TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX169718.1|CX169718 H05_69-21_15.ab1 leaf inoculated wit... 91 7e-041
gb|BU813083.1|BU813083 N005A07 Populus bark cDNA library Po... 91 3e-040
gb|AJ780776.1|AJ780776 AJ780776 Populus euphratica leaf 3-6... 87 3e-034
gb|CA933358.1|CA933358 MTU5CS.P6.H08 Aspen stem cDNA Librar... 85 9e-033
gb|CA932833.1|CA932833 MTU5CS.P18.A11 Aspen stem cDNA Libra... 84 3e-032
gb|CX655144.1|CX655144 PO02030E02 Poplar SC cDNA library Po... 72 4e-026
gb|DT504746.1|DT504746 WS01314.B21_I22 PTxD-IL-FL-A-4 Popul... 74 5e-026
gb|DT507195.1|DT507195 WS02417.BR_J18 PTxD-ICC-N-A-14 Popul... 72 7e-026
gb|CV254318.1|CV254318 WS0224.B21_M22 PTxD-ICC-A-12 Populus... 72 7e-026
gb|CX168397.1|CX168397 C03_69-79_05.ab1 leaf inoculated wit... 91 1e-025
gb|CF234614.1|CF234614 PtaJXT0013A12A1202 Poplar cDNA libra... 70 1e-025
gb|DT511843.1|DT511843 WS02417.B21_J18 PTxD-ICC-N-A-14 Popu... 70 3e-025
gb|CV266915.1|CV266915 WS02030.B21_F04 PTxN-IB-N-A-11 Popul... 74 1e-024
gb|CK319249.1|CK319249 X9P08e11 Populus stem seasonal libra... 72 2e-023
gb|CV274592.1|CV274592 WS0173.B21_M08 PTxD-NR-A-8 Populus t... 63 4e-023
gb|CX654525.1|CX654525 PO02012A06 Poplar SC cDNA library Po... 67 8e-023
gb|CK088269.1|CK088269 A045P57.3pR Hybrid aspen plasmid lib... 91 1e-022
gb|CV227865.1|CV227865 WS0168.B21_G24 PT-DX-A-7 Populus tri... 63 2e-021
>gb|CX169718.1|CX169718 H05_69-21_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 636
Score = 90.9 bits (192), Expect(3) = 7e-041
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +3 / +1
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G+GRP QLIGFQS+ L A + A +EFEVSPC+H SRA EDG V+++G HF++V DE+
Sbjct: 367 GNGRPRKQLIGFQSVVLGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVEGDEY 546
Query: 504 EMS 512
+S
Sbjct: 547 PIS 555
Score = 72.1 bits (151), Expect(3) = 5e-024
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = -2 / -2
Query: 508 ISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPISWLAGRP 329
I SS T KC P SIT PSS+A L+C QGLTSNS A+ A LWNPIS G P
Sbjct: 551 IGYSSPSTTKKCLPSSITIRPSSLALLRCSQGLTSNSISALSPAPNTTLWNPISCFLGLP 372
Query: 328 LP 323
P
Sbjct: 371 FP 366
Score = 69.3 bits (145), Expect(3) = 7e-041
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3 / +1
Query: 6 ADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSH 107
A+ ++GYPGRTYRFY+G +VF FGYG+SYSKYS+
Sbjct: 49 AEASSGYPGRTYRFYKGRSVFEFGYGISYSKYSY 150
Score = 45.1 bits (92), Expect(3) = 7e-041
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3 / +1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ +G+E C++ K A + V+NHG M GKH VL+F R +G R
Sbjct: 244 ISELGTEFCEQNKCRARIGVKNHGDMAGKHPVLLFARQEKHGNGRPR 384
Score = 44.1 bits (90), Expect(3) = 5e-024
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = -2 / -2
Query: 103 EYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSA 5
EY E*L P*P T+ P *N YVRPG*P SA
Sbjct: 146 EYFE*LMP*PNSKTLRPL*NLYVRPG*PEEASA 48
Score = 31.8 bits (63), Expect(3) = 5e-024
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2 / -2
Query: 328 LPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDP 206
LP N+ T C P++ PWF T A +L S S P
Sbjct: 377 LPFPCFSCLANSKTGCLPAISPWFFTPILARHLFCSQNSVP 255
>gb|BU813083.1|BU813083 N005A07 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 720
Score = 90.9 bits (192), Expect(3) = 3e-040
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +3 / +1
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G+GRP QLIGFQS+ L A + A +EFEVSPC+H SRA EDG V+++G HF++V DE+
Sbjct: 493 GNGRPRKQLIGFQSVVLGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVEGDEY 672
Query: 504 EMS 512
+S
Sbjct: 673 PIS 681
Score = 72.1 bits (151), Expect(3) = 4e-024
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = -2 / -2
Query: 508 ISNSSSPTITKCEP*SITFLPSSVARLKCLQGLTSNSTCAVCVALRCRLWNPISWLAGRP 329
I SS T KC P SIT PSS+A L+C QGLTSNS A+ A LWNPIS G P
Sbjct: 677 IGYSSPSTTKKCLPSSITIRPSSLALLRCSQGLTSNSISALSPAPNTTLWNPISCFLGLP 498
