TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.3
(1540 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Popul... 155 2e-057
gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Popu... 171 1e-056
gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA librar... 140 4e-049
gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA li... 136 1e-046
gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Libra... 134 2e-045
gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Librar... 126 8e-045
gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal libra... 102 3e-037
gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA li... 100 5e-037
gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Po... 130 2e-034
gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus ... 82 3e-033
gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Po... 120 1e-031
gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Po... 130 1e-031
gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus ... 121 2e-031
gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Librar... 135 6e-031
gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Po... 130 8e-031
gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Popul... 130 9e-031
gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Libra... 132 5e-030
gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Librar... 130 2e-029
gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Popu... 116 1e-026
gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, compl... 69 1e-023
gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus... 68 4e-023
gb|CN517286.1|CN517286 GQ0093.B3_N07 GQ009 Populus trichoca... 102 8e-023
>gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 5', mRNA sequence
Length = 886
Score = 155 bits (334), Expect(4) = 2e-057
Identities = 65/126 (51%), Positives = 85/126 (67%)
Frame = +2 / +3
Query: 497 DCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIH 676
DC SL NN ++G+ LNS+ FH+ + C+++ ++ V V+A GDSPNTDGIH
Sbjct: 498 DCPSGATSLEFSNSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIH 677
Query: 677 MGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 856
+ S+GVTI N+ IG GDDC+SIGPGTS + I V CGPGHGISIGSLG+ E V ++
Sbjct: 678 VQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNV 857
Query: 857 NVKDCT 874
VK T
Sbjct: 858 TVKTTT 875
Score = 97.3 bits (206), Expect(2) = 2e-023
Identities = 47/109 (43%), Positives = 61/109 (55%)
Frame = -2 / -1
Query: 822 PRLPMLMPWPGPQVTPVMFTLEVPGPMEMQSSPTPMTVLVMVTPDESPMWMPSVLGLSPG 643
P+LPML+PWPGP T + LEVPGP++ QSSP P+ MVTP + +PSVLGLSP
Sbjct: 823 PKLPMLIPWPGPHATFSIQRLEVPGPIDTQSSPVPILEFKMVTPVDD*T*IPSVLGLSPA 644
Query: 642 AVTLTSLISMSLHLYMFMWKNLELSSVIPDTSPLFTKSITSELGRILQS 496
A TLT M MW + P + LF +S++ + QS
Sbjct: 643 AETLTPCTLTFWQALMTMWNIWLFNDANPVIAMLFELENSSDVAPLGQS 497
Score = 72.5 bits (152), Expect(4) = 2e-057
Identities = 26/60 (43%), Positives = 36/60 (60%)
Frame = +2 / +3
Query: 152 FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTI 331
+ + GA +GKTDSTKA AW+ AC T T+ +PKG F +G + F GPCK + +
Sbjct: 159 YSVLSYGAMPDGKTDSTKAFAAAWSQACASTQPATVSVPKGSFALGQVRFQGPCKNNAIL 338
Score = 36.3 bits (73), Expect(2) = 2e-023
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = -2 / -1
Query: 315 LHGPVKLSGPTRKSPLGMRIVCFPVPPHADAHASCTAFVLSVLPLPEAP 169
L GP L+ P K PLG V V HA A+ A V SV P AP
Sbjct: 322 LQGP*NLT*PKAKLPLGTETVAGCVEAHACDQAAAKALVESVFPSGMAP 176
Score = 26.7 bits (52), Expect(4) = 2e-057
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2 / +3
Query: 323 VTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITG 433
+ ++++G LLA +D NW+ V+ + I+G
Sbjct: 333 ILVRIDGTLLAPSDYGVLGRAQNWLIFEHVNGVTISG 443
Score = 25.4 bits (49), Expect(4) = 2e-057
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / +3
Query: 416 NLVITGKGKLDGQGPAVWS 472
N V G LDGQG +WS
Sbjct: 423 NGVTISGGTLDGQGAGLWS 479
>gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 3', mRNA sequence
Length = 891
Score = 171 bits (367), Expect(2) = 1e-056
