TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, comple... 150 e-121
gb|AJ776798.1|AJ776798 AJ776798 Populus euphratica root 3-6... 137 2e-031
gb|DN491629.1|DN491629 V008H01.3pR Populus male catkins cDN... 113 2e-026
gb|CX177966.1|CX177966 F04_45-113_12.ab1 leaf inoculated wi... 77 5e-026
gb|CX179866.1|CX179866 E06_45-82_10.ab1 leaf inoculated wit... 77 5e-026
gb|CX182471.1|CX182471 B01_45-90_03.ab1 leaf inoculated wit... 77 5e-026
gb|CX184042.1|CX184042 H09_45-84_15.ab1 leaf inoculated wit... 77 5e-026
gb|CX182180.1|CX182180 C01_45-23_05.ab1 leaf inoculated wit... 77 5e-026
>gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, complete sequence
Length = 103543
Score = 150 bits (323), Expect(5) = e-121
Identities = 61/75 (81%), Positives = 68/75 (90%)
Frame = +1 / -3
Query: 127 GPPLSGRYDMGAICMIEHSEKLQNLVNDALDKGAEIAVRGSFGNLGEDAVDQFFPPTGLV 306
GPPL+GRYDMGAIC+ EHS+KLQ LVNDAL+KGAEI VRGSFG+LGE AVDQF+PPT LV
Sbjct: 70835 GPPLAGRYDMGAICLQEHSDKLQILVNDALEKGAEIVVRGSFGHLGEGAVDQFYPPTVLV 70656
Query: 307 NVDHTMKIMQEETFG 351
NVDHTMK+MQEE G
Sbjct: 70655 NVDHTMKLMQEEVAG 70611
Score = 139 bits (298), Expect(5) = e-121
Identities = 54/69 (78%), Positives = 64/69 (92%)
Frame = +1 / -2
Query: 340 ETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRAIRIASQLHCGVAAINDFAS 519
+TFGPI+PIMKFS+DEEA+KLANDS+YGLGCAVFSG+Q+RA IASQ+HCGVAA+NDFAS
Sbjct: 70299 QTFGPIMPIMKFSTDEEAVKLANDSRYGLGCAVFSGSQRRAREIASQIHCGVAAVNDFAS 70120
Query: 520 SYMCQSLPF 546
+YMCQ F
Sbjct: 70119 NYMCQVFLF 70093
Score = 115 bits (246), Expect(5) = e-121
Identities = 46/49 (93%), Positives = 47/49 (95%)
Frame = +1 / -3
Query: 532 QSLPFGGVKDSGFGRFAGVEGLRACCLVKSVVEDRLWPYIRTVIPKPIQ 678
QSLPFGGVK SGFGRFAGVEGLRACCLVKSVVEDRLWPYI+T IPKPIQ
Sbjct: 69674 QSLPFGGVKHSGFGRFAGVEGLRACCLVKSVVEDRLWPYIKTKIPKPIQ 69528
Score = 112 bits (239), Expect(5) = 1e-069
Identities = 52/75 (69%), Positives = 54/75 (72%)
Frame = -3 / +1
Query: 350 PNVSSCIIFIV*STFTRPVGGKN*STASSPRLPKLPLTAISAPLSRASLTRF*SFSECSI 171
P SSCI FIV STFT VGG N*STA SPR PKLP T ISAP S+AS TR S SECS
Sbjct: 70612 PATSSCISFIVWSTFTSTVGG*N*STAPSPRWPKLPRTTISAPFSKASFTRIWSLSECSC 70791
Query: 170 IQIAPMSYLPDNGGP 126
IAP+SYLP GGP
Sbjct: 70792 KHIAPISYLPARGGP 70836
Score = 102 bits (218), Expect(5) = 1e-069
Identities = 47/63 (74%), Positives = 51/63 (80%)
Frame = -3 / +2
Query: 530 HM*LEAKSLIAATPQCNWDAILMARFWLPEKTAQPRPYFESFASLIASSSELNFMIGIIG 351
HM* +AKSL AATPQC +AI +AR LPEKTAQP PY ESFASL ASSS LNF+IGIIG
Sbjct: 70109 HM*FDAKSLTAATPQCI*EAISLARR*LPEKTAQPSPYLESFASLTASSSVLNFIIGIIG 70288
Query: 350 PNV 342
P V
Sbjct: 70289 PKV 70297
Score = 77.6 bits (163), Expect(5) = e-121
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +1 / -3
Query: 10 AALQSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISV 126
A LQSSGQNCAGAERFYVH DIYS+FVS++ K VKS+SV
Sbjct: 71228 AVLQSSGQNCAGAERFYVHRDIYSSFVSEVTKIVKSVSV 71112
