TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus... 135 4e-038
gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populu... 135 4e-038
gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA librar... 135 4e-038
gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed l... 135 2e-037
gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus t... 135 4e-037
gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Popu... 132 1e-033
gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Popul... 132 1e-033
gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Popu... 132 1e-033
gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus... 130 4e-033
gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Popu... 130 5e-033
gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus... 130 5e-033
gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Popul... 130 5e-033
gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichoca... 133 2e-030
gb|CV235386.1|CV235386 WS01218.B21_O19 PT-GT-FL-A-3 Populus... 122 4e-029
gb|DT491616.1|DT491616 WS02548.C21_E07 PT-MB-N-A-15 Populus... 122 4e-029
gb|DT520719.1|DT520719 WS02448.B21_F15 PTxD-ICC-N-A-14 Popu... 122 5e-029
gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library ... 127 2e-028
gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus t... 104 6e-028
gb|BP933938.1|BP933938 BP933938 full-length enriched poplar... 83 1e-022
>gb|CV252969.1|CV252969 PX0019.B21.1_L02 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_L02 3', mRNA sequence
Length = 715
Score = 135 bits (289), Expect(2) = 4e-038
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AII HPR+GEYAFGFITSTV+LQ D DEELCSV+VPTNHLYIGDIFLVNS RPNLS
Sbjct: 598 AIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLS 419
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 418 IREGIEIIV 392
Score = 109 bits (233), Expect(2) = 2e-024
Identities = 50/70 (71%), Positives = 55/70 (78%)
Frame = -2 / +3
Query: 212 QTTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAY 33
+T I IPSRID+ GL EFTRNISP+YR FVGT TLH+SSS LS+*R TVDVM P AY
Sbjct: 390 ETMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL*RITVDVMKPKAY 569
Query: 32 SPIRG*RIIA 3
SP RG* IIA
Sbjct: 570 SPTRG**IIA 599
Score = 46.4 bits (95), Expect(2) = 4e-038
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRMT* 497
EIIVSGGMTMPQ+I+ +E + +++ I LNRM *
Sbjct: 403 EIIVSGGMTMPQMISPVERVVHQNEGIPLNRMV* 302
Score = 26.3 bits (51), Expect(2) = 2e-024
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 448 SSDAIT*GMVIPPETIISAETK 383
S+ I G+VIPPET+IS ++
Sbjct: 351 STGEIICGIVIPPETMISIPSR 416
>gb|CV269592.1|CV269592 WS0208.B21_K22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_K22 3', mRNA sequence
Length = 745
Score = 135 bits (289), Expect(2) = 4e-038
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AII HPR+GEYAFGFITSTV+LQ D DEELCSV+VPTNHLYIGDIFLVNS RPNLS
Sbjct: 598 AIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLS 419
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 418 IREGIEIIV 392
Score = 109 bits (233), Expect(2) = 2e-024
Identities = 50/70 (71%), Positives = 55/70 (78%)
Frame = -2 / +3
Query: 212 QTTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAY 33
+T I IPSRID+ GL EFTRNISP+YR FVGT TLH+SSS LS+*R TVDVM P AY
Sbjct: 390 ETMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL*RITVDVMKPKAY 569
Query: 32 SPIRG*RIIA 3
SP RG* IIA
Sbjct: 570 SPTRG**IIA 599
Score = 46.4 bits (95), Expect(2) = 4e-038
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRMT* 497
EIIVSGGMTMPQ+I+ +E + +++ I LNRM *
Sbjct: 403 EIIVSGGMTMPQMISPVERVVHQNEGIPLNRMV* 302
Score = 26.3 bits (51), Expect(2) = 2e-024
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 448 SSDAIT*GMVIPPETIISAETK 383
S+ I G+VIPPET+IS ++
Sbjct: 351 STGEIICGIVIPPETMISIPSR 416
>gb|DN488101.1|DN488101 R032D11.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone V017D11 3', mRNA sequence
Length = 765
Score = 135 bits (289), Expect(2) = 4e-038
Identities = 55/69 (79%), Positives = 60/69 (86%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AII HPR+GEYAFGFITSTV+LQ D DEELCSV+VPTNHLYIGDIFLVNS RPNLS
