TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX178987.1|CX178987 G08_45-7_14.ab1 leaf inoculated with... 165 2e-040
gb|BU862230.1|BU862230 S013A10 Populus imbibed seed cDNA li... 164 4e-040
gb|BU869350.1|BU869350 M129A11 Populus flower cDNA library ... 164 4e-040
gb|CA821610.1|CA821610 RSH05B05 two-month-old roots from cl... 164 4e-040
gb|CA825445.1|CA825445 R59A04 two-month-old roots from clon... 164 4e-040
gb|CK099666.1|CK099666 A080P06.5pR Hybrid aspen plasmid lib... 164 4e-040
gb|CV236681.1|CV236681 WS01225.B21.1_A02 PT-GT-FL-A-3 Popul... 164 4e-040
gb|DT472071.1|DT472071 WS01225.BR.1_A02 PT-GT-FL-A-3 Populu... 164 4e-040
gb|DT481569.1|DT481569 WS02532.BR_E03 PT-MB-N-A-15 Populus ... 164 4e-040
gb|DT493062.1|DT493062 WS02553.C21_E10 PT-MB-N-A-15 Populus... 164 4e-040
gb|DT495081.1|DT495081 WS0112.BR_F08 PT-P-FL-A-2 Populus tr... 164 4e-040
gb|DT495513.1|DT495513 WS01120.BR_L03 PT-P-FL-A-2 Populus t... 164 4e-040
gb|CF231483.1|CF231483 PtaC0022A11A1101 Poplar cDNA library... 163 1e-039
gb|BU833423.1|BU833423 T047G10 Populus apical shoot cDNA li... 161 3e-039
gb|BU822258.1|BU822258 UB34DPE10 Populus tremula cambium cD... 161 4e-039
gb|DT495044.1|DT495044 WS0112.BR_D08 PT-P-FL-A-2 Populus tr... 161 4e-039
gb|CK109309.1|CK109309 M105C04 Populus female catkins cDNA ... 154 6e-037
gb|AI165261.1|AI165261 A080P06U Hybrid aspen plasmid librar... 128 3e-034
gb|BU828727.1|BU828727 K027P57P Populus apical shoot cDNA l... 112 2e-024
gb|CV264107.1|CV264107 WS02023.B21_K06 PTxN-IB-N-A-11 Popul... 85 2e-021
>gb|CX178987.1|CX178987 G08_45-7_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 430
Score = 165 bits (355), Expect = 2e-040
Identities = 68/78 (87%), Positives = 71/78 (91%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 61 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 240
Query: 330 LNYNTLEKTETS*VSKHI 277
LNYNTLEK+E S* + I
Sbjct: 241 LNYNTLEKSEGS*EAHRI 294
>gb|BU862230.1|BU862230 S013A10 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 541
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 101 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 280
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 281 LNYNTLEKSEGS* 319
>gb|BU869350.1|BU869350 M129A11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 557
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 89 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 268
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 269 LNYNTLEKSEGS* 307
>gb|CA821610.1|CA821610 RSH05B05 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 614
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 93 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 272
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 273 LNYNTLEKSEGS* 311
>gb|CA825445.1|CA825445 R59A04 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 588
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 93 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 272
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 273 LNYNTLEKSEGS* 311
>gb|CK099666.1|CK099666 A080P06.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A080P06 5', mRNA sequence
Length = 559
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 84 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 263
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 264 LNYNTLEKSEGS* 302
>gb|CV236681.1|CV236681 WS01225.B21.1_A02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_A02 3', mRNA sequence
Length = 638
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / -1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 506 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 327
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 326 LNYNTLEKSEGS* 288
>gb|DT472071.1|DT472071 WS01225.BR.1_A02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_A02 5', mRNA sequence
Length = 607
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 102 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 281
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 282 LNYNTLEKSEGS* 320
>gb|DT481569.1|DT481569 WS02532.BR_E03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_E03 5', mRNA sequence
Length = 825
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / -2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 467 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 288
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 287 LNYNTLEKSEGS* 249
>gb|DT493062.1|DT493062 WS02553.C21_E10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E10 3', mRNA sequence
Length = 588
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / -2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 500 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 321
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 320 LNYNTLEKSEGS* 282