Score = 73.9 bits (155), Expect(4) = 3e-039
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = -2 / +3
Query: 342 LFLHNFHCVINIHQASWWEKLINCIFPKIAKTPPDGNFGTFV*SIINKILKFLRVLNHTD 163
LFLH FHCV+NI++ +LINC F ++AKT + NF +F+* II + L+ +R+L
Sbjct: 70620 LFLHQFHCVVNIYKHGGRVELINCTFTQMAKTSANNNFCSFL*GIIYEDLELIRMLLQAY 70799
Query: 162 CTHVI 148
C H+I
Sbjct: 70800 CPHII 70814
Score = 70.7 bits (148), Expect(4) = 3e-039
Identities = 34/65 (52%), Positives = 41/65 (63%)
Frame = -2 / +1
Query: 534 LAHVT*SKIIDCCYPTV*LGRYSDGTLLVARKNSTAKTIF*VVCKFDSLFIRTEFHDWYN 355
L HV * K+I+C T+ L + L RKNS AK I *V+CKFDSLFI T+FH +N
Sbjct: 70105 LTHVI*CKVINCSNSTMYLRSNLSSSALTTRKNSAAKPIS*VICKFDSLFISTKFHYRHN 70284
Query: 354 RSKCL 340
SK L
Sbjct: 70285 WSKSL 70299
Score = 64.8 bits (135), Expect(5) = 1e-069
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = -3 / +1
Query: 677 WIGFGITVLIYGHNLSSTTDFTRQQAR 597
WIGFGI VL+YGHNLSSTTDFTRQQAR
Sbjct: 69529 WIGFGILVLMYGHNLSSTTDFTRQQAR 69609
Score = 64.8 bits (135), Expect(4) = 3e-039
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = -2 / +3
Query: 678 LDRLRDHCSNIWPQSIFYNRLHKAASSQAFYASKSPESAVFNTTEWQRL 532
LDRL N+WPQ IF+N HK AS Q+F+ SKS +S V +TT+WQ L
Sbjct: 69528 LDRLWYLGFNVWPQPIFHN*FHKTASPQSFHTSKSAKSTVLHTTKWQGL 69674
Score = 64.8 bits (135), Expect(5) = e-121
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = +1 / -3
Query: 679 YPVSEHGFEFQQLLVETLYGYSVWDRLRSLVNLIKMVTEQNSA 807
YPV E+ FEFQQ LVE LYG ++ D+LR+ VN++K+++EQNS+
Sbjct: 69398 YPVGENSFEFQQSLVEALYGLNIRDKLRAGVNVLKIMSEQNSS 69270
Score = 63.4 bits (132), Expect(5) = 2e-024
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +3 / -1
Query: 342 DIWTYYTNHEIQF**RGYQTCKRLKIWSWLCCFFG 446
D WT Y ++EI +**RG QTCK LKIW+WL CFFG
Sbjct: 70297 DFWTNYADNEI*Y**RGCQTCK*LKIWAWLRCFFG 70193
Score = 52.8 bits (109), Expect(5) = 1e-069
Identities = 26/39 (66%), Positives = 27/39 (69%)
Frame = -3 / +1
Query: 125 TLIDLTVFTICETKAE*MSS*T*NLSAPAQFCPLDCRAA 9
T DLT+ T E*MS *T*NLSAPAQFCPLD R A
Sbjct: 71113 TETDLTILVTSLTNEE*MSL*T*NLSAPAQFCPLD*RTA 71229
Score = 52.8 bits (109), Expect(4) = 1e-021
Identities = 29/68 (42%), Positives = 36/68 (52%)
Frame = -1 / +2
Query: 352 VQMSLLA*FSLCDQHSPGQLVGKIDQLHLPQDCQNSP*RQFRHLCLEHH*QDSEVSQSAQ 173
V + LLA SLC QH + G+ DQLHL D QN +QF L L HH + Q+A
Sbjct: 70610 VLLPLLASVSLCGQHLQARWEGRTDQLHLHPDGQNFREQQFLLLSLRHHLRGFGAYQNAL 70789
Query: 172 SYRLHPCH 149
+ L P H
Sbjct: 70790 ASILPPYH 70813
Score = 50.6 bits (104), Expect(4) = 1e-021
Identities = 28/48 (58%), Positives = 30/48 (62%)
Frame = -1 / +2
Query: 676 G*ASGSLF*YMATIYLLQQTSQGSKLASLLRQQISRIRCL*HHRMAKT 533
G*A S F* MAT YL Q SQ SK A L QQI +I C HH+MA T
Sbjct: 69530 G*ALVSWF*CMATTYLPQLISQDSKPAILPHQQICQIHCASHHQMAGT 69673
Score = 45.5 bits (93), Expect(4) = 1e-021
Identities = 25/35 (71%), Positives = 25/35 (71%)
Frame = -1 / +3
