
Score = 96.8 bits (206), Expect(3) = 1e-044
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = +2 / -2
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++K+ YAIVVVGEPPYAE +GD+ NLTI PGPS +VCG KCVV++ISGR +V++
Sbjct: 622 VKSNKFSYAIVVVGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQ 443
Score = 84.0 bits (178), Expect(3) = 1e-044
Identities = 32/43 (74%), Positives = 36/43 (83%)
Frame = +2 / -2
Query: 179 SSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGN 307
S+ P LPLPKKA KIL+AGSHA++LG QCGGWTITWQG GN
Sbjct: 847 STAKPFLPLPKKAPKILIAGSHADNLGYQCGGWTITWQGLGGN 719
Score = 75.4 bits (159), Expect(3) = 9e-029
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -3 / +3
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
T+ P++ TTHL PHT LGPG+ IVR LSP +SAYGGSPTTTIA
Sbjct: 450 TTGRPDITMTTHLTAPHTLLMVLGPGSDIVRLELSPYISAYGGSPTTTIA 599
Score = 59.9 bits (125), Expect(3) = 9e-029
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = -3 / +3
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNG 190
CHVIV PPHW P+ AWLPA I AF G G NG
Sbjct: 735 CHVIVQPPHW*PKLSAWLPAISIFGAFLGSGRNG 836
Score = 38.4 bits (78), Expect(3) = 1e-044
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2 / -2
Query: 131 AREAVRKSLVLLKNGKSSYA 190
AREAVRKSLVLLKNGK S A
Sbjct: 898 AREAVRKSLVLLKNGKYSTA 839
Score = 31.1 bits (62), Expect(3) = 9e-029
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -3 / +3
Query: 177 LPFFRRTRDFLTASRA 130
LPFF RT DFLTAS A
Sbjct: 852 LPFFSRTSDFLTASLA 899
>gb|CA930378.1|CA930378 MTU4CA.P21.H03 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 683
Score = 177 bits (383), Expect(2) = 1e-044
Identities = 75/92 (81%), Positives = 80/92 (86%)
Frame = +2 / -3
Query: 32 RILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPK 211
RILRVKFTMGLFENP D+SL ELG QEHRELAREAVRKSLVLLKNG+S+ PLLPLPK
Sbjct: 288 RILRVKFTMGLFENPLADNSLVDELGSQEHRELAREAVRKSLVLLKNGESAAEPLLPLPK 109
Query: 212 KAGKILVAGSHANDLGNQCGGWTITWQGSSGN 307
KA KILVAGSHA++LG QCGGWTI WQG GN
Sbjct: 108 KATKILVAGSHADNLGYQCGGWTIEWQGLGGN 13
Score = 125 bits (270), Expect = 1e-028
Identities = 58/87 (66%), Positives = 62/87 (71%)
Frame = -3 / +2
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A LPAT IL AF GRGSNG+ D PFF T DFLTAS A+S CS
Sbjct: 29 CHSIVHPPH**PRLSA*LPATSILVAFLGRGSNGSAADSPFFSSTSDFLTASLANSLCSW 208
Query: 111 FPSSPARLESG*GFSNRPMVNLTRRIL 31
PSS RL S GFS RP+VNLTR+IL
Sbjct: 209 LPSSSTRLLSARGFSKRPIVNLTRKIL 289
Score = 23.4 bits (45), Expect(2) = 1e-044
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2 / -2
Query: 2 PMSRIDDAV 28
PMSRIDDAV
Sbjct: 316 PMSRIDDAV 290
>gb|BU891577.1|BU891577 P052D05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 548
Score = 102 bits (219), Expect(3) = 4e-044
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2 / +3
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++ + YAIVVVGEPPYAETFGD+LNLTI PGPS Q+VCG KCV V+ISGR +V++
Sbjct: 252 VKSNNFSYAIVVVGEPPYAETFGDSLNLTISEPGPSTIQNVCGAVKCVTVIISGRPVVIQ 431
Score = 80.8 bits (171), Expect(3) = 4e-044
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = +2 / +1
Query: 194 LLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTIL 331
LLPLPKKA KILVAGSHA++LG QCGGWTI WQG GN T +
Sbjct: 43 LLPLPKKATKILVAGSHADNLGYQCGGWTIEWQGLGGNNLTSGTTI 180
Score = 79.5 bits (168), Expect(2) = 2e-024
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = -3 / -2
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA*SYL 409
T+ PEM T TH P T LGPG+ IV+F+LSPNVSAYGGSPTTT+A* L
Sbjct: 424 TTGRPEMMTVTHFTAPQTF*IVLGPGSDIVKFKLSPNVSAYGGSPTTTMA*EKL 263
Score = 53.5 bits (111), Expect(2) = 2e-024
Identities = 23/33 (69%), Positives = 23/33 (69%)
Frame = -3 / -1
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSN 193
CH IVHPPH PR A LPAT I AF GRGSN
Sbjct: 140 CHSIVHPPH**PRLSA*LPATSIFVAFLGRGSN 42
Score = 33.9 bits (68), Expect(3) = 4e-044
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2 / +3
Query: 347 TVDPSTQVVYSESPDS 394
TVDPST+VVY E+PD+