Identities = 72/139 (51%), Positives = 93/139 (66%)
Frame = +2 / -1
Query: 497 DCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIH 676
DC SL NN ++G+ LNS+ FH+ + C+++ ++ V V+A GDSPNTDGIH
Sbjct: 855 DCPSGATSLEFSNSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIH 676
Query: 677 MGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 856
+ S+GVTI N+ IG GDDC+SIGPGTS + I V CGPGHGISIGSLG+ E V ++
Sbjct: 675 VQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNV 496
Query: 857 NVKDCTLKKTANGVRIKAY 913
VK T T NGVRIK +
Sbjct: 495 TVKTTTFTGTENGVRIKTW 439
Score = 105 bits (223), Expect(2) = 3e-025
Identities = 55/139 (39%), Positives = 75/139 (53%)
Frame = -2 / +2
Query: 912 YALMRTPLAVFLSVQSLTLISVTSFSSLYRPRLPMLMPWPGPQVTPVMFTLEVPGPMEMQ 733
+ L+ TP +V ++V T+ T S P+LPML+PWPGP T + LEVPGP++ Q
Sbjct: 440 HVLILTPFSVPVNVVVFTVTFCTPAS*ESLPKLPMLIPWPGPHATFSIQRLEVPGPIDTQ 619
Query: 732 SSPTPMTVLVMVTPDESPMWMPSVLGLSPGAVTLTSLISMSLHLYMFMWKNLELSSVIPD 553
SSP P+ MVTP + +PSVLGLSP A TLT M MW + P
Sbjct: 620 SSPVPILEFKMVTPVDD*T*IPSVLGLSPAAETLTPCTLTFWQALMTMWNIWLFNDANPV 799
Query: 552 TSPLFTKSITSELGRILQS 496
+ LF +S++ + QS
Sbjct: 800 IAMLFELENSSDVAPLGQS 856
Score = 70.7 bits (148), Expect(2) = 1e-056
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +2 / -1
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNL 1117
A I +++ M + PI+ID YCP + S V + DVT+++I G+S+T AV
Sbjct: 417 ARNILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKF 238
Query: 1118 LCSAKIPCTGVTMDDVNIKYS 1180
CS PC+G+ ++DV + Y+
Sbjct: 237 DCSKTNPCSGIKLEDVKLTYN 175
Score = 35.0 bits (70), Expect(2) = 3e-025
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = -2 / +2
Query: 1164 TSSMVTPVHGILAEQSRLTASGVEEVPVMFLKVTSLTVTLE 1042
TSS + P HG + QS TAS V + P + VTSL T E
Sbjct: 191 TSSNLIPEHGFVLLQSNFTASSVADDPWISW*VTSLIFTPE 313
>gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 728
Score = 140 bits (301), Expect(2) = 4e-049
Identities = 55/119 (46%), Positives = 81/119 (68%)
Frame = +2 / +3
Query: 560 ITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCI 739
+ + N++ H++ K +L+ ++ VT+P +SPNTDGIH+ + + IT++VIG GDDCI
Sbjct: 3 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 182
Query: 740 SIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
SI G+ V G+TCGPGHGISIGSLG + + V+++ V L TANGVRIK ++
Sbjct: 183 SIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAKLSGTANGVRIKTWQ 359
Score = 75.8 bits (159), Expect(2) = 4e-049
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +2 / +3
Query: 941 SKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLL 1120
S I ++NI+M PIIID YC S + VK+V +KNI GTS++ A+
Sbjct: 378 SNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRFD 557
Query: 1121 CSAKIPCTGVTMDDVNIKYSG 1183
CS PC G+ + D+N++ +G
Sbjct: 558 CSKAYPCQGILLQDINLERAG 620
>gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 5', mRNA sequence
Length = 820
Score = 136 bits (291), Expect(2) = 1e-046
Identities = 54/119 (45%), Positives = 80/119 (67%)
Frame = +2 / +2
Query: 560 ITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCI 739
+ + N++ H++ K +L+ ++ VT+P +SPNTDGIH+ + + IT++VIG GDDCI
Sbjct: 5 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 184
Query: 740 SIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
SI G+ V G+TCGPGHGISIGSL + + V+++ V L TANGVRIK ++
Sbjct: 185 SIVSGSHNVQAKGITCGPGHGISIGSL*VHDSKDHVSEVTVNGAKLSGTANGVRIKTWQ 361
Score = 72.1 bits (151), Expect(2) = 1e-046
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +2 / +2
Query: 941 SKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLL 1120
S I ++NI+M PIIID YC S + VK+V +KNI GTS++ A+
Sbjct: 380 SNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRFD 559
Query: 1121 CSAKIPCTGVTMDDVNIKYSG 1183
CS PC + + D+N++ +G
Sbjct: 560 CSKAYPCQRILLQDINLERAG 622
>gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 689
Score = 134 bits (287), Expect(3) = 2e-045
Identities = 56/109 (51%), Positives = 74/109 (67%)
Frame = +2 / -2
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
