TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU895666.1|BU895666 X029B05 Populus wood cDNA library Po... 124 5e-028
gb|AJ776405.1|AJ776405 AJ776405 Populus euphratica root 3-6... 124 5e-028
gb|DN502651.1|DN502651 X029B05.5pR Populus wood cDNA librar... 124 5e-028
gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cD... 118 2e-026
gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA li... 118 2e-026
gb|AY675562.1| Populus tomentosa myb family transcription f... 118 2e-026
gb|BI120049.1|BI120049 F009P52Y Populus flower cDNA library... 118 3e-026
gb|BI121546.1|BI121546 F039P55Y Populus flower cDNA library... 118 3e-026
gb|BI138152.1|BI138152 F099P78Y Populus flower cDNA library... 118 3e-026
gb|BI138671.1|BI138671 F113P06Y Populus flower cDNA library... 118 3e-026
gb|BU830630.1|BU830630 T011A03 Populus apical shoot cDNA li... 118 3e-026
gb|BU836794.1|BU836794 T091A03 Populus apical shoot cDNA li... 118 3e-026
gb|CK100919.1|CK100919 F009P52.5pR Populus flower cDNA libr... 118 3e-026
gb|AJ777805.1|AJ777805 AJ777805 Populus euphratica root 3-6... 118 3e-026
gb|AJ778661.1|AJ778661 AJ778661 Populus euphratica cambium ... 118 3e-026
gb|CV130845.1|CV130845 X9SP06c03 Populus stem seasonal libr... 118 3e-026
gb|CV241113.1|CV241113 WS02511.B21_E01 PT-MB-N-A-15 Populus... 118 3e-026
gb|CX169614.1|CX169614 G08_69-53_14.ab1 leaf inoculated wit... 118 3e-026
gb|CX169882.1|CX169882 B11_69-49_03.ab1 leaf inoculated wit... 118 3e-026
gb|CX171926.1|CX171926 E01_69-116_09.ab1 leaf inoculated wi... 118 3e-026
gb|CX659089.1|CX659089 PO01026D05 Poplar SC cDNA library Po... 118 3e-026
gb|DT475295.1|DT475295 WS0126.BR_K17 PT-GT-FL-A-3 Populus t... 118 3e-026
gb|DT477531.1|DT477531 WS02520.BR_D16 PT-MB-N-A-15 Populus ... 118 3e-026
gb|DT506339.1|DT506339 WS0189.C21_F04 PTxD-IL-N-A-9 Populus... 118 3e-026
gb|DV464439.1|DV464439 MTUNUL1.P27.E08 NUL Populus fremonti... 118 3e-026
gb|DV466595.1|DV466595 MTUNUL1.P7.F11 NUL Populus fremontii... 118 3e-026
gb|BU834640.1|BU834640 T063H04 Populus apical shoot cDNA li... 116 1e-025
gb|BP922315.1|BP922315 BP922315 full-length enriched poplar... 115 2e-025
gb|CX657848.1|CX657848 PO01006A04 Poplar SC cDNA library Po... 114 6e-025
gb|CX657851.1|CX657851 PO01006A08 Poplar SC cDNA library Po... 114 6e-025
gb|DT471607.1|DT471607 WS01214.BR_H04 PT-GT-FL-A-3 Populus ... 92 4e-022
gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium... 104 6e-022
gb|BU866913.1|BU866913 S072B11 Populus imbibed seed cDNA li... 102 2e-021
gb|BU872341.1|BU872341 Q041H08 Populus flower cDNA library ... 102 2e-021
gb|BU873815.1|BU873815 Q060C05 Populus flower cDNA library ... 102 2e-021
gb|BU876622.1|BU876622 V023A09 Populus flower cDNA library ... 102 2e-021
gb|BU888654.1|BU888654 P010G03 Populus petioles cDNA librar... 102 2e-021
gb|AJ768036.1|AJ768036 AJ768036 Populus euphratica leaf adu... 102 2e-021
gb|BP922591.1|BP922591 BP922591 full-length enriched poplar... 102 2e-021
gb|BP926960.1|BP926960 BP926960 full-length enriched poplar... 102 2e-021
gb|DV464078.1|DV464078 MTUNUL1.P22.H05 NUL Populus fremonti... 102 2e-021
>gb|BU895666.1|BU895666 X029B05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 699
Score = 124 bits (265), Expect = 5e-028
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = +1 / +1
Query: 370 LLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGI 549
++H LVLSTDAKPRLKWT ELH+RFVEAV+QLGG DKATPK++MR+MGI
Sbjct: 247 IIHQTEMGLQHQSMNLVLSTDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGI 426
Query: 550 PGLTLYHLKSH 582
PGLTLYHLKSH
Sbjct: 427 PGLTLYHLKSH 459
>gb|AJ776405.1|AJ776405 AJ776405 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400012G01F1, mRNA sequence
Length = 544
Score = 124 bits (265), Expect = 5e-028
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = +1 / +1
Query: 370 LLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGI 549
++H LVLSTDAKPRLKWT ELH+RFVEAV+QLGG DKATPK++MR+MGI
Sbjct: 286 IIHQTEMGLQHQSMNLVLSTDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGI 465
Query: 550 PGLTLYHLKSH 582
PGLTLYHLKSH
Sbjct: 466 PGLTLYHLKSH 498
>gb|DN502651.1|DN502651 X029B05.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X029B05 5', mRNA sequence
Length = 761
Score = 124 bits (265), Expect = 5e-028
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = +1 / +2
Query: 370 LLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGI 549
++H LVLSTDAKPRLKWT ELH+RFVEAV+QLGG DKATPK++MR+MGI
Sbjct: 245 IIHQTEMGLQHQSMNLVLSTDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGI 424
Query: 550 PGLTLYHLKSH 582
PGLTLYHLKSH
Sbjct: 425 PGLTLYHLKSH 457
>gb|BU824003.1|BU824003 UB59CPB06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 427
Score = 118 bits (253), Expect = 2e-026
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 70 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 237
>gb|BU867394.1|BU867394 S077F10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 719
Score = 118 bits (253), Expect = 2e-026
