TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT517796.1|DT517796 WS02435.B21_F07 PTxD-ICC-N-A-14 Popu... 294 3e-079
gb|CF236403.1|CF236403 PtaJXT2D1D0107 Poplar cDNA library f... 292 2e-078
gb|BP934641.1|BP934641 BP934641 full-length enriched poplar... 264 4e-070
gb|CN522673.1|CN522673 GQ0124.B3_M18 GQ012 Populus trichoca... 261 4e-069
gb|BP931986.1|BP931986 BP931986 full-length enriched poplar... 218 3e-056
gb|BU866140.1|BU866140 S063B06 Populus imbibed seed cDNA li... 181 4e-045
gb|DT526512.1|DT526512 WS02048.C21_D21 PTxN-IB-N-A-11 Popul... 163 1e-039
gb|CV246021.1|CV246021 WS0111.B21_A11 PT-P-FL-A-2 Populus t... 162 2e-039
gb|CV248344.1|CV248344 WS01120.B21_G03 PT-P-FL-A-2 Populus ... 162 2e-039
gb|DT495408.1|DT495408 WS01120.BR_G03 PT-P-FL-A-2 Populus t... 162 2e-039
gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library... 161 4e-039
gb|BP931647.1|BP931647 BP931647 full-length enriched poplar... 158 4e-038
gb|BU864869.1|BU864869 S046A03 Populus imbibed seed cDNA li... 147 6e-035
gb|BU861358.1|BU861358 S001B09 Populus imbibed seed cDNA li... 144 4e-034
gb|CN520588.1|CN520588 GQ0105.B3_E10 GQ010 Populus trichoca... 142 3e-033
gb|CX658359.1|CX658359 PO01034B11 Poplar SC cDNA library Po... 139 1e-032
gb|DV464349.1|DV464349 MTUNUL1.P26.D03 NUL Populus fremonti... 129 1e-029
gb|DN489710.1|DN489710 T072G12.3pR Populus shoot meristem c... 116 2e-028
gb|DN488487.1|DN488487 S001B09.3pR Populus imbibed seed cDN... 122 2e-027
gb|BP934563.1|BP934563 BP934563 full-length enriched poplar... 108 3e-023
gb|BU835353.1|BU835353 T072G12 Populus apical shoot cDNA li... 101 5e-021
>gb|DT517796.1|DT517796 WS02435.B21_F07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_F07 3', mRNA sequence
Length = 768
Score = 294 bits (637), Expect = 3e-079
Identities = 110/134 (82%), Positives = 123/134 (91%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIGFAAPYAHWAE+LILGIPSF+GPA+VPGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 654 VHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMVPGHMITFWLWIALRQIEAIETHSGY 475
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
+FP+TPTKYIPFYGGA+YHDYHHYVGGQSQSNFASVFTYCD++YGTDKGYRF K L KL
Sbjct: 474 NFPWTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDFIYGTDKGYRFQKKLLRKL 295
Query: 362 KDLGHNDGEKGDGS 403
K+ N GE+ GS
Sbjct: 294 KEGVENGGEQNGGS 253
Score = 181 bits (389), Expect = 5e-045
Identities = 84/112 (75%), Positives = 90/112 (80%)
Frame = -2 / +2
Query: 336 NL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIA 157
N *PLSVP SQ*V T+AKLLWL PPT** *SW SAPP*NGIYFVGV GK PLCVSIA
Sbjct: 320 NR*PLSVP*IKSQ*VNTDAKLLWLCPPT**W*SW*SAPP*NGIYFVGVQGKL*PLCVSIA 499
Query: 156 ST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
S R I +QNVIM PGT+AGP K+G+P I SAQCAYGAANP+GAV SW*T
Sbjct: 500 SICRKAIHNQNVIMCPGTIAGPRKDGIPRIKISAQCAYGAANPMGAVYSW*T 655
Score = 116 bits (247), Expect = 2e-025
Identities = 52/129 (40%), Positives = 79/129 (61%)
Frame = -1 / +1
Query: 388 LAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWN 209