NN ++ G+ LNS+ FH+ + C+++ ++ V V A GDSPNTDGIH+ S+ V I N+
Sbjct: 328 NNIKIDGLLSLNSQMFHIAINGCQNVRVQGVRVIAAGDSPNTDGIHVQLSTDVAIMNSST 149
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVK 865
GDDCISIGPGT + I V CGPGHGISIGSL + DE V ++ VK
Sbjct: 148 KTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNVTVK 2
Score = 59.7 bits (124), Expect(3) = 2e-045
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2 / -2
Query: 182 NGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTG 307
NGK DST+A +AW +ACG T I IPKG +L+G + FTG
Sbjct: 682 NGKXDSTQAFLDAWTAACGSTDPTMIXIPKGRYLLGSVAFTG 557
Score = 28.6 bits (56), Expect(3) = 2e-045
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2 / -2
Query: 320 DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITG 433
D+TI+++G L+A D NW+ V + I G
Sbjct: 538 DITIRIDGTLIAPEDYRILGLASNWLSFEGVSGVSIVG 425
>gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 695
Score = 126 bits (270), Expect(3) = 8e-045
Identities = 54/106 (50%), Positives = 72/106 (67%)
Frame = +2 / +1
Query: 539 NNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVI 718
NN ++ G+ LNS+ FH+ + +++ ++ V V A GDSPNTDGIH+ S+ V I N+ I
Sbjct: 376 NNIKIDGLLSLNSQMFHIVINGRQNVRVQGVRVIAAGDSPNTDGIHVQLSTDVAIMNSSI 555
Query: 719 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 856
GDDCISIGPGT + I V CGPGHGISIGSL + DE V ++
Sbjct: 556 KTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNV 693
Score = 65.2 bits (136), Expect(3) = 8e-045
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +2 / +1
Query: 170 GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTG 307
GA NGKTDST+A +AW +ACG T I IPKG +L+G + FTG
Sbjct: 10 GARPNGKTDSTQAFLDAWTAACGSTDPTMIYIPKGRYLLGSVAFTG 147
Score = 28.6 bits (56), Expect(3) = 8e-045
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2 / +1
Query: 320 DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITG 433
D+TI+++G L+A D NW+ V + I G
Sbjct: 166 DITIRIDGTLIAPEDYRILGLASNWLSFEGVSGVSIVG 279
>gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 736
Score = 102 bits (217), Expect(2) = 3e-037
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +2 / +2
Query: 686 SSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVK 865
+ + IT++VIG GDDCISI G+ V TG+TCGPGHGISIGSLG + + V+ + V
Sbjct: 14 TQNIQITDSVIGTGDDCISIVSGSHHVQATGITCGPGHGISIGSLGAHDSKDHVSGVTVS 193
Query: 866 DCTLKKTANGVRIKAYE 916
L TANGVRIK ++
Sbjct: 194 GAKLSGTANGVRIKTWQ 244
Score = 74.4 bits (156), Expect(2) = 3e-037
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +2 / +2
Query: 941 SKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLL 1120
S I ++NI+M PIIID YC S + VK+V +KNI GTS++ A+
Sbjct: 263 SNIKFQNIEMNKVTNPIIIDQNYCDQDKPCKQQKSALQVKNVMYKNIKGTSASEVAMRFD 442
Query: 1121 CSAKIPCTGVTMDDVNIKYSG 1183
CS PC G+ + D+N++ +G
Sbjct: 443 CSKAYPCQGILLQDINLERAG 505
>gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 3', mRNA sequence
Length = 768
Score = 100 bits (212), Expect(2) = 5e-037
Identities = 40/74 (54%), Positives = 52/74 (70%)
Frame = +2 / -2
Query: 695 VTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCT 874
+ IT++VIG GDDCISI G+ V G+TCGPGHGISIGSLG + + V+++ V
Sbjct: 767 IQITDSVIGTGDDCISIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAK 588
Query: 875 LKKTANGVRIKAYE 916
L TANGVRIK ++
Sbjct: 587 LSGTANGVRIKTWQ 546
Score = 75.8 bits (159), Expect(2) = 5e-037
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +2 / -2
Query: 941 SKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLL 1120
S I ++NI+M PIIID YC S + VK+V +KNI GTS++ A+
Sbjct: 527 SNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRFD 348
Query: 1121 CSAKIPCTGVTMDDVNIKYSG 1183
CS PC G+ + D+N++ +G
Sbjct: 347 CSKAYPCQGILLQDINLERAG 285
>gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032F08 5', mRNA sequence
Length = 696
Score = 130 bits (278), Expect(2) = 2e-034
Identities = 54/122 (44%), Positives = 76/122 (62%)
Frame = +2 / +3
Query: 551 VSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGD 730