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 202 LVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 369
>gb|AY675562.1| Populus tomentosa myb family transcription factor-related protein
mRNA, complete cds
Length = 1104
Score = 118 bits (253), Expect = 2e-026
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 73 LVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 240
>gb|BI120049.1|BI120049 F009P52Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 262
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 80 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 247
>gb|BI121546.1|BI121546 F039P55Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 259
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 80 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 247
>gb|BI138152.1|BI138152 F099P78Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 304
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 85 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 252
>gb|BI138671.1|BI138671 F113P06Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 373
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 206 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 373
>gb|BU830630.1|BU830630 T011A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 613
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 234 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 401
>gb|BU836794.1|BU836794 T091A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 607
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 234 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 401
>gb|CK100919.1|CK100919 F009P52.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F009P52 5', mRNA sequence
Length = 538
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 80 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 247
>gb|AJ777805.1|AJ777805 AJ777805 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035D01F1, mRNA sequence
Length = 689
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 75 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 242
>gb|AJ778661.1|AJ778661 AJ778661 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600004C06F1, mRNA sequence
Length = 748
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 14 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 181
>gb|CV130845.1|CV130845 X9SP06c03 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 878
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 148 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 315
>gb|CV241113.1|CV241113 WS02511.B21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_E01 3', mRNA sequence
Length = 688
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / -3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 572 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 405
>gb|CX169614.1|CX169614 G08_69-53_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 713
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 239 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 406
>gb|CX169882.1|CX169882 B11_69-49_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 715
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 241 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 408
>gb|CX171926.1|CX171926 E01_69-116_09.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 678
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 231 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 398
>gb|CX659089.1|CX659089 PO01026D05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01026D05 5', mRNA sequence
Length = 694
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 188 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 355
>gb|DT475295.1|DT475295 WS0126.BR_K17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_K17 5', mRNA sequence
Length = 643
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 260 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 427
>gb|DT477531.1|DT477531 WS02520.BR_D16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_D16 5', mRNA sequence
Length = 850
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 274 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 441
>gb|DT506339.1|DT506339 WS0189.C21_F04 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0189_F04 3', mRNA sequence
Length = 880
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 193 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 360
>gb|DV464439.1|DV464439 MTUNUL1.P27.E08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 835
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 125 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 292
>gb|DV466595.1|DV466595 MTUNUL1.P7.F11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 900
Score = 118 bits (252), Expect = 3e-026
Identities = 47/56 (83%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 158 LVLTTDPKPRLRWTAELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 325
>gb|BU834640.1|BU834640 T063H04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 636
