TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU832276.1|BU832276 T031F10 Populus apical shoot cDNA li... 104 5e-022
gb|CK092908.1|CK092908 G099P67.3pR Populus tension wood cDN... 103 1e-021
gb|CK103007.1|CK103007 G099P67.5pR Populus tension wood cDN... 103 1e-021
gb|AJ777809.1|AJ777809 AJ777809 Populus euphratica root 3-6... 101 3e-021
gb|DN484355.1|DN484355 G130P50.3pR Populus tension wood cDN... 101 3e-021
gb|CA824413.1|CA824413 R41F09 two-month-old roots from clon... 100 5e-021
gb|CN518345.1|CN518345 GQ0092.B3_I05 GQ009 Populus trichoca... 100 5e-021
gb|CV232907.1|CV232907 WS0199.B21_A19 PT-DX-N-A-10 Populus ... 100 5e-021
gb|CV272489.1|CV272489 WS0157.B21_M22 PTxN-IB-A-6 Populus t... 100 5e-021
gb|CV274281.1|CV274281 WS0172.B21_M11 PTxD-NR-A-8 Populus t... 100 5e-021
gb|DT518576.1|DT518576 WS02438.B21_J08 PTxD-ICC-N-A-14 Popu... 100 5e-021
>gb|BU832276.1|BU832276 T031F10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 719
Score = 104 bits (221), Expect = 5e-022
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3 / +2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ VPDNAL+CG L + QKP
Sbjct: 485 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEDTNKTELPVPDNALFCGALSKFQKP 664
Query: 183 Q 185
Q
Sbjct: 665 Q 667
>gb|CK092908.1|CK092908 G099P67.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G099P67 3', mRNA sequence
Length = 553
Score = 103 bits (219), Expect = 1e-021
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ VPDNAL+CG L + QKP
Sbjct: 548 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEDTNKTELPVPDNALFCGALGKFQKP 369
Query: 183 Q 185
Q
Sbjct: 368 Q 366
>gb|CK103007.1|CK103007 G099P67.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G099P67 5', mRNA sequence
Length = 534
Score = 103 bits (219), Expect = 1e-021
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3 / +3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ VPDNAL+CG L + QKP
Sbjct: 6 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEDTNKTELPVPDNALFCGALGKFQKP 185
Query: 183 Q 185
Q
Sbjct: 186 Q 188
>gb|AJ777809.1|AJ777809 AJ777809 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035D05F1, mRNA sequence
Length = 736
Score = 101 bits (215), Expect = 3e-021
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 412 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEKTNKTELPIPDNALFCGELSKLQKP 591
Query: 183 Q 185
+
Sbjct: 592 E 594
>gb|DN484355.1|DN484355 G130P50.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G130P50 3', mRNA sequence
Length = 685
Score = 101 bits (215), Expect = 3e-021
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 497 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEETNKTELPIPDNALFCGELSKLQKP 318
Query: 183 Q 185
+
Sbjct: 317 E 315
>gb|CA824413.1|CA824413 R41F09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 601
Score = 100 bits (214), Expect = 5e-021
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE Y+++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 355 ILVSLDNVGVWNLRTENLDSWYLGQETYIRIVNPEETNKTELPIPDNALFCGELSKLQKP 534
Query: 183 Q 185
+
Sbjct: 535 E 537
>gb|CN518345.1|CN518345 GQ0092.B3_I05 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_I05 5', mRNA sequence
Length = 495
Score = 100 bits (214), Expect = 5e-021
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +3 / +3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 18 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEETNKTELPIPDNALFCGALGKFQKP 197
Query: 183 Q 185
+
Sbjct: 198 E 200
>gb|CV232907.1|CV232907 WS0199.B21_A19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_A19 3', mRNA sequence
Length = 577
Score = 100 bits (214), Expect = 5e-021
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +3 / -2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE Y+++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 540 ILVSLDNVGVWNLRTENLDSWYLGQETYIRIVNPEETNKTELPIPDNALFCGELSKLQKP 361
Query: 183 Q 185
+
Sbjct: 360 E 358
>gb|CV272489.1|CV272489 WS0157.B21_M22 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_M22 3', mRNA sequence
Length = 652
Score = 100 bits (214), Expect = 5e-021
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE Y+++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 541 ILVSLDNVGVWNLRTENLDSWYLGQETYIRIVNPEETNKTELPIPDNALFCGELSKLQKP 362
Query: 183 Q 185
+
Sbjct: 361 E 359
>gb|CV274281.1|CV274281 WS0172.B21_M11 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_M11 3', mRNA sequence
Length = 903
Score = 100 bits (214), Expect = 5e-021
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE Y+++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 543 ILVSLDNVGVWNLRTENLDSWYLGQETYIRIVNPEETNKTELPIPDNALFCGELSKLQKP 364
Query: 183 Q 185
+
Sbjct: 363 E 361
>gb|DT518576.1|DT518576 WS02438.B21_J08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_J08 3', mRNA sequence
Length = 860
Score = 100 bits (214), Expect = 5e-021
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
+LVSLDNVGVWNLR E LD WY GQE YV++ +P N TE+ +PDNAL+CG L + QKP
Sbjct: 569 ILVSLDNVGVWNLRTENLDSWYLGQETYVRIVNPEETNKTELPIPDNALFCGALGKFQKP 390
Query: 183 Q 185
+
Sbjct: 389 E 387
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 256,975,289
Number of Sequences: 369679
Number of extensions: 3508898
Number of successful extensions: 68924
Number of sequences better than 1.0e-020: 12
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 5776012562
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)