V+GIT+ NS H+ C + + D +P +SPNTDGIH+ +S V I ++ + GD
Sbjct: 282 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 461
Query: 731 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKA 910
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T GVRIK
Sbjct: 462 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 641
Query: 911 YE 916
++
Sbjct: 642 WQ 647
Score = 37.3 bits (75), Expect(2) = 2e-034
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWS 472
WIE +++ + I GKG +DGQG W+
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWN 176
>gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_M05
3', mRNA sequence
Length = 928
Score = 81.7 bits (172), Expect(2) = 3e-033
Identities = 33/78 (42%), Positives = 50/78 (64%)
Frame = +2 / -3
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNL 1117
A+ I ++NI ME+ PIIID YC + AN S V V++++F+ I GTS+T EA+
Sbjct: 716 ATNITFQNIFMENVSNPIIIDQYYCDAHVPCANQTSAVKVENISFRRIKGTSATEEAIKF 537
Query: 1118 LCSAKIPCTGVTMDDVNI 1171
CS +PC G+ ++DV +
Sbjct: 536 ACSDDLPCKGLYLEDVQL 483
Score = 81.7 bits (172), Expect(2) = 3e-033
Identities = 33/64 (51%), Positives = 41/64 (64%)
Frame = +2 / -3
Query: 725 GDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRI 904
GDDCISI +S++ I + CGPGHGISIGSLG+ V D+ V L T NGVRI
Sbjct: 923 GDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRI 744
Query: 905 KAYE 916
K ++
Sbjct: 743 KTWQ 732
>gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032C08 5', mRNA sequence
Length = 698
Score = 120 bits (257), Expect(2) = 1e-031
Identities = 50/114 (43%), Positives = 70/114 (61%)
Frame = +2 / +3
Query: 551 VSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGD 730
V+GIT+ NS H+ C + + D +P +SPNTDGIH+ +S V I ++ + GD
Sbjct: 282 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 461
Query: 731 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTAN 892
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T N
Sbjct: 462 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTXN 623
Score = 37.3 bits (75), Expect(2) = 1e-031
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWS 472
WIE +++ + I GKG +DGQG W+
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWN 176
>gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01023H02 5', mRNA sequence
Length = 611
Score = 130 bits (278), Expect(2) = 1e-031
Identities = 54/122 (44%), Positives = 76/122 (62%)
Frame = +2 / +2
Query: 551 VSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGD 730
V+GIT+ NS H+ C + + D +P +SPNTDGIH+ +S V I ++ + GD
Sbjct: 170 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 349
Query: 731 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKA 910
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T GVRIK
Sbjct: 350 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 529
Query: 911 YE 916
++
Sbjct: 530 WQ 535
Score = 27.6 bits (54), Expect(2) = 1e-031
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2 / +2
Query: 410 VDNLVITGKGKLDGQGPAVWS 472
++ + I GKG +DGQG W+
Sbjct: 2 LNGITIQGKGIIDGQGSVWWN 64
>gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H13 3', mRNA sequence
Length = 937
Score = 121 bits (259), Expect(2) = 2e-031
Identities = 49/100 (49%), Positives = 74/100 (74%)
Frame = +2 / -2
Query: 617 LIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPG 796
LIK +++++P SPNTDGIH+ ++ V I ++ I GDDCISIG G S V+I G+TCGP
Sbjct: 936 LIKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPS 757
Query: 797 HGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
HGISIGSLG + + V++I V++ +K++ +G+RIK ++
Sbjct: 756 HGISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTWQ 637
Score = 35.9 bits (72), Expect(2) = 2e-031
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2 / -2
Query: 941 SKIHYENIKMEDSGYPIIIDMKYCPNKLC 1027
S I++ENI+ME+ IIID YC +K C
Sbjct: 618 SDINFENIQMENVRNCIIIDQYYCLSKAC 532
>gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 644
Score = 135 bits (290), Expect = 6e-031
Identities = 57/143 (39%), Positives = 88/143 (61%)
Frame = +2 / -1