Sbjct: 567 AIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLS 388
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 387 IREGIEIIV 361
Score = 109 bits (233), Expect(2) = 2e-024
Identities = 50/70 (71%), Positives = 55/70 (78%)
Frame = -2 / +2
Query: 212 QTTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAY 33
+T I IPSRID+ GL EFTRNISP+YR FVGT TLH+SSS LS+*R TVDVM P AY
Sbjct: 359 ETMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL*RITVDVMKPKAY 538
Query: 32 SPIRG*RIIA 3
SP RG* IIA
Sbjct: 539 SPTRG**IIA 568
Score = 46.4 bits (95), Expect(2) = 4e-038
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRMT* 497
EIIVSGGMTMPQ+I+ +E + +++ I LNRM *
Sbjct: 372 EIIVSGGMTMPQMISPVERVVHQNEGIPLNRMV* 271
Score = 26.3 bits (51), Expect(2) = 2e-024
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3 / +2
Query: 448 SSDAIT*GMVIPPETIISAETK 383
S+ I G+VIPPET+IS ++
Sbjct: 320 STGEIICGIVIPPETMISIPSR 385
>gb|DN490693.1|DN490693 UL76PH09.3pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PH09 3',
mRNA sequence
Length = 715
Score = 135 bits (289), Expect(2) = 2e-037
Identities = 55/69 (79%), Positives = 61/69 (88%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGD+FLVNS RPNLS
Sbjct: 574 AIIRHPRHGEYAFGFITSSLVLQRENGDEELCSVYVPTNHLYIGDVFLVNSEEIIRPNLS 395
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 394 IREGIEIIV 368
Score = 105 bits (223), Expect = 7e-022
Identities = 48/70 (68%), Positives = 52/70 (74%)
Frame = -2 / +3
Query: 212 QTTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAY 33
+T I +PSRIDK GL E TRN SPMYR VGT TLH+SSSP S+*RT DVM PNAY
Sbjct: 366 ETMISMPSRIDKFGLMISSELTRNTSPMYRWLVGT*TLHNSSSPFSL*RTKDDVMKPNAY 545
Query: 32 SPIRG*RIIA 3
SP RG RIIA
Sbjct: 546 SP*RGCRIIA 575
Score = 44.1 bits (90), Expect(2) = 2e-037
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRMT*CKT 506
EIIVS GMTMPQV++ +E +P S + LNR+ * +T
Sbjct: 379 EIIVSIGMTMPQVLSPIERIPHPSNRLPLNRV**SET 269
>gb|CV275864.1|CV275864 WS0177.B21_O02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0177_O02 3', mRNA sequence
Length = 816
Score = 135 bits (289), Expect(2) = 4e-037
Identities = 55/69 (79%), Positives = 61/69 (88%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR GEYAFGFITS++VLQ + GDEELCSVYVPTNHLYIGD+FLVNS RPNLS
Sbjct: 704 AIIRHPRHGEYAFGFITSSLVLQRENGDEELCSVYVPTNHLYIGDVFLVNSEEIIRPNLS 525
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 524 IREGIEIIV 498
Score = 102 bits (218), Expect(2) = 1e-021
Identities = 47/70 (67%), Positives = 51/70 (72%)
Frame = -2 / +1
Query: 212 QTTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAY 33
+T I +PSRIDK GL E TRN SPMYR VGT TLH+SSSP S+ RT DVM PNAY
Sbjct: 496 ETMISMPSRIDKFGLMISSELTRNTSPMYRWLVGT*TLHNSSSPFSLWRTKDDVMKPNAY 675
Query: 32 SPIRG*RIIA 3
SP RG RIIA
Sbjct: 676 SP*RGCRIIA 705
Score = 43.2 bits (88), Expect(2) = 4e-037
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3 / -2
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRM 491
EIIVS GMTMPQV++ +E +P S + LNR+
Sbjct: 509 EIIVSIGMTMPQVLSPIERIPHPSNRLPLNRV 414
Score = 23.5 bits (45), Expect(2) = 1e-021
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +3
Query: 1040 FFFFFWS 1020
FFFFFWS
Sbjct: 3 FFFFFWS 23
>gb|DT520899.1|DT520899 WS02448.B21_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N17 3', mRNA sequence
Length = 871
Score = 132 bits (283), Expect(2) = 1e-033
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V+LQ G+EELC VYVPTNHLYIGDIFLVN+ RPNLS
Sbjct: 502 AIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNHLYIGDIFLVNTKDVIRPNLS 323
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 322 VREGIEIVV 296
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 307 EIVVSGGMSMPQILSTLD 254
>gb|CV242270.1|CV242270 WS02514.B21.1_J18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J18 3', mRNA sequence
Length = 874
Score = 132 bits (283), Expect(2) = 1e-033
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V+LQ G+EELC VYVPTNHLYIGDIFLVN+ RPNLS
Sbjct: 496 AIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNHLYIGDIFLVNTKDVIRPNLS 317
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 316 VREGIEIVV 290
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 301 EIVVSGGMSMPQILSTLD 248
