TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN549214.1|CN549214 GQ0242.B3_A02 GQ024 Populus trichoca... 255 2e-067
gb|CV233335.1|CV233335 WS0121.B21_P19 PT-GT-FL-A-3 Populus ... 255 2e-067
gb|CV235748.1|CV235748 WS01221.B21_G24 PT-GT-FL-A-3 Populus... 255 2e-067
gb|DN487240.1|DN487240 Q021B05.3pR Populus dormant bud cDNA... 253 7e-067
gb|DT485561.1|DT485561 WS02528.B21_I22 PT-MB-N-A-15 Populus... 253 1e-066
gb|DT520008.1|DT520008 WS02446.B21.1_F02 PTxD-ICC-N-A-14 Po... 251 4e-066
gb|CV233514.1|CV233514 WS01211.B21_E21 PT-GT-FL-A-3 Populus... 250 7e-066
gb|CV233728.1|CV233728 WS01212.B21_C12 PT-GT-FL-A-3 Populus... 248 2e-065
gb|CF233488.1|CF233488 PtaJXO0024C10C1006 Poplar cDNA libra... 237 4e-062
gb|BP936849.1|BP936849 BP936849 full-length enriched poplar... 234 5e-061
gb|CV273973.1|CV273973 WS01712.B21_M19 PTxD-NR-A-8 Populus ... 184 5e-046
gb|AJ776064.1|AJ776064 AJ776064 Populus euphratica root 3-6... 135 3e-031
gb|CA823301.1|CA823301 R23G03 two-month-old roots from clon... 104 5e-022
>gb|CN549214.1|CN549214 GQ0242.B3_A02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_A02 5', mRNA sequence
Length = 675
Score = 255 bits (551), Expect = 2e-067
Identities = 102/132 (77%), Positives = 118/132 (89%)
Frame = +2 / +3
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEESHTVEEFL AFGY GL+WKDHVVIDK
Sbjct: 93 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLDVAFGYVGLNWKDHVVIDK 272
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
+YFRPAEVD+LKGD++K RKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG+ D +
Sbjct: 273 RYFRPAEVDNLKGDSSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGYMDAQ 452
Query: 365 QQP*KHHSCFLL 400
QQP* S LL
Sbjct: 453 QQP*TDTSGALL 488
Score = 163 bits (350), Expect = 1e-039
Identities = 76/120 (63%), Positives = 82/120 (68%)
Frame = -3 / -3
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PASTRTFS LA NPTLGF STFL L+ SP +LSTSAG
Sbjct: 460 GCCWASI*PASTRTFSLLAKSISSSTIIFTNCSNPTLGFQPSTFLVLLESPFKLSTSAGL 281
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY LS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 280 KYLLSITT*SFQFNPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*SPAKPQS 101
>gb|CV233335.1|CV233335 WS0121.B21_P19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0121_P19 3', mRNA sequence
Length = 677
Score = 255 bits (551), Expect = 2e-067
Identities = 102/132 (77%), Positives = 118/132 (89%)
Frame = +2 / -1
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEESHTVEEFL AFGY GL+WKDHVVIDK
Sbjct: 593 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLDVAFGYVGLNWKDHVVIDK 414
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
+YFRPAEVD+LKGD++K RKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG+ D +
Sbjct: 413 RYFRPAEVDNLKGDSSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGYMDAQ 234
Query: 365 QQP*KHHSCFLL 400
QQP* S LL
Sbjct: 233 QQP*TDTSGALL 198
Score = 163 bits (350), Expect = 1e-039
Identities = 76/120 (63%), Positives = 82/120 (68%)
Frame = -3 / +1
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PASTRTFS LA NPTLGF STFL L+ SP +LSTSAG
Sbjct: 226 GCCWASI*PASTRTFSLLAKSISSSTIIFTNCSNPTLGFQPSTFLVLLESPFKLSTSAGL 405
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY LS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 406 KYLLSITT*SFQFNPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*SPAKPQS 585
>gb|CV235748.1|CV235748 WS01221.B21_G24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_G24 3', mRNA sequence
Length = 609
Score = 255 bits (551), Expect = 2e-067
Identities = 102/132 (77%), Positives = 118/132 (89%)
Frame = +2 / -1
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEESHTVEEFL AFGY GL+WKDHVVIDK
Sbjct: 597 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLDVAFGYVGLNWKDHVVIDK 418