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
K C+ P +L +D + +++G+T+ NS+ H + + + DV V+AP DSPNTD
Sbjct: 452 KSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTD 273
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIH+ S+ V + + IG GDDC+SI G+S + + + CGPG GISIGSLG+ V
Sbjct: 272 GIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMV 93
Query: 848 TDINVKDCTLKKTANGVRIKAYE 916
T + + L++T NG+RIK ++
Sbjct: 92 TKVVLDTAFLRETTNGLRIKTWQ 24
>gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017H09 5', mRNA sequence
Length = 705
Score = 130 bits (278), Expect(2) = 8e-031
Identities = 54/122 (44%), Positives = 76/122 (62%)
Frame = +2 / +3
Query: 551 VSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGD 730
V+GIT+ NS H+ C + + D +P +SPNTDGIH+ +S V I ++ + GD
Sbjct: 84 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 263
Query: 731 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKA 910
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T GVRIK
Sbjct: 264 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 443
Query: 911 YE 916
++
Sbjct: 444 WQ 449
Score = 28.1 bits (55), Expect(2) = 8e-031
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2 / +3
Query: 1109 VNLLCSAKIPCTGVTMDDVNI 1171
V+L CS +PCTG++ + +
Sbjct: 630 VHLACSDNLPCTGISFSAIEL 692
>gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 5', mRNA sequence
Length = 802
Score = 130 bits (279), Expect(2) = 9e-031
Identities = 54/122 (44%), Positives = 76/122 (62%)
Frame = +2 / +3
Query: 551 VSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGD 730
V+GIT+ NS H+ C + + D +P +SPNTDGIH+ +S V I ++ + GD
Sbjct: 27 VTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGD 206
Query: 731 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKA 910
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T GVRIK
Sbjct: 207 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 386
Query: 911 YE 916
++
Sbjct: 387 WQ 392
Score = 27.6 bits (54), Expect(2) = 9e-031
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2 / +3
Query: 1109 VNLLCSAKIPCTGVTMDDVNI 1171
V+L CS +PCTG++ + +
Sbjct: 573 VHLACSDDLPCTGISFSAIEL 635
>gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 527
Score = 132 bits (283), Expect = 5e-030
Identities = 56/143 (39%), Positives = 87/143 (60%)
Frame = +2 / -1
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
K C+ P +L +D + +++G+T+ NS+ H + + + V V+AP DSPNTD
Sbjct: 452 KSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSHVLVSAPEDSPNTD 273
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIH+ S+ V + + IG GDDC+SI G+S + + + CGPG GISIGSLG+ V
Sbjct: 272 GIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMV 93
Query: 848 TDINVKDCTLKKTANGVRIKAYE 916
T + + L++T NG+RIK ++
Sbjct: 92 TKVVLDTAFLRETTNGLRIKTWQ 24
>gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 579
Score = 130 bits (279), Expect = 2e-029
Identities = 56/143 (39%), Positives = 87/143 (60%)
Frame = +2 / -2
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
K C+ P +L +D + +++G+T+ NS+ H + + + DV V+AP DSPNTD
Sbjct: 452 KSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTD 273
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 847
GIH+ S+ V + + IG GDDC+SI G+S + + + GPG GISIGSLG+ V
Sbjct: 272 GIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFYGPGRGISIGSLGKDNSTGMV 93
Query: 848 TDINVKDCTLKKTANGVRIKAYE 916
T + + L++T NG+RIK ++
Sbjct: 92 TKVVLDTAFLRETTNGLRIKTWQ 24
>gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 3', mRNA sequence
Length = 934
Score = 116 bits (249), Expect(2) = 1e-026
Identities = 47/104 (45%), Positives = 66/104 (63%)
Frame = +2 / -2
Query: 605 CKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVT 784
C + + D +P +SPNTDGIH+ +S V I ++ + GDDC+SI G S+V I V
Sbjct: 930 CTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGDDCVSIQTGCSQVYIHNVN 751
Query: 785 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
CGPGHGISIG LGR + V+++ V+D + T GVRIK ++
Sbjct: 750 CGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTWQ 619