Query: 445 PKKQHSQDHILSRLQV**PLHQN*IS*LV**VQMS 341
PKKQ SQ HILS LQV* PLHQ *IS * VQ S
Sbjct: 70194 PKKQRSQAHILSHLQV*QPLHQY*ISLSA*LVQKS 70298
Score = 44.1 bits (90), Expect(5) = 2e-024
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +3 / -2
Query: 594 LASLLPCEVCCRR*IVAIY*NSDPEAYP 677
+A LL CE+ C R*+VAI+*N D +AYP
Sbjct: 69612 IAGLLSCEISCGR*VVAIH*NQDTKAYP 69529
Score = 41.8 bits (85), Expect(5) = 2e-024
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3 / -2
Query: 6 RSCSAI*WAELRWC*KILCSR*HLFCLC 89
+ CS+I WAEL W *++LCS HLF +C
Sbjct: 71232 QGCSSIKWAELCWG*EVLCS*GHLFFIC 71149
Score = 41.4 bits (84), Expect(5) = 1e-069
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3 / +1
Query: 797 CSVTIFIRFTRDRNLSHTL*PYRVSTSNCWNSNPCSETGYW 675
CS IF T R+LS P ST +CWNS S TGY+
Sbjct: 69280 CSDMIFKTLTPARSLSRMFKP*SASTRDCWNSKLFSPTGYY 69402
Score = 40.9 bits (83), Expect(5) = 2e-024
Identities = 31/71 (43%), Positives = 37/71 (52%)
Frame = +2 / -1
Query: 149 MTWVQSV*LSTLRNFRILLMML*TKVPKLPSGGVLAILGKMQLINFSHQLAW*MLITQ*K 328
M W Q S L + + MM * K KL VLAI K+QLI+ + *ML TQ*
Sbjct: 70813 MIWGQYACKSILISSKSS*MMP*RKEQKLLFAEVLAIWVKVQLISSTLPPCL*MLTTQ*N 70634
Query: 329 LCKKRHLDLLY 361
CKKR D L+
Sbjct: 70633 *CKKR*QDSLF 70601
Score = 36.3 bits (73), Expect(4) = 3e-039
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -2 / +3
Query: 117 RFDCLHYL*NKGRIDVIVNIKSFSTSAILPTRLQSS 10
RF+ Y +K RIDV +NI+ S S ILPT L++S
Sbjct: 71121 RFNNFSYFTDK*RIDVPMNIEPLSPSTILPT*LKNS 71228
Score = 35.9 bits (72), Expect(4) = 1e-021
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -1 / +2
Query: 88 QRQNRCHREHKIFQHQRNSAH*IAEQ 11
Q +NRC EH+ Q Q NSAH I EQ
Sbjct: 71150 QMKNRCPYEHRTSQPQHNSAHLIEEQ 71227
Score = 28.6 bits (56), Expect(5) = 2e-024
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3 / -2
Query: 699 I*VPAVACGDSVWL*RVGQVAVPCESYKDGYRAE 800
+*VPAV+C ++WL G A + ++D R +
Sbjct: 69378 L*VPAVSCRSTLWLEHTG*AASGGQCFEDHVRTK 69277
>gb|AJ776798.1|AJ776798 AJ776798 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400018F06F1, mRNA sequence
Length = 463
Score = 137 bits (293), Expect = 2e-031
Identities = 55/68 (80%), Positives = 62/68 (91%)
Frame = +1 / +3
Query: 10 AALQSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEK 189
A LQSSGQNCAGAERFYVH DIYS+FVS++ K VKS+SVGPPL+GRYDMGAIC+ EHS+K
Sbjct: 258 AVLQSSGQNCAGAERFYVHRDIYSSFVSEVTKIVKSVSVGPPLTGRYDMGAICLQEHSDK 437
Query: 190 LQNLVNDA 213
LQ LVNDA
Sbjct: 438 LQILVNDA 461
>gb|DN491629.1|DN491629 V008H01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V008H01 3', mRNA sequence
Length = 267
Score = 113 bits (241), Expect(2) = 2e-026
Identities = 45/65 (69%), Positives = 56/65 (86%)
Frame = +1 / -1
Query: 589 EGLRACCLVKSVVEDRLWPYIRTVIPKPIQYPVSEHGFEFQQLLVETLYGYSVWDRLRSL 768
+GLRACCLVKSVVEDRL PYI+T IPKPIQYPV E+ FEFQQ LVE LYG ++ D++R+