Sbjct: 198 TVDPSTEVVYKENPDA 245
>gb|CA928193.1|CA928193 MTU6TR.P17.G08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 423
Score = 118 bits (254), Expect(2) = 8e-044
Identities = 52/61 (85%), Positives = 55/61 (90%)
Frame = +2 / -3
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
PMSRIDDAV RILRVKFTMGLFENP D+SL ELG QEHRELAREAVRKSLVLLKNG+S
Sbjct: 319 PMSRIDDAVKRILRVKFTMGLFENPLADNSLVDELGSQEHRELAREAVRKSLVLLKNGES 140
Query: 182 S 184
+
Sbjct: 139 A 137
Score = 89.0 bits (189), Expect(2) = 9e-028
Identities = 42/60 (70%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 180 DLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL*TASSILLMG 1
D PFF T DFLTAS A+S CS PSS RL S GFS RP+VNLTR+IL TASSILLMG
Sbjct: 141 DSPFFSSTSDFLTASLANSLCSWLPSSSTRLLSARGFSKRPIVNLTRKILFTASSILLMG 320
Score = 79.5 bits (168), Expect(2) = 8e-044
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +2 / -1
Query: 191 PLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGN 307
P +PLPKKA KILVAGSHA++LG QCGGWTI WQG GN
Sbjct: 129 PCIPLPKKATKILVAGSHADNLGYQCGGWTIEWQGLGGN 13
Score = 53.5 bits (111), Expect(2) = 9e-028
Identities = 23/34 (67%), Positives = 24/34 (70%)
Frame = -3 / +2
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNG 190
CH IVHPPH PR A LPAT IL AF GRG +G
Sbjct: 29 CHSIVHPPH**PRLSA*LPATSILVAFLGRGMHG 130
>gb|DT519131.1|DT519131 WS02440.B21_G05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_G05 3', mRNA sequence
Length = 667
Score = 87.7 bits (186), Expect(3) = 1e-039
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = +2 / -1
Query: 404 ADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLV 571
++ + YAIVVVGE PYAET GD+LNLTI PGPS +VCG KCVVV +SGR ++
Sbjct: 466 SNNFSYAIVVVGETPYAETAGDSLNLTIAEPGPSTILNVCGNVKCVVVTVSGRPIM 299
Score = 62.6 bits (131), Expect(3) = 1e-039
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +2 / -1
Query: 209 KKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTIL 331
KKA +ILV GSHAN+LG QCGGWT T QG GN + T +
Sbjct: 667 KKASRILVVGSHANNLGYQCGGWTAT*QGVDGNNYSAGTTI 545
Score = 52.1 bits (108), Expect(3) = 1e-039
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +2 / -1
Query: 305 NTTAGTTILSGIEATVDPSTQVVYSESPDS 394
N +AGTTILSGI A VDPST++VYS++P++
Sbjct: 568 NYSAGTTILSGISAAVDPSTEIVYSKNPNA 479
>gb|CF236032.1|CF236032 PtaJXT0029G8G0814 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 711
Score = 97.2 bits (207), Expect(2) = 8e-031
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +2 / +2
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++K+ YAIVVVGEPPYAE +GD+ NLTI PGPS +VCG KCVVV+ISGR +V++
Sbjct: 173 VSSNKFSYAIVVVGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQ 352
Score = 79.5 bits (168), Expect(2) = 6e-022
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = -3 / -1
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA*SYL 409
T+ P++ TTTHL PHT LGPG+ IVR LSP +SAYGGSPTTTIA* L
Sbjct: 345 TTGRPDITTTTHLTAPHTLLMVLGPGSDIVRLELSPYISAYGGSPTTTIA*ENL 184
Score = 57.1 bits (119), Expect(2) = 8e-031
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2 / +2
Query: 233 AGSHANDLGNQCGGWTITWQGSSGN 307
AGSHA++LG QCGGWTITWQG GN
Sbjct: 2 AGSHADNLGYQCGGWTITWQGLGGN 76
Score = 45.3 bits (93), Expect(2) = 6e-022
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3 / -1
Query: 291 CHVIVHPPHWLPRSLAWLPA 232
CHVIV PPHW P+ AWLPA
Sbjct: 60 CHVIVQPPHW*PKLSAWLPA 1
>gb|CX654334.1|CX654334 PO02018G07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02018G07 5', mRNA sequence
Length = 304
Score = 118 bits (253), Expect(2) = 1e-028
Identities = 52/60 (86%), Positives = 54/60 (90%)
Frame = +2 / +3
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
PMSRIDDAV RILRVKFTMGLFENP D+SL ELG QEHRELAREAVRKSLVLLKNG+S
Sbjct: 84 PMSRIDDAVKRILRVKFTMGLFENPLADNSLVDELGSQEHRELAREAVRKSLVLLKNGES 263
Score = 27.9 bits (55), Expect(2) = 1e-028
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2 / +3
Query: 194 LLPLPKKAGKILV 232
LLPLPKKA KILV
Sbjct: 264 LLPLPKKATKILV 302