L I + QL ++ + VS+I ITVSE+ K+ALAL+S IMM++MV C++I+WN
Sbjct: 268 LTTIFHSLFQLPKKLLLKPIALVSSINKITVSEH*CKVALALSSNIMMVIMVVCTTIKWN 447
Query: 208 ILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCES 29
I C ++ A+ L+ L+L NP+P+CDHV N+ W + +++ Q+ SPVCIW +
Sbjct: 448 IFCGSPGKVVTAVRLNCLNLP*SNPQPKCDHVPRNHCWTKKRWNSKDQNFSPVCIWGSKP 627
Query: 28 YWRSELMVN 2
MVN
Sbjct: 628 NGSCIFMVN 654
>gb|CF236403.1|CF236403 PtaJXT2D1D0107 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 292 bits (631), Expect = 2e-078
Identities = 110/134 (82%), Positives = 121/134 (90%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIGFAAPYAHWAE+LILGIPSF+GPA+VPGHMITFWLWI LRQ+EAIETHSG+
Sbjct: 131 VHHEYTAPIGFAAPYAHWAEILILGIPSFLGPAMVPGHMITFWLWIALRQIEAIETHSGY 310
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKL 361
+FP+TPTKYIPFYGGA+YHDYHHYVGGQSQSNFASVFTYCD +YGTDKGYRF K L KL
Sbjct: 311 NFPWTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDLIYGTDKGYRFQKKLLRKL 490
Query: 362 KDLGHNDGEKGDGS 403
K+ N GE GS
Sbjct: 491 KEGVENGGEXNGGS 532
Score = 181 bits (389), Expect = 5e-045
Identities = 84/112 (75%), Positives = 90/112 (80%)
Frame = -2 / -2
Query: 336 NL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIA 157
N *PLSVP SQ*V T+AKLLWL PPT** *SW SAPP*NGIYFVGV GK PLCVSIA
Sbjct: 465 NR*PLSVP*IRSQ*VNTDAKLLWLCPPT**W*SW*SAPP*NGIYFVGVQGKL*PLCVSIA 286
Query: 156 ST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
S R I +QNVIM PGT+AGP K+G+P I SAQCAYGAANP+GAV SW*T
Sbjct: 285 SICRKAIHNQNVIMCPGTIAGPRKDGIPRIKISAQCAYGAANPMGAVYSW*T 130
Score = 108 bits (230), Expect = 4e-023
Identities = 50/129 (38%), Positives = 77/129 (59%)
Frame = -1 / -1
Query: 388 LAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWN 209
L I + QL ++ + VS+I ITVS++ K+ALAL+S IMM++MV C++I+WN
Sbjct: 517 LTTIFHSLFQLPKKLLLKPIALVSSINKITVSKH*CKVALALSSNIMMVIMVVCTTIKWN 338
Query: 208 ILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIWSCES 29
I C ++ A+ L+ L+L NP+P+CDHV N+ W + +++ Q SPV IW +
Sbjct: 337 IFCGSPGKVVTAVRLNCLNLP*SNPQPKCDHVPRNHRWTKKRWNSKDQDFSPVRIWGSKP 158
Query: 28 YWRSELMVN 2
MVN
Sbjct: 157 NGSCIFMVN 131
>gb|BP934641.1|BP934641 BP934641 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-067_N10.r 3', mRNA sequence
Length = 669
Score = 264 bits (571), Expect = 4e-070
Identities = 99/123 (80%), Positives = 111/123 (90%)
Frame = +2 / -2
Query: 35 AAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIP 214
AAPYAHWAE+ ILGIPSF+GPA+VPGHMITFWLWI LRQ+EAIETHSG++FP+TPTKYIP
Sbjct: 668 AAPYAHWAEIWILGIPSFLGPAMVPGHMITFWLWIALRQIEAIETHSGYNFPWTPTKYIP 489
Query: 215 FYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKDLGHNDGEKG 394
FYGGA+YHDYHHYVGGQSQSNFASVFTYCD++YGTDKGYRF K L KLK+ N GE+
Sbjct: 488 FYGGADYHDYHHYVGGQSQSNFASVFTYCDFIYGTDKGYRFQKKLLRKLKEGVENGGEQN 309
Query: 395 DGS 403
GS
Sbjct: 308 GGS 300
Score = 159 bits (342), Expect = 2e-038
Identities = 75/101 (74%), Positives = 80/101 (79%)
Frame = -2 / +1
Query: 336 NL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIA 157
N *PLSVP SQ*V T+AKLLWL PPT** *SW SAPP*NGIYFVGV GK PLCVSIA