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
+YFRPAEVD+LKGD++K RKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG+ D +
Sbjct: 417 RYFRPAEVDNLKGDSSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGYMDAQ 238
Query: 365 QQP*KHHSCFLL 400
QQP* S LL
Sbjct: 237 QQP*TDTSGALL 202
Score = 163 bits (350), Expect = 1e-039
Identities = 76/120 (63%), Positives = 82/120 (68%)
Frame = -3 / +2
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PASTRTFS LA NPTLGF STFL L+ SP +LSTSAG
Sbjct: 230 GCCWASI*PASTRTFSLLAKSISSSTIIFTNCSNPTLGFQPSTFLVLLESPFKLSTSAGL 409
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY LS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 410 KYLLSITT*SFQFNPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*SPAKPQS 589
>gb|DN487240.1|DN487240 Q021B05.3pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q021B05 3', mRNA sequence
Length = 525
Score = 253 bits (547), Expect = 7e-067
Identities = 98/124 (79%), Positives = 117/124 (94%)
Frame = +2 / -3
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEESHTVEEFL+ AFGY G++WKDHVVIDK
Sbjct: 439 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGMNWKDHVVIDK 260
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
KYFRPAEVD+LKGD++KARKVL WKPKVGF++LV+MMVD D++LAK+EKVLVDAG+ + +
Sbjct: 259 KYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVKMMVDEDVDLAKREKVLVDAGYINAQ 80
Query: 365 QQP* 376
QQP*
Sbjct: 79 QQP* 68
Score = 164 bits (352), Expect = 6e-040
Identities = 77/120 (64%), Positives = 83/120 (69%)
Frame = -3 / +3
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC PASTRTFS LA NPTLGF STFLAL+ SP +LSTSAG
Sbjct: 72 GCC*ALM*PASTRTFSLLAKSTSSSTIIFTNCSNPTLGFQPSTFLALLESPFKLSTSAGL 251
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KYFLS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 252 KYFLSITT*SFQFIPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*SPAKPQS 431
>gb|DT485561.1|DT485561 WS02528.B21_I22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_I22 3', mRNA sequence
Length = 869
Score = 253 bits (546), Expect = 1e-066
Identities = 98/124 (79%), Positives = 116/124 (93%)
Frame = +2 / -1
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEESHTVEEFL+ AFGY G++WKDHVVIDK
Sbjct: 536 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGMNWKDHVVIDK 357
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
KYFRPAEVD+LKGD++KARKVL WKPKVGF++LV MMVD D++LAK+EKVLVDAG+ + +
Sbjct: 356 KYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVRMMVDEDVDLAKREKVLVDAGYINAQ 177
Query: 365 QQP* 376
QQP*
Sbjct: 176 QQP* 165
Score = 164 bits (352), Expect = 6e-040
Identities = 77/120 (64%), Positives = 83/120 (69%)
Frame = -3 / +1
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC PASTRTFS LA NPTLGF STFLAL+ SP +LSTSAG
Sbjct: 169 GCC*ALM*PASTRTFSLLAKSTSSSTIILTNCSNPTLGFQPSTFLALLESPFKLSTSAGL 348
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KYFLS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 349 KYFLSITT*SFQFIPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*SPAKPQS 528
>gb|DT520008.1|DT520008 WS02446.B21.1_F02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_F02 3', mRNA sequence
Length = 780
Score = 251 bits (542), Expect = 4e-066
Identities = 97/124 (78%), Positives = 115/124 (92%)
Frame = +2 / -3
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEESHTVEEFL+ AFGY G++WKDHVVIDK
Sbjct: 580 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGYVGMNWKDHVVIDK 401
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
KYFRPAEVD+LKGD++KARKVL WKPKVGF++LV MMVD D++LAK+EKV VDAG+ + +
Sbjct: 400 KYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVRMMVDEDVDLAKREKVFVDAGYINAQ 221
Query: 365 QQP* 376
QQP*
Sbjct: 220 QQP* 209
Score = 162 bits (349), Expect = 1e-039