Score = 27.6 bits (54), Expect(2) = 1e-026
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2 / -2
Query: 1109 VNLLCSAKIPCTGVTMDDVNI 1171
V+L CS +PCTG++ + +
Sbjct: 438 VHLACSDDLPCTGISFSAIEL 376
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
Length = 143392
Score = 69.3 bits (145), Expect(6) = 1e-023
Identities = 29/70 (41%), Positives = 45/70 (64%)
Frame = +2 / +2
Query: 518 SLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGV 697
+L +D ++ +V G+T+ NS+ H + K + I V+V+APGDSPNTDGIH+ S+ V
Sbjct: 98669 ALTIDSSSSVKVKGLTIKNSQQMHFVISKSASVRISQVSVSAPGDSPNTDGIHITQSTNV 98848
Query: 698 TITNTVIGVG 727
+ + IG G
Sbjct: 98849 VLQDCKIGTG 98878
Score = 47.3 bits (97), Expect(6) = 1e-023
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2 / +2
Query: 725 GDDCISIGPGTSKVNITGVTCGPGHGISIGSL 820
GDDCISI G+S + + + CGPGHG+ + S+
Sbjct: 99014 GDDCISIVNGSSGIKMKRIYCGPGHGVRLSSI 99109
Score = 32.7 bits (65), Expect(6) = 1e-023
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2 / +3
Query: 803 ISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYE 916
+SIGSLG+ V + + + +T NGVRIK ++
Sbjct: 99264 LSIGSLGKDNSTGIVAKVVLDTAFISETTNGVRIKTWQ 99377
Score = 32.7 bits (65), Expect(6) = 1e-023
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2 / +3
Query: 203 KAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTIQV 337
+A +AW +AC ++ + +LV F GPC+ IQV
Sbjct: 98016 QAFVKAWETACATPESVFLVPSEHHYLVNATRFKGPCEDRFVIQV 98150
Score = 32.2 bits (64), Expect(6) = 1e-023
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2 / +1
Query: 947 IHYENIKMEDSGYPIIIDMKYCPNKLCTAN 1036
+ +EN++M++ PIIID YC + N
Sbjct: 99538 VRFENVRMDNVDNPIIIDQFYCDSPASCQN 99627
Score = 29.9 bits (59), Expect(6) = 1e-023
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2 / +2
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWSKN 478
W+E +++ ++ G G +DG G W+ +
Sbjct: 98363 WLEFSKLNGVLFQGNGVIDGSGSKWWASS 98449
>gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides
cDNA clone WS0221_J07 3', mRNA sequence
Length = 722
Score = 67.5 bits (141), Expect(2) = 4e-023
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = +2 / -2
Query: 938 ASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNL 1117
A I +++ M + PI+ID YCP + S V + DVT+++I G+S+T AV
Sbjct: 571 ARNILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKF 392
Query: 1118 LCSAKIPCTGVTMDDVNI 1171
CS PC+G+ ++DV +
Sbjct: 391 DCSKTNPCSGIKLEDVKL 338
Score = 61.6 bits (128), Expect(2) = 4e-023
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +2 / -2
Query: 785 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAY 913
CGPGHGISIGSLG+ E V ++ VK T T NGVRIK +
Sbjct: 721 CGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTENGVRIKTW 593
>gb|CN517286.1|CN517286 GQ0093.B3_N07 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_N07 5', mRNA sequence
Length = 475
Score = 102 bits (217), Expect(2) = 8e-023
Identities = 42/110 (38%), Positives = 65/110 (59%)
Frame = +2 / +3
Query: 488 KKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTD 667
K C+ P ++ + +V + ++ + H+ C ++ ++ VT+P SPNTD
Sbjct: 108 KTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHVAFTNCLRVMTFNLIVTSPAVSPNTD 287
Query: 668 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGS 817
GIH+ S GV I ++V+ GDDCISI +S++ I + CGPGHGISIGS
Sbjct: 288 GIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIXXIACGPGHGISIGS 437
Score = 25.8 bits (50), Expect(2) = 8e-023
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +2 / +3
Query: 392 WIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKK 493
W+ V +L + G G ++G+G W+++ + K
Sbjct: 9 WLYFHGVKHLTVEGGGTVNGRGWLWWAQSCKINK 110
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 629,358,647
Number of Sequences: 369679
Number of extensions: 8772329
Number of successful extensions: 52007
Number of sequences better than 1.0e-020: 25
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 21910821676
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)