Query: 328 LP 323
P
Sbjct: 497 FP 492
Score = 67.0 bits (140), Expect(3) = 3e-040
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +3 / +1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSH 107
R + ++GYPGRTYRFY+G +VF FG+G+SYSKYS+
Sbjct: 172 RPEASSGYPGRTYRFYKGRSVFEFGHGISYSKYSY 276
Score = 45.1 bits (92), Expect(3) = 3e-040
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3 / +1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ +G+E C++ K A + V+NHG M GKH VL+F R +G R
Sbjct: 370 ISELGTEFCEQNKCRARIGVKNHGDMAGKHPVLLFARQEKHGNGRPR 510
Score = 44.6 bits (91), Expect(3) = 4e-024
Identities = 21/34 (61%), Positives = 22/34 (64%)
Frame = -2 / -2
Query: 103 EYLE*LRP*PKLNTVGPR*NRYVRPG*PVAGSAR 2
EY E*L P*P T+ P *N YVRPG*P S R
Sbjct: 272 EYFE*LMP*PNSKTLRPL*NLYVRPG*PEEASGR 171
Score = 31.8 bits (63), Expect(3) = 4e-024
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2 / -2
Query: 328 LPSVALGQRMNTSTECFPSMGPWFCTRTTAGNLSRSHVSDP 206
LP N+ T C P++ PWF T A +L S S P
Sbjct: 503 LPFPCFSCLANSKTGCLPAISPWFFTPILARHLFCSQNSVP 381
>gb|AJ780776.1|AJ780776 AJ780776 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900013C09F1, mRNA sequence
Length = 478
Score = 87.2 bits (184), Expect(3) = 3e-034
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +3 / -1
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDE 500
G+GRP QLIGFQS+ L A + A +EFE+SPC+H SRA EDG V+++G HF++V DE
Sbjct: 178 GNGRPRKQLIGFQSVVLDAGERAEIEFEISPCEHLSRANEDGLMVMEEGRHFLVVEGDE 2
Score = 51.9 bits (107), Expect(3) = 3e-034
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / -1
Query: 36 TYRFYRGPTVFNFGYGLSYSKYSHRFAT 119
TYRFY+G TVF FG+G+SYSKYS+ +
Sbjct: 466 TYRFYKGRTVFEFGHGISYSKYSYELTS 383
Score = 43.7 bits (89), Expect(3) = 3e-034
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3 / -1
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ +G+E C++ K A + V+NHG + GKH VL+F R +G R
Sbjct: 301 ISELGTEFCEQSKCRARIGVKNHGEVAGKHPVLLFARQEKHGNGRPR 161
>gb|CA933358.1|CA933358 MTU5CS.P6.H08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 462
Score = 85.4 bits (180), Expect(3) = 9e-033
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = +3 / +2
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGED 497
G+GRP QLIGFQS+ L A + A +EFEVSPC+H SRA EDG V+++G HF++V D
Sbjct: 287 GNGRPRKQLIGFQSVVLGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVEGD 460
Score = 47.3 bits (97), Expect(3) = 9e-033
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +3 / +2
Query: 39 YRFYRGPTVFNFGYGLSYSKYSH 107
YRFY+G +VF FG+G+SYSKYS+
Sbjct: 2 YRFYKGRSVFEFGHGISYSKYSY 70
Score = 45.1 bits (92), Expect(3) = 9e-033
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3 / +2
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ +G+E C++ K A + V+NHG M GKH VL+F R +G R
Sbjct: 164 ISELGTEFCEQNKCRARIGVKNHGEMAGKHPVLLFARQEKHGNGRPR 304
>gb|CA932833.1|CA932833 MTU5CS.P18.A11 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 462
Score = 83.5 bits (176), Expect(3) = 3e-032
Identities = 33/58 (56%), Positives = 43/58 (74%)
Frame = +3 / +2
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGED 497
G+GRP QLIGFQS+ A + A +EFEVSPC+H SRA EDG V+++G HF++V D
Sbjct: 287 GNGRPRKQLIGFQSVVFGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVEGD 460
Score = 47.3 bits (97), Expect(3) = 3e-032
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +3 / +2
Query: 39 YRFYRGPTVFNFGYGLSYSKYSH 107
YRFY+G +VF FG+G+SYSKYS+
Sbjct: 2 YRFYKGRSVFEFGHGISYSKYSY 70
Score = 45.1 bits (92), Expect(3) = 3e-032
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3 / +2
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ +G+E C++ K A + V+NHG M GKH VL+F R +G R
Sbjct: 164 ISELGTEFCEQNKCRARIGVKNHGEMAGKHPVLLFARQEKHGNGRPR 304
>gb|CX655144.1|CX655144 PO02030E02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E02 5', mRNA sequence
Length = 586
Score = 71.6 bits (150), Expect(3) = 4e-026