Identities = 76/120 (63%), Positives = 83/120 (69%)
Frame = -3 / +3
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC PAST+TFS LA NPTLGF STFLAL+ SP +LSTSAG
Sbjct: 213 GCC*ALM*PASTKTFSLLAKSTSSSTIILTNCSNPTLGFQPSTFLALLESPFKLSTSAGL 392
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KYFLS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 393 KYFLSITT*SFQFIPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*SPAKPQS 572
>gb|CV233514.1|CV233514 WS01211.B21_E21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_E21 3', mRNA sequence
Length = 653
Score = 250 bits (540), Expect = 7e-066
Identities = 97/123 (78%), Positives = 114/123 (92%)
Frame = +2 / -2
Query: 8 ARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDKK 187
+RDWGFAGDYVEAMW+MLQQE+P DYVV TEESHTVEEFL+ AFGY G++WKDHVVIDKK
Sbjct: 652 SRDWGFAGDYVEAMWMMLQQEKPDDYVVETEESHTVEEFLEVAFGYVGMNWKDHVVIDKK 473
Query: 188 YFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPKQ 367
YFRPAEVD+LKGD++KARKVL WKPKVGF++LV MMVD D++LAK+EKVLVDAG+ + +Q
Sbjct: 472 YFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVRMMVDEDVDLAKREKVLVDAGYINAQQ 293
Query: 368 QP* 376
QP*
Sbjct: 292 QP* 284
Score = 162 bits (349), Expect = 1e-039
Identities = 76/120 (63%), Positives = 83/120 (69%)
Frame = -3 / +3
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC PASTRTFS LA NPTLGF STFLAL+ SP +LSTSAG
Sbjct: 288 GCC*ALM*PASTRTFSLLAKSTSSSTIILTNCSNPTLGFQPSTFLALLESPFKLSTSAGL 467
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KYFLS+TT*SFQ P P A +NSSTV DSSV+TT*S G SCC++ HIAST*SPA PQS
Sbjct: 468 KYFLSITT*SFQFIPTYPNATSKNSSTVCDSSVSTT*SSGFSCCNIIHIAST*SPAKPQS 647
>gb|CV233728.1|CV233728 WS01212.B21_C12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01212_C12 3', mRNA sequence
Length = 857
Score = 248 bits (536), Expect = 2e-065
Identities = 97/124 (78%), Positives = 112/124 (90%)
Frame = +2 / -1
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++RDWGFAGDYVEAMW+MLQQE+P DYVVATEE HTVEEFL AFGY GL+WKDHVVIDK
Sbjct: 605 ASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEELHTVEEFLDVAFGYVGLNWKDHVVIDK 426
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPK 364
+YFRPAEVD+LKGD +K RKVL WKPKVGF++LV+MMVD DI+LAK+EKV VDAG+ D +
Sbjct: 425 RYFRPAEVDNLKGDLSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVFVDAGYMDAQ 246
Query: 365 QQP* 376
QQP*
Sbjct: 245 QQP* 234
Score = 159 bits (342), Expect = 1e-038
Identities = 74/120 (61%), Positives = 82/120 (68%)
Frame = -3 / +1
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PAST+TFS LA NPTLGF STFL L+ SP +LSTSAG
Sbjct: 238 GCCWASI*PASTKTFSLLAKSISSSTIIFTNCSNPTLGFQPSTFLVLLKSPFKLSTSAGL 417
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQS 13
KY LS+TT*SFQ P P A +NSSTV +SSVATT*S G SCC++ HIAST*SPA PQS
Sbjct: 418 KYLLSITT*SFQFNPTYPNATSKNSSTVCNSSVATT*SSGFSCCNIIHIAST*SPAKPQS 597
>gb|CF233488.1|CF233488 PtaJXO0024C10C1006 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 387
Score = 237 bits (513), Expect = 4e-062
Identities = 93/116 (80%), Positives = 107/116 (92%)
Frame = +2 / +1
Query: 5 SARDWGFAGDYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDK 184
++R WGFAG YVEAMW+MLQQE+P DYVVATEESHTVEEFL AFGY GL+WKDHVVIDK
Sbjct: 28 ASRXWGFAGXYVEAMWMMLQQEKPDDYVVATEESHTVEEFLDVAFGYVGLNWKDHVVIDK 207
Query: 185 KYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGF 352
+YFRPAEVD+LKGD+ KARKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG+
Sbjct: 208 RYFRPAEVDNLKGDSIKARKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGY 375
Score = 155 bits (333), Expect = 2e-037
Identities = 72/111 (64%), Positives = 77/111 (69%)
Frame = -3 / -2
Query: 348 PASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGRKYFLSMTT 169
PASTRTFS LA NPTLGF STFLAL+ SP +LSTSAG KY LS TT
Sbjct: 371 PASTRTFSLLAKSISSSTIIFTSCSNPTLGFQPSTFLALIESPFKLSTSAGLKYLLSXTT 192