>gb|DT520901.1|DT520901 WS02448.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N19 3', mRNA sequence
Length = 876
Score = 132 bits (283), Expect(2) = 1e-033
Identities = 54/69 (78%), Positives = 60/69 (86%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V+LQ G+EELC VYVPTNHLYIGDIFLVN+ RPNLS
Sbjct: 503 AIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNHLYIGDIFLVNTKDVIRPNLS 324
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 323 VREGIEIVV 297
Score = 100 bits (212), Expect(2) = 9e-021
Identities = 46/69 (66%), Positives = 51/69 (73%)
Frame = -2 / +1
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
TTI IPSR ++LGL TRNISPMYR*FVGTYT H+SSSP R T +VMNP AYS
Sbjct: 298 TTISIPSRTERLGLITSLVLTRNISPMYR*FVGTYTQHNSSSPE*FWRMTDEVMNPKAYS 477
Query: 29 PIRG*RIIA 3
PIRG I+A
Sbjct: 478 PIRGCLIMA 504
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / -2
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 308 EIVVSGGMSMPQILSTLD 255
Score = 23.5 bits (45), Expect(2) = 9e-021
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3 / +3
Query: 1039 FFFFSGQSVVCSLCNVRCYTS 977
FFFF + N +CYTS
Sbjct: 3 FFFFFSSKY*IYILNNKCYTS 65
>gb|DT470091.1|DT470091 WS01919.C21_N14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_N14 3', mRNA sequence
Length = 624
Score = 130 bits (278), Expect(2) = 4e-033
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITSTV LQ G+EELC VYVPTNHLYIGDIFLV + RPNLS
Sbjct: 597 AIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNHLYIGDIFLVTTKDVIRPNLS 418
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 417 VREGIEIVV 391
Score = 34.5 bits (69), Expect(2) = 4e-033
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQV+++L+
Sbjct: 402 EIVVSGGMSMPQVLSTLD 349
>gb|DT513443.1|DT513443 WS02422.B21_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 3', mRNA sequence
Length = 817
Score = 130 bits (278), Expect(2) = 5e-033
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITSTV LQ G+EELC VYVPTNHLYIGDIFLV + RPNLS
Sbjct: 592 AIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNHLYIGDIFLVTTKDVIRPNLS 413
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 412 VREGIEIVV 386
Score = 34.5 bits (69), Expect(2) = 5e-033
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQV+++L+
Sbjct: 397 EIVVSGGMSMPQVLSTLD 344
>gb|DT488257.1|DT488257 WS02535.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_O22 3', mRNA sequence
Length = 866
Score = 130 bits (278), Expect(2) = 5e-033
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITSTV LQ G+EELC VYVPTNHLYIGDIFLV + RPNLS
Sbjct: 591 AIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNHLYIGDIFLVTTKDVIRPNLS 412
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 411 VREGIEIVV 385
Score = 34.5 bits (69), Expect(2) = 5e-033
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQV+++L+
Sbjct: 396 EIVVSGGMSMPQVLSTLD 343
>gb|DT508835.1|DT508835 WS02422.BR_B02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B02 5', mRNA sequence
Length = 919
Score = 130 bits (278), Expect(2) = 5e-033
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITSTV LQ G+EELC VYVPTNHLYIGDIFLV + RPNLS
Sbjct: 521 AIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNHLYIGDIFLVTTKDVIRPNLS 700
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 701 VREGIEIVV 727
Score = 34.5 bits (69), Expect(2) = 5e-033
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = +3 / +2
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQV+++L+
Sbjct: 716 EIVVSGGMSMPQVLSTLD 769
>gb|CN520269.1|CN520269 GQ0107.B3_N05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_N05 5', mRNA sequence
Length = 772
Score = 133 bits (285), Expect = 2e-030
Identities = 54/68 (79%), Positives = 59/68 (86%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AII HPR+GEYAFGFITSTV+LQ D DEELCSV+VPTNHLYIGDIFLVNS RPNLS
Sbjct: 513 AIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLS 692
Query: 184 IREGIGMV 207
IREGI ++
Sbjct: 693 IREGIEII 716
Score = 107 bits (228), Expect = 1e-022
Identities = 49/70 (70%), Positives = 54/70 (77%)
Frame = -2 / -1
Query: 212 QTTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAY 33