>gb|DT495081.1|DT495081 WS0112.BR_F08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_F08
5', mRNA sequence
Length = 594
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 100 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 279
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 280 LNYNTLEKSEGS* 318
>gb|DT495513.1|DT495513 WS01120.BR_L03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_L03 5', mRNA sequence
Length = 719
Score = 164 bits (353), Expect = 4e-040
Identities = 67/73 (91%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 90 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 269
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 270 LNYNTLEKSEGS* 308
>gb|CF231483.1|CF231483 PtaC0022A11A1101 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 542
Score = 163 bits (350), Expect = 1e-039
Identities = 67/78 (85%), Positives = 70/78 (89%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDA DAL L RYCCRRMLMTHVDLIEKL
Sbjct: 97 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDAXDALGLVRYCCRRMLMTHVDLIEKL 276
Query: 330 LNYNTLEKTETS*VSKHI 277
LNYNTLEK+E S* + I
Sbjct: 277 LNYNTLEKSEGS*EAHRI 330
>gb|BU833423.1|BU833423 T047G10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 432
Score = 161 bits (347), Expect = 3e-039
Identities = 66/78 (84%), Positives = 70/78 (89%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGN+WD YLDLLQADY+EGDA DAL L RYCCRRMLMTHVDLIEKL
Sbjct: 32 KMIIPVRCFTCGKVIGNEWDTYLDLLQADYTEGDAFDALGLVRYCCRRMLMTHVDLIEKL 211
Query: 330 LNYNTLEKTETS*VSKHI 277
LNYNTLEK+E S* + I
Sbjct: 212 LNYNTLEKSEGS*EAHRI 265
>gb|BU822258.1|BU822258 UB34DPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 454
Score = 161 bits (346), Expect = 4e-039
Identities = 67/78 (85%), Positives = 70/78 (89%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD LDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 85 KMIIPVRCFTCGKVIGNKWDTCLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 264
Query: 330 LNYNTLEKTETS*VSKHI 277
LNYNTLEK+E S* + I
Sbjct: 265 LNYNTLEKSEGS*EAHRI 318
>gb|DT495044.1|DT495044 WS0112.BR_D08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_D08
5', mRNA sequence
Length = 557
Score = 161 bits (346), Expect = 4e-039
Identities = 66/73 (90%), Positives = 68/73 (93%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIP RCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 100 KMIIPGRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 279
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK+E S*
Sbjct: 280 LNYNTLEKSEGS* 318
>gb|CK109309.1|CK109309 M105C04 Populus female catkins cDNA library Populus trichocarpa
cDNA clone M105C04 5', mRNA sequence
Length = 328
Score = 154 bits (330), Expect = 6e-037
Identities = 60/68 (88%), Positives = 64/68 (94%)
Frame = -3 / +1
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+ PVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC+RMLMTHVDLIEKLLN
Sbjct: 88 LYPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCKRMLMTHVDLIEKLLN 267
Query: 324 YNTLEKTE 301
YNTLEK+E
Sbjct: 268 YNTLEKSE 291
>gb|AI165261.1|AI165261 A080P06U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 418
Score = 128 bits (274), Expect(2) = 3e-034
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 349
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHV
Sbjct: 18 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHV 179
Score = 36.3 bits (73), Expect(2) = 3e-034
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3 / +2
Query: 345 LIEKLLNYNTLEKTETS* 292
LIEKLLNYNTLEK+E S*
Sbjct: 182 LIEKLLNYNTLEKSEGS* 235
>gb|BU828727.1|BU828727 K027P57P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 214
Score = 112 bits (240), Expect = 2e-024
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRR 367
KMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCR+
Sbjct: 59 KMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRK 202
>gb|CV264107.1|CV264107 WS02023.B21_K06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_K06 3', mRNA sequence
Length = 466
Score = 84.9 bits (179), Expect(2) = 2e-021
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = -3 / -1
Query: 411 DALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
DALDAL L RYCCRRMLMTHVDLIEKLLNYNTLEK+E S*
Sbjct: 358 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKSEGS* 239
Score = 36.8 bits (74), Expect(2) = 2e-021
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -3
Query: 510 KMIIPVRCFTCGK 472
KMIIPVRCFTCGK
Sbjct: 398 KMIIPVRCFTCGK 360
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 276,401,084
Number of Sequences: 369679
Number of extensions: 3347515
Number of successful extensions: 59004
Number of sequences better than 1.0e-020: 23
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7391338109
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)