TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.2
(562 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT526512.1|DT526512 WS02048.C21_D21 PTxN-IB-N-A-11 Popul... 182 2e-045
gb|CV246021.1|CV246021 WS0111.B21_A11 PT-P-FL-A-2 Populus t... 181 3e-045
gb|CV248344.1|CV248344 WS01120.B21_G03 PT-P-FL-A-2 Populus ... 181 3e-045
gb|DT495408.1|DT495408 WS01120.BR_G03 PT-P-FL-A-2 Populus t... 181 3e-045
gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library... 177 4e-044
gb|AJ780911.1|AJ780911 AJ780911 Populus euphratica leaf 3-6... 138 3e-032
gb|DT517796.1|DT517796 WS02435.B21_F07 PTxD-ICC-N-A-14 Popu... 111 3e-024
gb|CF236403.1|CF236403 PtaJXT2D1D0107 Poplar cDNA library f... 110 7e-024
gb|BP934641.1|BP934641 BP934641 full-length enriched poplar... 110 9e-024
gb|CN522673.1|CN522673 GQ0124.B3_M18 GQ012 Populus trichoca... 108 3e-023
gb|BP931986.1|BP931986 BP931986 full-length enriched poplar... 106 1e-022
>gb|DT526512.1|DT526512 WS02048.C21_D21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_D21 3', mRNA sequence
Length = 932
Score = 182 bits (391), Expect = 2e-045
Identities = 69/89 (77%), Positives = 73/89 (82%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 602 LFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 423
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDW+F TD GY
Sbjct: 422 HHRLLYTKSGNYSSTFTYMDWIFGTDKGY 336
Score = 109 bits (233), Expect = 1e-023
Identities = 53/85 (62%), Positives = 58/85 (68%)
Frame = +1 / +1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N QSM* V+ *FPD VYS R*W*S KS PPY G+K + LHGK**P ASTV TL
Sbjct: 346 SVPNIQSM*VKVDE*FPDLVYSNR*W*S*KSAPPYKGKKLERLHGK**PQCASTVSRTLS 525
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRN 546
T +H V+R GPV A VA PRN
Sbjct: 526 TIHNHKVSRWGPVMAGPIMVAKPRN 600
>gb|CV246021.1|CV246021 WS0111.B21_A11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_A11 3', mRNA sequence
Length = 729
Score = 181 bits (390), Expect = 3e-045
Identities = 69/89 (77%), Positives = 73/89 (82%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 531 LFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 352
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDW+F TD GY
Sbjct: 351 HHRLLYTKSGNYSSTFTYMDWVFGTDKGY 265
Score = 111 bits (236), Expect = 5e-024
Identities = 53/85 (62%), Positives = 58/85 (68%)
Frame = +1 / +2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N QSM* V+ *FPD VYS R*W*S KS PPY G+K + LHGK**P ASTV TL
Sbjct: 275 SVPNTQSM*VKVDE*FPDLVYSNR*W*S*KSAPPYKGKKLERLHGK**PQCASTVSRTLS 454
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRN 546
T +H V+R GPV A VA PRN
Sbjct: 455 TIHNHKVSRWGPVMAGPIMVAKPRN 529
>gb|CV248344.1|CV248344 WS01120.B21_G03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_G03 3', mRNA sequence
Length = 698
Score = 181 bits (390), Expect = 3e-045
Identities = 69/89 (77%), Positives = 73/89 (82%)
Frame = -3 / -3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 567 LFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 388
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDW+F TD GY
Sbjct: 387 HHRLLYTKSGNYSSTFTYMDWVFGTDKGY 301
Score = 111 bits (236), Expect = 5e-024
Identities = 53/85 (62%), Positives = 58/85 (68%)
Frame = +1 / +2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N QSM* V+ *FPD VYS R*W*S KS PPY G+K + LHGK**P ASTV TL
Sbjct: 311 SVPNTQSM*VKVDE*FPDLVYSNR*W*S*KSAPPYKGKKLERLHGK**PQCASTVSRTLS 490
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRN 546
T +H V+R GPV A VA PRN
Sbjct: 491 TIHNHKVSRWGPVMAGPIMVAKPRN 565
>gb|DT495408.1|DT495408 WS01120.BR_G03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_G03 5', mRNA sequence
Length = 904
Score = 181 bits (390), Expect = 3e-045
Identities = 69/89 (77%), Positives = 73/89 (82%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 606 LFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 785
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDW+F TD GY
Sbjct: 786 HHRLLYTKSGNYSSTFTYMDWVFGTDKGY 872
Score = 111 bits (236), Expect = 5e-024
Identities = 53/85 (62%), Positives = 58/85 (68%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N QSM* V+ *FPD VYS R*W*S KS PPY G+K + LHGK**P ASTV TL
Sbjct: 862 SVPNTQSM*VKVDE*FPDLVYSNR*W*S*KSAPPYKGKKLERLHGK**PQCASTVSRTLS 683