Sbjct: 367 NR*PLSVP*IKSQ*VNTDAKLLWLCPPT**W*SW*SAPP*NGIYFVGVQGKL*PLCVSIA 546
Query: 156 ST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAA 34
S R I +QNVIM PGT+AGP K+G+P I SAQCAYGAA
Sbjct: 547 SICRKAIHNQNVIMCPGTIAGPRKDGIPRIQISAQCAYGAA 669
Score = 107 bits (228), Expect = 8e-023
Identities = 47/116 (40%), Positives = 74/116 (63%)
Frame = -1 / +3
Query: 388 LAIIMPQILQLC*VCFVESVTFVSAI*VITVSENRSKIALALASYIMMIVMVFCSSIEWN 209
L I + QL ++ +T +S+I ITVSE+ K+ALAL+S IMM++MV C++I+WN
Sbjct: 315 LTTIFHSLFQLPKKLLLKPITLISSINKITVSEH*CKVALALSSNIMMVIMVVCTTIKWN 494
Query: 208 ILCRGEWEIKAAMCLDSLHLTEYNPEPECDHVAWNNGWPDEGGDAEYQHLSPVCIW 41
I C ++ A+ L+ L+L NP+P+CDHV N+ W + +++ + SPV IW
Sbjct: 495 IFCGSPGKVVTAVRLNCLNLP*SNPQPKCDHVPRNHCWTKKRWNSKDPNFSPVRIW 662
>gb|CN522673.1|CN522673 GQ0124.B3_M18 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0124_M18 5', mRNA sequence
Length = 438
Score = 261 bits (564), Expect = 4e-069
Identities = 97/110 (88%), Positives = 105/110 (95%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIGFAAPYAHWAEVLILGIPSF+ A+VPGHMITFWLWI LRQ EAIETHSG+
Sbjct: 107 VHHEYTAPIGFAAPYAHWAEVLILGIPSFLXXAMVPGHMITFWLWIALRQXEAIETHSGY 286
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGY 331
DFP+TPTKYIPFYGGA+YHDYHHYVGGQSQSNFASV TYCD++YGTDKGY
Sbjct: 287 DFPWTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVXTYCDFIYGTDKGY 436
Score = 181 bits (389), Expect = 5e-045
Identities = 85/110 (77%), Positives = 89/110 (80%)
Frame = -2 / -1
Query: 330 *PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIAST 151
*PLSVP SQ V T+AKLLWL PPT** *SW SAPP*NGIYFVGV GKS PLCVSIAS
Sbjct: 435 *PLSVP*IKSQYVXTDAKLLWLCPPT**W*SW*SAPP*NGIYFVGVQGKSYPLCVSIASX 256
Query: 150 *RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAANPIGAVNSW*T 1
R IQSQNVIM PGT+A K+G+P I TSAQCAYGAANPIGAV SW*T
Sbjct: 255 CRKAIQSQNVIMCPGTIAXXRKDGIPRIKTSAQCAYGAANPIGAVYSW*T 106
>gb|BP931986.1|BP931986 BP931986 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_G20.r 3', mRNA sequence
Length = 601
Score = 218 bits (470), Expect = 3e-056
Identities = 81/103 (78%), Positives = 91/103 (88%)
Frame = +2 / -2
Query: 95 PAIVPGHMITFWLWIILRQVEAIETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQS 274
PA+VPGHMITFW WI LRQ+EAIETHSG++FP+TPTKYIPFYGGA+YHDYHHYVGGQSQS
Sbjct: 600 PAMVPGHMITFWFWIALRQIEAIETHSGYNFPWTPTKYIPFYGGADYHDYHHYVGGQSQS 421
Query: 275 NFASVFTYCDYLYGTDKGYRFHKTYLAKLKDLGHNDGEKGDGS 403
NFASVFTYCD++YGTDKGYRF K L KLK+ N GE+ GS
Sbjct: 420 NFASVFTYCDFIYGTDKGYRFQKKLLRKLKEGVENGGEQNGGS 292
Score = 127 bits (271), Expect = 1e-028
Identities = 62/81 (76%), Positives = 65/81 (80%)
Frame = -2 / +2
Query: 336 NL*PLSVPYK*SQ*VKTEAKLLWLWPPT****SWYSAPP*NGIYFVGVNGKSKPLCVSIA 157
N *PLSVP SQ*V T+AKLLWL PPT** *SW SAPP*NGIYFVGV GK PLCVSIA
Sbjct: 359 NR*PLSVP*IKSQ*VNTDAKLLWLCPPT**W*SW*SAPP*NGIYFVGVQGKL*PLCVSIA 538
Query: 156 ST*RSIIQSQNVIMWPGTMAG 94
S R IQ+QNVIM PGT+AG
Sbjct: 539 SICRKAIQNQNVIMCPGTIAG 601
>gb|BU866140.1|BU866140 S063B06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 753
Score = 181 bits (390), Expect = 4e-045