Sbjct: 225 QGLRACCLVKSVVEDRLCPYIKTKIPKPIQYPVGENSFEFQQSLVEALYGLNIRDKVRAG 46
Query: 769 VNLIK 783
VN+++
Sbjct: 45 VNVLQ 31
Score = 26.3 bits (51), Expect(2) = 2e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 550 GVKDSGFGRFA 582
GVK SGFGRFA
Sbjct: 266 GVKHSGFGRFA 234
>gb|CX177966.1|CX177966 F04_45-113_12.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 721
Score = 77.1 bits (162), Expect(3) = 5e-026
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1 / -1
Query: 283 FFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRA 462
++PPT L NV M +EE FGP+ I E A++LANDS++GL +F+ ++ +A
Sbjct: 355 YYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQA 176
Query: 463 IRIASQLHCGVAAINDFASS 522
++A++L CG IN + +S
Sbjct: 175 RQMAARLECGGVFINGYCAS 116
Score = 51.9 bits (107), Expect(3) = 5e-026
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +1 / -1
Query: 19 QSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEKLQN 198
Q++GQ CA A+RF + + I SAF + V ++ +G P +G + + ++L +
Sbjct: 607 QNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHH 428
Query: 199 LVNDALDKGAEIAVRG 246
V L +GA + + G
Sbjct: 427 QVEKTLAQGARLLLGG 380
Score = 27.2 bits (53), Expect(3) = 5e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 544 FGGVKDSGFGR 576
FGGVK SGFGR
Sbjct: 100 FGGVKKSGFGR 68
>gb|CX179866.1|CX179866 E06_45-82_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 717
Score = 77.1 bits (162), Expect(3) = 5e-026
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1 / -1
Query: 283 FFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRA 462
++PPT L NV M +EE FGP+ I E A++LANDS++GL +F+ ++ +A
Sbjct: 354 YYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQA 175
Query: 463 IRIASQLHCGVAAINDFASS 522
++A++L CG IN + +S
Sbjct: 174 RQMAARLECGGVFINGYCAS 115
Score = 51.9 bits (107), Expect(3) = 5e-026
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +1 / -1
Query: 19 QSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEKLQN 198
Q++GQ CA A+RF + + I SAF + V ++ +G P +G + + ++L +
Sbjct: 606 QNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHH 427
Query: 199 LVNDALDKGAEIAVRG 246
V L +GA + + G
Sbjct: 426 QVEKTLAQGARLLLGG 379
Score = 27.2 bits (53), Expect(3) = 5e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 544 FGGVKDSGFGR 576
FGGVK SGFGR
Sbjct: 99 FGGVKKSGFGR 67
>gb|CX182471.1|CX182471 B01_45-90_03.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 676
Score = 77.1 bits (162), Expect(3) = 5e-026
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1 / -1
Query: 283 FFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRA 462
++PPT L NV M +EE FGP+ I E A++LANDS++GL +F+ ++ +A
Sbjct: 355 YYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQA 176
Query: 463 IRIASQLHCGVAAINDFASS 522
++A++L CG IN + +S
Sbjct: 175 RQMAARLECGGVFINGYCAS 116
Score = 51.9 bits (107), Expect(3) = 5e-026