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRN 546
T +H V+R GPV A VA PRN
Sbjct: 682 TIHNHKVSRWGPVMAGPIMVAKPRN 608
>gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 559
Score = 177 bits (382), Expect = 4e-044
Identities = 68/89 (76%), Positives = 72/89 (80%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 225 LFLGFATIVGPAITGPHLVTLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 404
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STF YMDW+ TD GY
Sbjct: 405 HHRLLYTKSGNYSSTFTYMDWVXGTDKGY 491
Score = 101 bits (215), Expect = 4e-021
Identities = 50/85 (58%), Positives = 54/85 (63%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM V+ *FPD VYS R*W*S KS PPY G+K + L GK**P ASTV TL
Sbjct: 481 SVPXTQSMYVKVDE*FPDLVYSKR*W*S*KSAPPYKGKKLERLQGK**PQCASTVSRTLS 302
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRN 546
T +H V R GPV A VA PRN
Sbjct: 301 TIHNHKVTRWGPVMAGPTIVAKPRN 227
>gb|AJ780911.1|AJ780911 AJ780911 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900014H10F1, mRNA sequence
Length = 366
Score = 138 bits (296), Expect = 3e-032
Identities = 50/62 (80%), Positives = 54/62 (87%)
Frame = -3 / -2
Query: 467 RVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDN 288
RV TVEAH GYHFPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY STF YMDW+F +D
Sbjct: 362 RVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYLSTFTYMDWVFGSDK 183
Query: 287 GY 282
GY
Sbjct: 182 GY 177
>gb|DT517796.1|DT517796 WS02435.B21_F07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_F07 3', mRNA sequence
Length = 768
Score = 111 bits (238), Expect = 3e-024
Identities = 39/89 (43%), Positives = 54/89 (60%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG + A H+ T WL + R +E HSGY+FPW+P+ ++P YGG+D+HDY
Sbjct: 591 LILGIPSFLGPAMVPGHMITFWLWIALRQIEAIETHSGYNFPWTPTKYIPFYGGADYHDY 412
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 411 HHYVGGQSQSNFASVFTYCDFIYGTDKGY 325
>gb|CF236403.1|CF236403 PtaJXT2D1D0107 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 110 bits (235), Expect = 7e-024
Identities = 39/89 (43%), Positives = 53/89 (59%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG + A H+ T WL + R +E HSGY+FPW+P+ ++P YGG+D+HDY
Sbjct: 194 LILGIPSFLGPAMVPGHMITFWLWIALRQIEAIETHSGYNFPWTPTKYIPFYGGADYHDY 373
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D ++ TD GY
Sbjct: 374 HHYVGGQSQSNFASVFTYCDLIYGTDKGY 460
>gb|BP934641.1|BP934641 BP934641 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-067_N10.r 3', mRNA sequence
Length = 669
Score = 110 bits (234), Expect = 9e-024
Identities = 38/87 (43%), Positives = 53/87 (60%)
Frame = -3 / -2
Query: 542 LGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHH 363
LG + A H+ T WL + R +E HSGY+FPW+P+ ++P YGG+D+HDYHH
Sbjct: 632 LGIPSFLGPAMVPGHMITFWLWIALRQIEAIETHSGYNFPWTPTKYIPFYGGADYHDYHH 453
Query: 362 RVLYTKSGNYASTFVYMDWLFRTDNGY 282
V N+AS F Y D+++ TD GY
Sbjct: 452 YVGGQSQSNFASVFTYCDFIYGTDKGY 372
>gb|CN522673.1|CN522673 GQ0124.B3_M18 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_M18 5', mRNA sequence
Length = 438
Score = 108 bits (230), Expect = 3e-023
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG + A H+ T WL + R +E HSGY FPW+P+ ++P YGG+D+HDY
Sbjct: 170 LILGIPSFLXXAMVPGHMITFWLWIALRQXEAIETHSGYDFPWTPTKYIPFYGGADYHDY 349
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS Y D+++ TD GY
Sbjct: 350 HHYVGGQSQSNFASVXTYCDFIYGTDKGY 436
>gb|BP931986.1|BP931986 BP931986 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_G20.r 3', mRNA sequence
Length = 601
Score = 106 bits (226), Expect = 1e-022
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = -3 / -2
Query: 500 HLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTF 321
H+ T W + R +E HSGY+FPW+P+ ++P YGG+D+HDYHH V N+AS F
Sbjct: 582 HMITFWFWIALRQIEAIETHSGYNFPWTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVF 403
Query: 320 VYMDWLFRTDNGY 282
Y D+++ TD GY
Sbjct: 402 TYCDFIYGTDKGY 364
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 233,691,862
Number of Sequences: 369679
Number of extensions: 2976647
Number of successful extensions: 55324
Number of sequences better than 1.0e-020: 14
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6608149965
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)