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYRFY G TV++FG GLSY K+SH P
Sbjct: 83 RPDPSNGYPGRTYRFYTGETVYSFGDGLSYCKFSHELTQAP 205
Score = 46.0 bits (94), Expect(3) = 4e-026
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3 / +2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVG 491
P L+GF+ + L A +HV F+V CK S E G K + G H + +G
Sbjct: 395 PQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIG 550
Score = 37.7 bits (76), Expect(3) = 4e-026
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3 / +2
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
A +TC L F +R++N G M G H+V +F P+
Sbjct: 269 AAAEQTCQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPS 382
>gb|DT504746.1|DT504746 WS01314.B21_I22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_I22 3', mRNA sequence
Length = 875
Score = 74.4 bits (156), Expect(3) = 5e-026
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3 / -3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTS 137
RADP+ GYPGRTYRFY+GP VF FG+G+SY+ ++H P S
Sbjct: 804 RADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREVS 670
Score = 47.8 bits (98), Expect(3) = 5e-026
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3 / -3
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G QLIGF+ +HL V+ ++ CKH S G + I G H++ +G+ +
Sbjct: 498 GKWSTQKQLIGFEKVHLVTGSQKRVKIDIHVCKHLSVVDRFGIRRIPNGEHYLYIGDLKH 319
Query: 504 EMSFMA 521
+S A
Sbjct: 318 SISLQA 301
Score = 32.7 bits (65), Expect(3) = 5e-026
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3 / -3
Query: 204 IGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWP 311
+ C+ L + V+N G MDG H++LVF P
Sbjct: 609 VSHANCEALALGVHIDVKNTGDMDGTHTLLVFSSPP 502
>gb|DT507195.1|DT507195 WS02417.BR_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J18 5', mRNA sequence
Length = 783
Score = 72.1 bits (151), Expect(3) = 7e-026
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYRFY G TV++FG GLSYS++SH P
Sbjct: 260 RPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAP 382
Score = 47.3 bits (97), Expect(3) = 7e-026
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +3 / +2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEMSF 515
P L+GF+ + L A +HV F+V CK S E G K + G H + +G + M+
Sbjct: 572 PQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTV 751
Query: 516 MA*SR 530
*++
Sbjct: 752 RI*NK 766
Score = 35.0 bits (70), Expect(3) = 7e-026
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3 / +2
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
A +TC L F +R++N G G H+V +F P+
Sbjct: 446 AAAEQTCQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPS 559
>gb|CV254318.1|CV254318 WS0224.B21_M22 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0224_M22 3', mRNA sequence
Length = 745
Score = 72.1 bits (151), Expect(3) = 7e-026
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3 / -2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYRFY G TV++FG GLSYS++SH P
Sbjct: 732 RPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAP 610
Score = 47.3 bits (97), Expect(3) = 7e-026
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +3 / -2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEMSF 515
P L+GF+ + L A +HV F+V CK S E G K + G H + +G + M+
Sbjct: 420 PQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTV 241
Query: 516 MA*SR 530
*++
Sbjct: 240 RI*NK 226
Score = 35.0 bits (70), Expect(3) = 7e-026
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3 / -2
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
A +TC L F +R++N G G H+V +F P+
Sbjct: 546 AAAEQTCQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPS 433
>gb|CX168397.1|CX168397 C03_69-79_05.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 621
Score = 90.9 bits (192), Expect(2) = 1e-025
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +3 / -3
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G+GRP QLIGFQS+ L A + A +EFEVSPC+H SRA EDG V+++G HF++V DE+
Sbjct: 436 GNGRPRKQLIGFQSVVLGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVEGDEY 257