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +1 / -1
Query: 19 QSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEKLQN 198
Q++GQ CA A+RF + + I SAF + V ++ +G P +G + + ++L +
Sbjct: 607 QNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHH 428
Query: 199 LVNDALDKGAEIAVRG 246
V L +GA + + G
Sbjct: 427 QVEKTLAQGARLLLGG 380
Score = 27.2 bits (53), Expect(3) = 5e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 544 FGGVKDSGFGR 576
FGGVK SGFGR
Sbjct: 100 FGGVKKSGFGR 68
>gb|CX184042.1|CX184042 H09_45-84_15.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 649
Score = 77.1 bits (162), Expect(3) = 5e-026
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1 / -3
Query: 283 FFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRA 462
++PPT L NV M +EE FGP+ I E A++LANDS++GL +F+ ++ +A
Sbjct: 329 YYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQA 150
Query: 463 IRIASQLHCGVAAINDFASS 522
++A++L CG IN + +S
Sbjct: 149 RQMAARLECGGVFINGYCAS 90
Score = 51.9 bits (107), Expect(3) = 5e-026
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +1 / -3
Query: 19 QSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEKLQN 198
Q++GQ CA A+RF + + I SAF + V ++ +G P +G + + ++L +
Sbjct: 581 QNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHH 402
Query: 199 LVNDALDKGAEIAVRG 246
V L +GA + + G
Sbjct: 401 QVEKTLAQGARLLLGG 354
Score = 27.2 bits (53), Expect(3) = 5e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -3
Query: 544 FGGVKDSGFGR 576
FGGVK SGFGR
Sbjct: 74 FGGVKKSGFGR 42
>gb|CX182180.1|CX182180 C01_45-23_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 607
Score = 77.1 bits (162), Expect(3) = 5e-026
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = +1 / -2
Query: 283 FFPPTGLVNVDHTMKIMQEETFGPIIPIMKFSSDEEAIKLANDSKYGLGCAVFSGNQKRA 462
++PPT L NV M +EE FGP+ I E A++LANDS++GL +F+ ++ +A
Sbjct: 336 YYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFGLSATIFTTDETQA 157
Query: 463 IRIASQLHCGVAAINDFASS 522
++A++L CG IN + +S
Sbjct: 156 RQMAARLECGGVFINGYCAS 97
Score = 51.9 bits (107), Expect(3) = 5e-026
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +1 / -2
Query: 19 QSSGQNCAGAERFYVHDDIYSAFVSQIVKTVKSISVGPPLSGRYDMGAICMIEHSEKLQN 198
Q++GQ CA A+RF + + I SAF + V ++ +G P +G + + ++L +
Sbjct: 588 QNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHH 409
Query: 199 LVNDALDKGAEIAVRG 246
V L +GA + + G
Sbjct: 408 QVEKTLAQGARLLLGG 361
Score = 27.2 bits (53), Expect(3) = 5e-026
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -2
Query: 544 FGGVKDSGFGR 576
FGGVK SGFGR
Sbjct: 81 FGGVKKSGFGR 49
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 559,446,292
Number of Sequences: 369679
Number of extensions: 7741300
Number of successful extensions: 38494
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 15475378221
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)