TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2649891.2.1
(621 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 102 2e-040
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 102 2e-040
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 102 2e-040
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 102 2e-040
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 102 2e-040
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 102 2e-040
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 102 2e-040
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 101 5e-040
gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Popul... 57 2e-026
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 100 3e-025
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 72 1e-020
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 557 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 378
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 377 KSVELKQ 357
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 242 SGKTIVASGVIPAGWAPGQTYRSLVNFN 159
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 329 MQKSWGAVWKLDAGSLLRAPLSIKLTS 249
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 609 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 430
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 429 KSVELKQ 409
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -3
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 294 SGKTIVASGVIPAGWAPGQTYRSLVNFN 211
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 381 MQKSWGAVWKLDAGSLLRAPLSIKLTS 301
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 557 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 378
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 377 KSVELKQ 357
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -2
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 242 SGKTIVASGVIPAGWAPGQTYRSLVNFN 159
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 329 MQKSWGAVWKLDAGSLLRAPLSIKLTS 249
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 537 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 358
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 357 KSVELKQ 337
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 222 SGKTIVASGVIPAGWAPGQTYRSLVNFN 139
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 309 MQKSWGAVWKLDAGSLLRAPLSIKLTS 229
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 536 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 357
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 356 KSVELKQ 336
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -3
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 221 SGKTIVASGVIPAGWAPGQTYRSLVNFN 138
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 308 MQKSWGAVWKLDAGSLLRAPLSIKLTS 228
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 633 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 454
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 453 KSVELKQ 433
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 318 SGKTIVASGVIPAGWAPGQTYRSLVNFN 235
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 405 MQKSWGAVWKLDAGSLLRAPLSIKLTS 325
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 102 bits (218), Expect(3) = 2e-040
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2 / -2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 561 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 382
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 381 KSVELKQ 361
Score = 57.0 bits (118), Expect(3) = 2e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -2
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 246 SGKTIVASGVIPAGWAPGQTYRSLVNFN 163
Score = 44.1 bits (90), Expect(3) = 2e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -2
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 333 MQKSWGAVWKLDAGSLLRAPLSIKLTS 253
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 101 bits (215), Expect(3) = 5e-040
Identities = 41/67 (61%), Positives = 51/67 (76%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+I++ RVPC+W G + F VD+GSN Y A LVEYE GDG+L
Sbjct: 117 GAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATLVEYEDGDGDL 296
Query: 440 RSVELMQ 420
+SVEL Q
Sbjct: 297 KSVELKQ 317
Score = 57.0 bits (118), Expect(3) = 5e-040
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / +3
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 432 SGKTIVASGVIPAGWAPGQTYRSLVNFN 515
Score = 44.1 bits (90), Expect(3) = 5e-040
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 345 MQKSWGAVWKLDAGSLLRAPLSIKLTS 425
>gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I10 3', mRNA sequence
Length = 458
Score = 57.0 bits (118), Expect(3) = 2e-026
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -1
Query: 299 SGRTVVASDVIPAGWTPGATYRSVVNFS 216
SG+T+VAS VIPAGW PG TYRS+VNF+
Sbjct: 242 SGKTIVASGVIPAGWAPGQTYRSLVNFN 159
Score = 55.6 bits (115), Expect(3) = 2e-026
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = -2 / -1
Query: 521 IAFKVDAGSNANYLAVLVEYESGDGELRSVELMQ 420
+ F VD+GSN Y A +VEYE GDGEL+SVEL Q
Sbjct: 458 VTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQ 357
Score = 44.1 bits (90), Expect(3) = 2e-026
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = -2 / -1
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQ+SWG VW+ ++G+ L+ P S++LTS
Sbjct: 329 MQKSWGAVWKLDAGSLLRAPLSIKLTS 249
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 100 bits (214), Expect(2) = 3e-025
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = -2 / +2
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
GAMA G+ DQLR+AG L+IQ+ RVPC+W G + F VD+GSN Y A +VEYE GDGEL
Sbjct: 482 GAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATVVEYEDGDGEL 661
Query: 440 RSVEL 426
+SVEL
Sbjct: 662 KSVEL 676
Score = 34.1 bits (68), Expect(2) = 3e-025
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2 / +1
Query: 383 MQQSWGXVWRXNSGATLQGP 324
MQ+SWG VW+ ++G+ L+ P
Sbjct: 709 MQKSWGAVWKLDAGSLLRAP 768
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 71.6 bits (150), Expect(3) = 1e-020
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = -2 / +1
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G MA G+ QLR+ G + + Y R PC++ G +IAF V+ GS +L++LVE+E GDG++
Sbjct: 94 GRMAISGENGQLRNRGEIPVIYRRTPCNYPGKNIAFHVNEGSTDYWLSILVEFEDGDGDV 273
Query: 440 RSVELMQ 420
S+ + +
Sbjct: 274 GSMHIRE 294
Score = 42.3 bits (86), Expect(3) = 1e-020
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -2 / +1
Query: 308 TSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
T +GRT+ A +VIP WTP ATY S +NF
Sbjct: 394 TLTTGRTLSAREVIPRNWTPKATYTSRLNF 483
Score = 23.1 bits (44), Expect(3) = 1e-020
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 335 LQGPFSVRLTS 303
L+GPFSV+LT+
Sbjct: 364 LKGPFSVKLTT 396
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 231,506,430
Number of Sequences: 369679
Number of extensions: 2577403
Number of successful extensions: 40527
Number of sequences better than 1.0e-020: 11
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7587135145
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)