Identities = 60/83 (72%), Positives = 78/83 (93%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE++AP+GFAAPYAHW+E+LILG+P+F+GPA+VPGH+ T+WLW +LRQ+EAIE HSG+
Sbjct: 503 VHHEYSAPMGFAAPYAHWSEILILGMPAFLGPAVVPGHITTYWLWFVLRQMEAIEIHSGY 682
Query: 182 DFPFTPTKYIPFYGGAEYHDYHH 250
DF ++PT++IPFYGGA YHDYHH
Sbjct: 683 DFSWSPTRFIPFYGGARYHDYHH 751
Score = 106 bits (227), Expect = 1e-022
Identities = 53/84 (63%), Positives = 58/84 (69%)
Frame = -2 / -1
Query: 252 ****SWYSAPP*NGIYFVGVNGKSKPLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMP 73
****SWY APP* GI VG++ KS PL +SIAS SQ V+M PGT AGP GMP
Sbjct: 753 ****SWYLAPP*KGINLVGLHEKSYPL*ISIASICLKTNHSQ*VVMCPGTTAGPRNAGMP 574
Query: 72 SISTSAQCAYGAANPIGAVNSW*T 1
I S QCA GAANPIGA+ SW*T
Sbjct: 573 RIKISDQCA*GAANPIGALYSW*T 502
>gb|DT526512.1|DT526512 WS02048.C21_D21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_D21 3', mRNA sequence
Length = 932
Score = 163 bits (350), Expect = 1e-039
Identities = 54/111 (48%), Positives = 79/111 (71%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + +GPAI H++T WLW++LR +E +E H G+
Sbjct: 665 VHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGY 486
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++ + ++P YGGA++HDYHH + N++S FTY D+++GTDKGYR
Sbjct: 485 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWIFGTDKGYR 333
>gb|CV246021.1|CV246021 WS0111.B21_A11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_A11 3', mRNA sequence
Length = 729
Score = 162 bits (349), Expect = 2e-039
Identities = 54/111 (48%), Positives = 79/111 (71%)
Frame = +2 / -1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + +GPAI H++T WLW++LR +E +E H G+
Sbjct: 594 VHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGY 415
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++ + ++P YGGA++HDYHH + N++S FTY D+++GTDKGYR
Sbjct: 414 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWVFGTDKGYR 262
>gb|CV248344.1|CV248344 WS01120.B21_G03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_G03 3', mRNA sequence
Length = 698
Score = 162 bits (349), Expect = 2e-039
Identities = 54/111 (48%), Positives = 79/111 (71%)
Frame = +2 / -3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + +GPAI H++T WLW++LR +E +E H G+
Sbjct: 630 VHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGY 451
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++ + ++P YGGA++HDYHH + N++S FTY D+++GTDKGYR
Sbjct: 450 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWVFGTDKGYR 298
>gb|DT495408.1|DT495408 WS01120.BR_G03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_G03 5', mRNA sequence
Length = 904
Score = 162 bits (349), Expect = 2e-039
Identities = 54/111 (48%), Positives = 79/111 (71%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+ P G + YAH AE+L LG + +GPAI H++T WLW++LR +E +E H G+
Sbjct: 543 VHHEYATPFGLTSEYAHPAEILFLGFATIIGPAITGPHLLTLWLWMVLRVLETVEAHCGY 722
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++ + ++P YGGA++HDYHH + N++S FTY D+++GTDKGYR
Sbjct: 723 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWVFGTDKGYR 875
>gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 559
Score = 161 bits (346), Expect = 4e-039
Identities = 54/111 (48%), Positives = 78/111 (70%)
Frame = +2 / +3
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
+HHE+ P G + YAH AE+L LG + VGPAI H++T WLW++LR +E +E H G+
Sbjct: 162 IHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLVTLWLWMVLRVLETVEAHCGY 341
Query: 182 DFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYR 334
FP++ + ++P YGGA++HDYHH + N++S FTY D++ GTDKGYR
Sbjct: 342 HFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDWVXGTDKGYR 494
>gb|BP931647.1|BP931647 BP931647 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_J02.r 3', mRNA sequence
Length = 519
Score = 158 bits (339), Expect = 4e-038
Identities = 61/80 (76%), Positives = 67/80 (83%)
Frame = +2 / -1
Query: 164 ETHSGFDFPFTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHK 343
ETHSG+DF +TPTKYIPFYGGA+YHDYHHYVGGQSQSNFASVFTYCD++YGTDKGYRF K
Sbjct: 519 ETHSGYDFXWTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDFIYGTDKGYRFQK 340
Query: 344 TYLAKLKDLGHNDGEKGDGS 403
L KLK N E+ GS
Sbjct: 339 KLLWKLKRGVENGVEQNGGS 280
>gb|BU864869.1|BU864869 S046A03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 712
Score = 147 bits (316), Expect = 6e-035
Identities = 49/70 (70%), Positives = 67/70 (95%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE++AP+GFAAPYAHW+E+LILG+P+F+GPA+VPGH+ T+WLW +LRQ+EAIETHSG+
Sbjct: 503 VHHEYSAPMGFAAPYAHWSEILILGMPAFLGPAVVPGHITTYWLWFVLRQMEAIETHSGY 682
Query: 182 DFPFTPTKYI 211
DF ++PT++I
Sbjct: 683 DFSWSPTRFI 712
>gb|BU861358.1|BU861358 S001B09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 703
Score = 144 bits (310), Expect = 4e-034
Identities = 48/70 (68%), Positives = 66/70 (94%)
Frame = +2 / +2
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE++AP+GFAAPYAHW+E+LILG+P+F+GPA+VPGH+ T+WLW +LRQ+EAIE HSG+
Sbjct: 494 VHHEYSAPMGFAAPYAHWSEILILGMPAFLGPAVVPGHITTYWLWFVLRQMEAIEIHSGY 673
Query: 182 DFPFTPTKYI 211
DF ++PT++I
Sbjct: 674 DFSWSPTRFI 703
>gb|CN520588.1|CN520588 GQ0105.B3_E10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_E10 5', mRNA sequence
Length = 792
Score = 142 bits (304), Expect = 3e-033
Identities = 54/71 (76%), Positives = 57/71 (80%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAIETHSGF 181
VHHE+TAPIGFAAPYAHWAEVLILG PSF+GPA+VPGHMITFWLWI LR EA H
Sbjct: 580 VHHEYTAPIGFAAPYAHWAEVLILGXPSFLGPAMVPGHMITFWLWIALRXXEAXXXHXXX 759
Query: 182 DFPFTPTKYIP 214
P PTKYIP
Sbjct: 760 XXPXXPTKYIP 792
Score = 110 bits (235), Expect = 9e-024
Identities = 49/71 (69%), Positives = 51/71 (71%)
Frame = -2 / -2
Query: 213 GIYFVGVNGKSKPLCVSIAST*RSIIQSQNVIMWPGTMAGPTKEGMPSISTSAQCAYGAA 34
GIYFVG G L AS R IQSQNVIM PGT+AGP K+G P I TSAQCAYGAA
Sbjct: 791 GIYFVGXXGXXXXLXXXXASXCRKAIQSQNVIMCPGTIAGPRKDGXPRIKTSAQCAYGAA 612
Query: 33 NPIGAVNSW*T 1
NPIGAV SW*T
Sbjct: 611 NPIGAVYSW*T 579
>gb|CX658359.1|CX658359 PO01034B11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034B11 5', mRNA sequence
Length = 464