Score = 116 bits (248), Expect = 1e-025
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKA+PKTIMR MG+ GLTLYHLKSH
Sbjct: 86 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKASPKTIMRTMGVKGLTLYHLKSH 253
>gb|BP922315.1|BP922315 BP922315 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-006_F19.f 5', mRNA sequence
Length = 486
Score = 115 bits (246), Expect = 2e-025
Identities = 46/56 (82%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KP L+WT ELHERFV+AV QLGGPDKATPKTIMR MG+ GLTLYHLKSH
Sbjct: 295 LVLTTDPKPMLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 462
>gb|CX657848.1|CX657848 PO01006A04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01006A04 5', mRNA sequence
Length = 638
Score = 114 bits (243), Expect = 6e-025
Identities = 46/71 (64%), Positives = 53/71 (74%)
Frame = +1 / +3
Query: 370 LLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGI 549
++H LVLS D KPRLKWT ELH RFVEAV+QLGG D+ATPK++MR+M I
Sbjct: 24 IIHKTEMGLRHQNTNLVLSADGKPRLKWTQELHRRFVEAVNQLGGADRATPKSLMRVMEI 203
Query: 550 PGLTLYHLKSH 582
PGLTLYHLKSH
Sbjct: 204 PGLTLYHLKSH 236
>gb|CX657851.1|CX657851 PO01006A08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01006A08 5', mRNA sequence
Length = 610
Score = 114 bits (243), Expect = 6e-025
Identities = 46/71 (64%), Positives = 53/71 (74%)
Frame = +1 / +3
Query: 370 LLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGI 549
++H LVLS D KPRLKWT ELH RFVEAV+QLGG D+ATPK++MR+M I
Sbjct: 24 IIHKTEMGLRHQNTNLVLSADGKPRLKWTQELHRRFVEAVNQLGGADRATPKSLMRVMEI 203
Query: 550 PGLTLYHLKSH 582
PGLTLYHLKSH
Sbjct: 204 PGLTLYHLKSH 236
>gb|DT471607.1|DT471607 WS01214.BR_H04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_H04 5', mRNA sequence
Length = 566
Score = 92.3 bits (195), Expect(2) = 4e-022
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMG 546
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR MG
Sbjct: 245 LVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMG 376
Score = 31.8 bits (63), Expect(2) = 4e-022
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 544 GIPGLTLYHLKSH 582
G+ GLTLYHLKSH
Sbjct: 375 GVKGLTLYHLKSH 413
>gb|CK106440.1|CK106440 UB20CPH01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB20CPH01 5', mRNA sequence
Length = 451
Score = 104 bits (221), Expect = 6e-022
Identities = 41/52 (78%), Positives = 46/52 (88%)
Frame = +1 / +1
Query: 424 STDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKS 579
+TD KPRL+WT ELHERFV+AV LGGPDKATPK IMR+MG+ GLTLYHLKS
Sbjct: 121 TTDPKPRLRWTLELHERFVDAVTLLGGPDKATPKAIMRIMGVKGLTLYHLKS 276
>gb|BU866913.1|BU866913 S072B11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 695
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 202 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 369
>gb|BU872341.1|BU872341 Q041H08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 582
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 114 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 281
>gb|BU873815.1|BU873815 Q060C05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 682
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 232 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 399
>gb|BU876622.1|BU876622 V023A09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 663
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 176 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 343
>gb|BU888654.1|BU888654 P010G03 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 661
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 201 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 368
>gb|AJ768036.1|AJ768036 AJ768036 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100013D05F1, mRNA sequence
Length = 538
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 233 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 400
>gb|BP922591.1|BP922591 BP922591 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-009_G19.f 5', mRNA sequence
Length = 518
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 230 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 397
>gb|BP926960.1|BP926960 BP926960 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-066_B08.f 5', mRNA sequence
Length = 450
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 250 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 417
>gb|DV464078.1|DV464078 MTUNUL1.P22.H05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 936
Score = 102 bits (217), Expect = 2e-021
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VL++D KPRL+WT +LH+RFV+AV QLGGP+KATPK I+R M + GLTL+HLKSH
Sbjct: 211 VVLTSDPKPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSH 378
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 281,625,451
Number of Sequences: 369679
Number of extensions: 3716211
Number of successful extensions: 51310
Number of sequences better than 1.0e-020: 42
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6950794778
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)