Query: 504 EMS 512
+S
Sbjct: 256 PIS 248
Score = 45.1 bits (92), Expect(2) = 1e-025
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3 / -3
Query: 195 VEAIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ +G+E C++ K A + V+NHG M GKH VL+F R +G R
Sbjct: 559 ISELGTEFCEQNKCRARIGVKNHGDMAGKHPVLLFARQEKHGNGRPR 419
>gb|CF234614.1|CF234614 PtaJXT0013A12A1202 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 753
Score = 70.3 bits (147), Expect(3) = 1e-025
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +3 / +1
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYR Y G TV++FG GLSYSK+SH P
Sbjct: 43 RPDPSNGYPGRTYRSYTGETVYSFGDGLSYSKFSHELTQAP 165
Score = 45.5 bits (93), Expect(3) = 1e-025
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3 / +1
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVG 491
P L+GF+ + L A +HV F+V CK S E G K + G H + +G
Sbjct: 355 PQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGGKKVALGEHVLHIG 510
Score = 37.7 bits (76), Expect(3) = 1e-025
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3 / +1
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
A +TC L F +R++N G M G H+V +F P+
Sbjct: 229 AAAEQTCQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPS 342
>gb|DT511843.1|DT511843 WS02417.B21_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J18 3', mRNA sequence
Length = 679
Score = 69.8 bits (146), Expect(3) = 3e-025
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = +3 / -2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYRFY G TV++FG GLSY ++SH P
Sbjct: 636 RPDPSNGYPGRTYRFYTGETVYSFGDGLSYCEFSHELTQAP 514
Score = 47.3 bits (97), Expect(3) = 3e-025
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +3 / -2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEMSF 515
P L+GF+ + L A +HV F+V CK S E G K + G H + +G + M+
Sbjct: 324 PQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTV 145
Query: 516 MA*SR 530
*++
Sbjct: 144 RI*NK 130
Score = 35.0 bits (70), Expect(3) = 3e-025
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3 / -2
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
A +TC L F +R++N G G H+V +F P+
Sbjct: 450 AAAEQTCQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPS 337
>gb|CV266915.1|CV266915 WS02030.B21_F04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_F04 3', mRNA sequence
Length = 941
Score = 74.4 bits (156), Expect(3) = 1e-024
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3 / -3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTS 137
RADP+ GYPGRTYRFY+GP VF FG+G+SY+ ++H P S
Sbjct: 831 RADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREVS 697
Score = 42.8 bits (87), Expect(3) = 1e-024
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3 / -3
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G QLIGF+ +HL V+ ++ CKH S G + I G H + +G+ +
Sbjct: 525 GKWSTQKQLIGFEKVHLVTGSQKRVKIDIHVCKHLSVVDRFGIRRIPIGEHDLYMGDLKH 346
Query: 504 EMSFMA 521
+S A
Sbjct: 345 SISLQA 328
Score = 32.7 bits (65), Expect(3) = 1e-024
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3 / -3
Query: 204 IGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWP 311
+ C+ L + V+N G MDG H++LVF P
Sbjct: 636 VSHANCEALALGVHIDVKNTGDMDGTHTLLVFSSPP 529
>gb|CK319249.1|CK319249 X9P08e11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 72.1 bits (151), Expect(3) = 2e-023
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYRFY G TV++FG GLSYS++SH P
Sbjct: 203 RPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAP 325
Score = 37.7 bits (76), Expect(3) = 2e-023
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3 / +2
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLVFMRWPN 314
A +TC L F +R++N G M G H+V +F P+
Sbjct: 389 AAAEQTCQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPS 502
Score = 35.9 bits (72), Expect(3) = 2e-023
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3 / +2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDG 449