Score = 139 bits (299), Expect = 1e-032
Identities = 54/71 (76%), Positives = 59/71 (83%)
Frame = +2 / +2
Query: 191 FTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKDL 370
+TPTKYIPFYGGA+YHDYHHYVGGQSQSNFASVFTYCD++YGTDKGYRF K L KLK
Sbjct: 2 WTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDFIYGTDKGYRFQKKLLWKLKKG 181
Query: 371 GHNDGEKGDGS 403
N E+ GS
Sbjct: 182 VENGVEQNGGS 214
>gb|DV464349.1|DV464349 MTUNUL1.P26.D03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 775
Score = 129 bits (277), Expect = 1e-029
Identities = 48/54 (88%), Positives = 53/54 (98%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMITFWLWIILRQVEAI 163
VHHE+TAPIGFAAPYAHWAEVLILGIPSF+GPA+VPGHM+TFWLWI LRQ+EAI
Sbjct: 613 VHHEYTAPIGFAAPYAHWAEVLILGIPSFLGPAMVPGHMMTFWLWIALRQIEAI 774
>gb|DN489710.1|DN489710 T072G12.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T072G12 3', mRNA sequence
Length = 498
Score = 116 bits (248), Expect(2) = 2e-028
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = +2 / -2
Query: 197 PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRF 337
PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCD++YGTDK R+
Sbjct: 497 PTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDFIYGTDKVSRY 357
Score = 29.5 bits (58), Expect(2) = 2e-028
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2 / -3
Query: 320 DKGYRFHKTYLAKLKDLGHNDGEKGDGS 403
D+GYRF K L KLK N E+ GS
Sbjct: 295 DQGYRFQKKLLWKLKKGVENGVEQNGGS 212
>gb|DN488487.1|DN488487 S001B09.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S001B09 3', mRNA sequence
Length = 380
Score = 122 bits (261), Expect = 2e-027
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +2 / -2
Query: 191 FTPTKYIPFYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLKDL 370
++P ++IPFYGGA YHDYHHYVG SQSNFASVFT CDYLYGTDKGYR+HK+ L K+++
Sbjct: 379 WSPARFIPFYGGARYHDYHHYVGRHSQSNFASVFTDCDYLYGTDKGYRYHKSILRKMEET 200
Query: 371 GHNDGEKGDGS 403
+ +GS
Sbjct: 199 VERNVGHREGS 167
>gb|BP934563.1|BP934563 BP934563 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-066_M21.r 3', mRNA sequence
Length = 525
Score = 108 bits (231), Expect = 3e-023
Identities = 41/50 (82%), Positives = 43/50 (86%)
Frame = +2 / -1
Query: 215 FYGGAEYHDYHHYVGGQSQSNFASVFTYCDYLYGTDKGYRFHKTYLAKLK 364
F GG +YHDYHHYVGGQSQSNFASVFTYCD +YGTDKGYRF K L KLK
Sbjct: 525 FNGGPDYHDYHHYVGGQSQSNFASVFTYCDLIYGTDKGYRFQKKLLWKLK 376
>gb|BU835353.1|BU835353 T072G12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 705
Score = 101 bits (215), Expect = 5e-021
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +2 / +1
Query: 2 VHHEFTAPIGFAAPYAHWAEVLILGIPSFVGPAIVPGHMIT 124
VHHE+TAPIGFAAPYAHWAEVLILGIPSF+GPA+VPGHMIT
Sbjct: 583 VHHEYTAPIGFAAPYAHWAEVLILGIPSFLGPAMVPGHMIT 705
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 362,382,437
Number of Sequences: 369679
Number of extensions: 5441286
Number of successful extensions: 49143
Number of sequences better than 1.0e-020: 27
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8566120325
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)