+ I IPSRID+ GL EFTRNISP+YR FVGT TLH+SSS LS+*R TVDVM P AY
Sbjct: 721 EXMISIPSRIDRFGLIMSLEFTRNISPIYRWFVGTKTLHNSSSSLSL*RITVDVMKPKAY 542
Query: 32 SPIRG*RIIA 3
SP RG* IIA
Sbjct: 541 SPTRG**IIA 512
>gb|CV235386.1|CV235386 WS01218.B21_O19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_O19 3', mRNA sequence
Length = 722
Score = 122 bits (260), Expect(2) = 4e-029
Identities = 49/69 (71%), Positives = 57/69 (82%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR GEYAFGFITS V+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 625 AIIRHPRHGEYAFGFITSIVILRGSMGAEELCCVYVPTNHLYLGDIFLISSKDILRPNLS 446
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 445 VREGIEIVI 419
Score = 29.5 bits (58), Expect(2) = 4e-029
Identities = 8/18 (44%), Positives = 17/18 (94%)
Frame = +3 / -2
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM++PQ++ +++
Sbjct: 430 EIVISGGMSIPQILNTMD 377
>gb|DT491616.1|DT491616 WS02548.C21_E07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_E07 3', mRNA sequence
Length = 834
Score = 122 bits (260), Expect(2) = 4e-029
Identities = 49/69 (71%), Positives = 57/69 (82%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR GEYAFGFITS V+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 621 AIIRHPRHGEYAFGFITSIVILRGSMGAEELCCVYVPTNHLYLGDIFLISSKDILRPNLS 442
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 441 VREGIEIVI 415
Score = 29.5 bits (58), Expect(2) = 4e-029
Identities = 8/18 (44%), Positives = 17/18 (94%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM++PQ++ +++
Sbjct: 426 EIVISGGMSIPQILNTMD 373
>gb|DT520719.1|DT520719 WS02448.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_F15 3', mRNA sequence
Length = 874
Score = 122 bits (260), Expect(2) = 5e-029
Identities = 49/69 (71%), Positives = 57/69 (82%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR GEYAFGFITS V+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 655 AIIRHPRHGEYAFGFITSIVILRGSMGAEELCCVYVPTNHLYLGDIFLISSKDILRPNLS 476
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 475 VREGIEIVI 449
Score = 29.5 bits (58), Expect(2) = 5e-029
Identities = 8/18 (44%), Positives = 17/18 (94%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI++SGGM++PQ++ +++
Sbjct: 460 EIVISGGMSIPQILNTMD 407
>gb|BU867805.1|BU867805 M104E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 734
Score = 127 bits (271), Expect = 2e-028
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITSTV LQ G+E LC VYVPTNHLYIGDIFLV + RPNLS
Sbjct: 512 AIIRHPRIGEYAFGFITSTVTLQNYSGEEVLCCVYVPTNHLYIGDIFLVTTKDVIRPNLS 691
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 692 VREGIEIVV 718
>gb|CV252774.1|CV252774 PX0015.B21_O23 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_O23 3', mRNA sequence
Length = 638
Score = 104 bits (221), Expect(2) = 6e-028
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = +1 / -1
Query: 46 FITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMVV 210
FITS++VLQ + GDEELCSVYVPTNHLYIGD+FLVNS RPNLSIREGI ++V
Sbjct: 629 FITSSLVLQRENGDEELCSVYVPTNHLYIGDVFLVNSEEIIRPNLSIREGIEIIV 465
Score = 43.2 bits (88), Expect(2) = 6e-028
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRM 491
EIIVS GMTMPQV++ +E +P S + LNR+
Sbjct: 476 EIIVSIGMTMPQVLSPIERIPHPSNRLPLNRV 381
>gb|BP933938.1|BP933938 BP933938 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-058_G12.r 3', mRNA sequence
Length = 568
Score = 82.6 bits (174), Expect(2) = 1e-022
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = +1 / -1
Query: 76 DKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMVV 210
D DEELCSV+ PTNHLYIGDIFLVNS RPNLSIREGI ++V
Sbjct: 565 DNEDEELCSVFGPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIV 431
Score = 46.4 bits (95), Expect(2) = 1e-022
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRMT* 497
EIIVSGGMTMPQ+I+ +E + +++ I LNRM *
Sbjct: 442 EIIVSGGMTMPQMISPVERVVHQNEGIPLNRMV* 341
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 560,628,052
Number of Sequences: 369679
Number of extensions: 8697073
Number of successful extensions: 119669
Number of sequences better than 1.0e-020: 21
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 14125500993
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)