P L+GF+ + L A +HV F+V CK S E G
Sbjct: 515 PQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELG 628
>gb|CV274592.1|CV274592 WS0173.B21_M08 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_M08 3', mRNA sequence
Length = 815
Score = 62.9 bits (131), Expect(3) = 4e-023
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +3 / -3
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTS 137
R + GYPGRTYRFY+G V+ FG+G+SY+ + H A+ P S
Sbjct: 744 RPSKSNGYPGRTYRFYKGKVVYPFGHGISYTNFVHTIASAPTMVS 610
Score = 43.2 bits (88), Expect(3) = 4e-023
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3 / -3
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G P QL+ F+ +H+ A V +V CK S G + I G+H + +G+ +
Sbjct: 435 GHWAPLKQLVAFEKVHVAAGTQQRVGIDVHVCKFLSVVDRSGIRRIPMGAHSLHIGDVKH 256
Query: 504 EMSFMA 521
+S A
Sbjct: 255 SVSLQA 238
Score = 38.6 bits (78), Expect(3) = 4e-023
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3 / -3
Query: 219 CDRLKFPAVVRVQNHGPMDGKHSVLVFMRWP 311
C+RL F V V+N G MDG H++LV+ + P
Sbjct: 531 CNRLSFGVQVDVKNTGSMDGTHTLLVYSKPP 439
>gb|CX654525.1|CX654525 PO02012A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012A06 5', mRNA sequence
Length = 635
Score = 67.0 bits (140), Expect(3) = 8e-023
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3 / +2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKP 125
R DP+ GYPGRTYRFY G TV++FG LSYS +SH P
Sbjct: 101 RTDPSNGYPGRTYRFYTGETVYSFGD*LSYSXFSHELTQAP 223
Score = 45.1 bits (92), Expect(3) = 8e-023
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3 / +2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVG 491
P L+GF+ + + A +HV F+V CK S E G K + G H + +G
Sbjct: 413 PQKHLVGFEKVFMHAQTDSHVGFKVDVCKDLSVVDELGSKKVAWGEHVLHIG 568
Score = 31.8 bits (63), Expect(3) = 8e-023
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3 / +2
Query: 201 AIGSETCDRLKFPAVVRVQNHGPMDGKHSVLV 296
A +TC L F +R++N G M G H V +
Sbjct: 287 AAAEQTCQNLTFDVHLRIKNTGTMSGSH*VFL 382
>gb|CK088269.1|CK088269 A045P57.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A045P57 3', mRNA sequence
Length = 471
Score = 90.9 bits (192), Expect(2) = 1e-022
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +3 / -1
Query: 324 GSGRPASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEF 503
G+GRP QLIGFQS+ L A + A +EFEVSPC+H SRA EDG V+++G HF++V DE+
Sbjct: 291 GNGRPRKQLIGFQSVVLGAGERAEIEFEVSPCEHLSRANEDGLMVMEEGRHFLVVEGDEY 112
Query: 504 EMS 512
+S
Sbjct: 111 PIS 103
Score = 35.0 bits (70), Expect(2) = 1e-022
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3 / -1
Query: 225 RLKFPAVVRVQNHGPMDGKHSVLVFMRWPNATDGSGR 335
+ K A + V+NHG M GKH VL+F R +G R
Sbjct: 384 KTKCRARIGVKNHGDMAGKHPVLLFSRQEKHGNGRPR 274
>gb|CV227865.1|CV227865 WS0168.B21_G24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_G24
3', mRNA sequence
Length = 845
Score = 63.4 bits (132), Expect(3) = 2e-021
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3 / -2
Query: 3 RADPATGYPGRTYRFYRGPTVFNFGYGLSYSKYSHRFATKPPPTS 137
R+ + GYPGRTYRFY+G V+ FG+G+SY+ + H A+ P S
Sbjct: 775 RSSKSKGYPGRTYRFYKGKVVYPFGHGISYTNFVHTIASAPTMVS 641
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3 / -2
Query: 336 PASQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGEDEFEMSF 515
P QL+ F+ +H+ A V + CK S G + I G H + +G+ + +S
Sbjct: 454 PHKQLVAFEKVHVAAGTQQRVGINIHVCKSLSVVDGSGIRRIPMGEHSLHIGDVKHSVSL 275
Query: 516 MA 521
A
Sbjct: 274 QA 269
Score = 36.3 bits (73), Expect(3) = 2e-021
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3 / -2
Query: 219 CDRLKFPAVVRVQNHGPMDGKHSVLVFMRWP 311
C+RL V V+N G MDG H++LV+ R P
Sbjct: 562 CNRLSLGMQVDVKNIGSMDGTHTLLVYSRPP 470
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 167,604,335
Number of Sequences: 369679
Number of extensions: 2029471
Number of successful extensions: 37838
Number of sequences better than 1.0e-020: 20
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6314454411
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)