>gb|CX658030.1|CX658030 PO01008D12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01008D12 5', mRNA sequence
Length = 653
Score = 100 bits (214), Expect(2) = 2e-028
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +2 / +3
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ ++ + YAIVVVGEPPYAETFGD+LNLTI PGPS Q+VCG KC V+ISGR +V++
Sbjct: 162 IKSNNFSYAIVVVGEPPYAETFGDSLNLTISEPGPSTIQNVCGTVKCATVIISGRPVVIQ 341
Score = 45.7 bits (94), Expect(2) = 2e-028
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 245 ANDLGNQCGGWTITWQGSSGNTTAGTTIL 331
A++LG QCGGWTI WQG GN T +
Sbjct: 3 ADNLGYQCGGWTIEWQGLGGNNLTSGTTI 89
>gb|CK093650.1|CK093650 G127P23.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G127P23 3', mRNA sequence
Length = 836
Score = 97.2 bits (207), Expect(2) = 8e-027
Identities = 38/60 (63%), Positives = 48/60 (80%)
Frame = +2 / -1
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++K+ YAIVVVGEPPYAE +GD+ NLTI PGPS +VCG KCVVV+ISGR +V++
Sbjct: 677 VSSNKFSYAIVVVGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQ 498
Score = 43.4 bits (89), Expect(2) = 8e-027
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2 / -1
Query: 245 ANDLGNQCGGWTITWQGSSGN 307
A++LG QCGGWTITWQG N
Sbjct: 836 ADNLGYQCGGWTITWQGLGEN 774
>gb|CV270069.1|CV270069 WS0151.B21_A03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_A03 3', mRNA sequence
Length = 583
Score = 99 bits (213), Expect(2) = 1e-024
Identities = 39/60 (65%), Positives = 49/60 (81%)
Frame = +2 / -3
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++ + YAIVVVGEPPYAETFGD+L+LTI PGPS Q+VCG KCV V+ISGR +V++
Sbjct: 521 VKSNNFSYAIVVVGEPPYAETFGDSLSLTISEPGPSTIQNVCGTIKCVTVIISGRPVVIQ 342
Score = 33.4 bits (67), Expect(2) = 1e-024
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2 / -3
Query: 347 TVDPSTQVVYSESPDS 394
TVDPST++VY E+PD+
Sbjct: 575 TVDPSTEIVYKENPDA 528
>gb|CX659757.1|CX659757 PO01013F12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013F12 5', mRNA sequence
Length = 314
Score = 106 bits (227), Expect(2) = 2e-024
Identities = 48/63 (76%), Positives = 51/63 (80%)
Frame = +2 / +3
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
PMSRI+DAV RILRVKF MGLFE P D S+A LG EHRELAREAVRKSLVLLKNGK
Sbjct: 87 PMSRINDAVQRILRVKFVMGLFEKPLADLSMAHHLGSHEHRELAREAVRKSLVLLKNGKY 266
Query: 182 SYA 190
+ A
Sbjct: 267 TTA 275
Score = 25.7 bits (50), Expect(2) = 2e-024
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2 / +3
Query: 191 PLLPLPKKAGKI 226
P LPLPKKA KI
Sbjct: 279 PFLPLPKKAPKI 314
>gb|DN491298.1|DN491298 UM84TA05.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM84TA05 3', mRNA sequence
Length = 677
Score = 95.9 bits (204), Expect(2) = 4e-024
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = +2 / -2
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++K+ YAIVV+GEPPYAE +GD+ NLTI PGPS +VCG KCVVV++SGR +V++
Sbjct: 616 VKSNKFSYAIVVIGEPPYAEMYGDSSNLTISEPGPSTINNVCGAVKCVVVVLSGRPVVIQ 437
Score = 35.7 bits (72), Expect(2) = 4e-024
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +2 / -2
Query: 347 TVDPSTQVVYSESPDS 394
TVDP+TQVVY+E+PDS
Sbjct: 670 TVDPTTQVVYNENPDS 623
>gb|CV254903.1|CV254903 WS02411.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_I11 3', mRNA sequence
Length = 551
Score = 102 bits (219), Expect = 3e-021
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2 / -2
Query: 398 VLADKYDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
V ++ + YAIVVVGEPPYAETFGD+LNLTI PGPS Q+VCG KCV V+ISGR +V++
Sbjct: 520 VKSNNFSYAIVVVGEPPYAETFGDSLNLTISEPGPSTIQNVCGTVKCVTVIISGRPVVIQ 341
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.316 0.137 0.438
Matrix: BLOSUM62
Number of Hits to DB: 207,560,109
Number of Sequences: 369679
Number of extensions: 2383712
Number of successful extensions: 39365
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 47
effective length of database: 50,427,975
effective search space used: 7312056375
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)