Query: 168 *SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*SPANPQ 16
*SFQ P PKA +NSSTV DSSVATT*S G SCC++ HIAST* PA PQ
Sbjct: 191 *SFQFNPTYPKATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*XPAKPQ 39
>gb|BP936849.1|BP936849 BP936849 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-097_H16.r 3', mRNA sequence
Length = 585
Score = 234 bits (505), Expect = 5e-061
Identities = 95/123 (77%), Positives = 109/123 (88%)
Frame = +2 / -2
Query: 32 DYVEAMWLMLQQEQPGDYVVATEESHTVEEFLQAAFGYAGLSWKDHVVIDKKYFRPAEVD 211
DYVEAMW+MLQQE+P DYVVATEESHTVEEFL AFGY GL+WKDHVVIDK+YFRPAEVD
Sbjct: 584 DYVEAMWMMLQQEKPDDYVVATEESHTVEEFLDVAFGYVGLNWKDHVVIDKRYFRPAEVD 405
Query: 212 SLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPKQQP*KHHSC 391
+LKGD++K RKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG+ D +QQP* S
Sbjct: 404 NLKGDSSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGYMDAQQQP*TDTSG 225
Query: 392 FLL 400
LL
Sbjct: 224 ALL 216
Score = 150 bits (323), Expect = 6e-036
Identities = 71/114 (62%), Positives = 77/114 (67%)
Frame = -3 / +1
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC S PASTRTFS LA NPTLGF STFL L+ SP +LSTSAG
Sbjct: 244 GCCWASI*PASTRTFSLLAKSISSSTIIFTNCSNPTLGFQPSTFLVLLESPFKLSTSAGL 423
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSSVATT*SPGCSCCSMSHIAST*S 31
KY LS+TT*SFQ P P A +NSSTV DSSVATT*S G SCC++ HIAST*S
Sbjct: 424 KYLLSITT*SFQFNPTYPNATSKNSSTVCDSSVATT*SSGFSCCNIIHIAST*S 585
>gb|CV273973.1|CV273973 WS01712.B21_M19 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_M19 3', mRNA sequence
Length = 427
Score = 184 bits (396), Expect = 5e-046
Identities = 72/93 (77%), Positives = 87/93 (93%)
Frame = +2 / -2
Query: 98 EESHTVEEFLQAAFGYAGLSWKDHVVIDKKYFRPAEVDSLKGDATKARKVLKWKPKVGFQ 277
EESHTVEEFL+ AFGY G++WKDHVVIDKKYFRPAEVD+LKGD++KARKVL WKPKVGF+
Sbjct: 426 EESHTVEEFLEVAFGYVGMNWKDHVVIDKKYFRPAEVDNLKGDSSKARKVLGWKPKVGFE 247
Query: 278 ELVEMMVDHDIELAKKEKVLVDAGFRDPKQQP* 376
+LV+MMVD D++LAK+EKVLVDAG+ + +QQP*
Sbjct: 246 QLVKMMVDEDVDLAKREKVLVDAGYINAQQQP* 148
Score = 116 bits (247), Expect = 2e-025
Identities = 55/92 (59%), Positives = 59/92 (64%)
Frame = -3 / +2
Query: 372 GCCLGSRNPASTRTFSFLAXXXXXXXXXXXXSWNPTLGFHLSTFLALVASPLRLSTSAGR 193
GCC PASTRTFS LA NPTLGF STFLAL+ SP +LSTSAG
Sbjct: 152 GCC*ALM*PASTRTFSLLAKSTSSSTIIFTNCSNPTLGFQPSTFLALLESPFKLSTSAGL 331
Query: 192 KYFLSMTT*SFQLRPA*PKAACRNSSTVWDSS 97
KYFLS+TT*SFQ P P A +NSSTV DSS
Sbjct: 332 KYFLSITT*SFQFIPTYPNATSKNSSTVCDSS 427
>gb|AJ776064.1|AJ776064 AJ776064 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400008G11F1, mRNA sequence
Length = 373
Score = 135 bits (289), Expect = 3e-031
Identities = 57/77 (74%), Positives = 68/77 (88%)
Frame = +2 / +2
Query: 170 VVIDKKYFRPAEVDSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAG 349
VVIDK+YFRPAEVD+LKGD++KARKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG
Sbjct: 2 VVIDKRYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAG 181
Query: 350 FRDPKQQP*KHHSCFLL 400
+ D +QQP* S LL
Sbjct: 182 YMDAQQQP*TDTSGALL 232
>gb|CA823301.1|CA823301 R23G03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 431
Score = 104 bits (222), Expect = 5e-022
Identities = 44/64 (68%), Positives = 54/64 (84%)
Frame = +2 / +1
Query: 209 DSLKGDATKARKVLKWKPKVGFQELVEMMVDHDIELAKKEKVLVDAGFRDPKQQP*KHHS 388
D+LKGD++K RKVL WKPKVGF++LV+MMVD DI+LAK+EKVLVDAG+ D +QQP* S
Sbjct: 10 DNLKGDSSKTRKVLGWKPKVGFEQLVKMMVDEDIDLAKREKVLVDAGYMDAQQQP*TDTS 189
Query: 389 CFLL 400
LL
Sbjct: 190 GALL 201
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 289,669,551
Number of Sequences: 369679
Number of extensions: 3698286
Number of successful extensions: 50588
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7636084404
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)