TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521918.2.1
         (417 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU875966.1|BU875966  V013G11 Populus flower cDNA library ...   119   8e-027
gb|BU876293.1|BU876293  V018H05 Populus flower cDNA library ...   119   8e-027
gb|CK113925.1|CK113925  V004D07 Populus male catkins cDNA li...   119   8e-027
gb|DN501557.1|DN501557  V004D07.5pR Populus male catkins cDN...   119   8e-027
gb|DT488943.1|DT488943  WS02537.B21_N23 PT-MB-N-A-15 Populus...   119   8e-027
gb|DT489101.1|DT489101  WS02538.B21_E19 PT-MB-N-A-15 Populus...   119   8e-027
gb|DN491581.1|DN491581  V004D07.3pR Populus male catkins cDN...   116   7e-026

>gb|BU875966.1|BU875966 V013G11 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 633

 Score =  119 bits (255), Expect = 8e-027
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2 / +3

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+SG KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 447 VFRISGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 626

            
Query: 185 * 187
           *
Sbjct: 627 * 629



>gb|BU876293.1|BU876293 V018H05 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 698

 Score =  119 bits (255), Expect = 8e-027
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2 / +1

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+SG KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 442 VFRISGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 621

            
Query: 185 * 187
           *
Sbjct: 622 * 624



>gb|CK113925.1|CK113925 V004D07 Populus male catkins cDNA library Populus trichocarpa cDNA
           clone V004D07 5', mRNA sequence
          Length = 754

 Score =  119 bits (255), Expect = 8e-027
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2 / +3

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+SG KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 462 VFRISGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 641

            
Query: 185 * 187
           *
Sbjct: 642 * 644



>gb|DN501557.1|DN501557 V004D07.5pR Populus male catkins cDNA library Populus trichocarpa
           cDNA clone V004D07 5', mRNA sequence
          Length = 725

 Score =  119 bits (255), Expect = 8e-027
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2 / +3

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+SG KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 462 VFRISGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 641

            
Query: 185 * 187
           *
Sbjct: 642 * 644



>gb|DT488943.1|DT488943 WS02537.B21_N23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02537_N23 3', mRNA sequence
          Length = 727

 Score =  119 bits (255), Expect = 8e-027
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2 / -2

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+SG KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 273 VFRISGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 94

            
Query: 185 * 187
           *
Sbjct: 93  * 91



>gb|DT489101.1|DT489101 WS02538.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02538_E19 3', mRNA sequence
          Length = 759

 Score =  119 bits (255), Expect = 8e-027
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +2 / -2

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+SG KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 314 VFRISGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 135

            
Query: 185 * 187
           *
Sbjct: 134 * 132



>gb|DN491581.1|DN491581 V004D07.3pR Populus male catkins cDNA library Populus trichocarpa
           cDNA clone V004D07 3', mRNA sequence
          Length = 677

 Score =  116 bits (248), Expect = 7e-026
 Identities = 43/60 (71%), Positives = 52/60 (86%)
 Frame = +2 / -2

                                                                       
Query: 5   VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
           VFR+ G KF+KLN GTWHAGPLFK + +DFYNLELS+TNVVDHTTH+ K+ DGI FV++D
Sbjct: 265 VFRIFGSKFIKLNIGTWHAGPLFKPETMDFYNLELSDTNVVDHTTHNLKQQDGIVFVIDD 86



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 221,703,154
Number of Sequences: 369679
Number of extensions: 3062586
Number of successful extensions: 93823
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 4340066544
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)