TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419417.2.5
(733 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN488992.1|DN488992 S066G12.3pR Populus imbibed seed cDN... 199 2e-050
gb|DN485248.1|DN485248 M122A11.3pR Populus female catkins c... 122 2e-036
gb|CV274297.1|CV274297 WS0172.B21_N05 PTxD-NR-A-8 Populus t... 148 3e-035
gb|CN520293.1|CN520293 GQ0108.B3_O18 GQ010 Populus trichoca... 116 2e-034
gb|DN498729.1|DN498729 S066G12.5pR Populus imbibed seed cDN... 144 4e-034
gb|BU866443.1|BU866443 S066G12 Populus imbibed seed cDNA li... 142 2e-033
gb|CX174182.1|CX174182 C09_69-41_05.ab1 leaf inoculated wit... 113 5e-033
gb|CX173794.1|CX173794 G02_69-78_14.ab1 leaf inoculated wit... 113 5e-033
gb|CK090371.1|CK090371 C092P56.3pR Populus strain T89 leave... 84 1e-029
gb|CV276879.1|CV276879 WS0142.B21_A18 PTxD-IL-A-5 Populus t... 97 1e-029
gb|DT514016.1|DT514016 WS02423.B21_K04 PTxD-ICC-N-A-14 Popu... 97 1e-029
gb|CV276936.1|CV276936 WS0142.B21_D09 PTxD-IL-A-5 Populus t... 97 1e-029
gb|CK090495.1|CK090495 F008P84.3pR Populus flower cDNA libr... 97 1e-029
gb|CV271153.1|CV271153 WS0153.B21_O23 PTxN-IB-A-6 Populus t... 97 2e-029
gb|BP932598.1|BP932598 BP932598 full-length enriched poplar... 84 2e-029
gb|CV130609.1|CV130609 B9SP06h03 Populus stem seasonal libr... 97 4e-029
gb|BU835778.1|BU835778 T078E10 Populus apical shoot cDNA li... 86 1e-028
gb|CX175295.1|CX175295 C05_69-97_05.ab1 leaf inoculated wit... 94 2e-027
gb|CX172845.1|CX172845 B09_69-15_03.ab1 leaf inoculated wit... 115 4e-026
gb|BP933409.1|BP933409 BP933409 full-length enriched poplar... 84 9e-026
gb|BU816643.1|BU816643 N069F11 Populus bark cDNA library Po... 97 4e-025
gb|CV258719.1|CV258719 WS0201.B21_F08 PTxN-IB-N-A-11 Populu... 90 6e-025
gb|CV273187.1|CV273187 WS0171.B21_P05 PTxD-NR-A-8 Populus t... 90 8e-025
gb|CX654220.1|CX654220 PO02015A05 Poplar SC cDNA library Po... 86 3e-024
gb|CV261973.1|CV261973 WS02018.B21_E17 PTxN-IB-N-A-11 Popul... 70 1e-023
gb|BU880315.1|BU880315 UM44TC09 Populus flower cDNA library... 70 1e-023
gb|CV271536.1|CV271536 WS0154.B21_P15 PTxN-IB-A-6 Populus t... 70 1e-023
gb|BU888888.1|BU888888 P013G12 Populus petioles cDNA librar... 71 1e-023
gb|CK087245.1|CK087245 A001P37.3pR Hybrid aspen plasmid lib... 70 2e-023
gb|DT508271.1|DT508271 WS02420.BR_I08 PTxD-ICC-N-A-14 Popul... 70 2e-023
gb|DT512885.1|DT512885 WS02420.B21_I08 PTxD-ICC-N-A-14 Popu... 70 2e-023
gb|CV254083.1|CV254083 WS0223.B21_P11 PTxD-ICC-A-12 Populus... 70 2e-023
gb|CA927840.1|CA927840 MTU6TR.P13.E11 Aspen root cDNA Libra... 86 3e-023
gb|DN488210.1|DN488210 R041F03.3pR Populus root cDNA librar... 72 3e-023
gb|CX174097.1|CX174097 D08_69-100_08.ab1 leaf inoculated wi... 70 5e-023
gb|CN523249.1|CN523249 GQ015M01.B3_E15 GQ015 Populus tricho... 73 2e-022
gb|BU897636.1|BU897636 X060G07 Populus wood cDNA library Po... 105 4e-022
gb|DT522014.1|DT522014 WS02035.B21_N05 PTxN-IB-N-A-11 Popul... 70 6e-021
>gb|DN488992.1|DN488992 S066G12.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S066G12 3', mRNA sequence
Length = 824
Score = 199 bits (429), Expect = 2e-050
Identities = 73/111 (65%), Positives = 92/111 (82%)
Frame = +2 / -3
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDG 187
KL+ YVK++Y +P V ITENGMDD N+PF S+ AL+D KRI+YH YL+N++A+I++D
Sbjct: 468 KLLKYVKDKYGNPPVVITENGMDDLNTPFISLSKALQDDKRIEYHRDYLSNISAAIRQDN 289
Query: 188 CDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
CDVRGYFAWSLLDNWEW +GYT RFGLYFVDY++NL R PK S +WFK+ L
Sbjct: 288 CDVRGYFAWSLLDNWEWNSGYTVRFGLYFVDYRNNLTRVPKASAEWFKSTL 136
>gb|DN485248.1|DN485248 M122A11.3pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone M122A11 3', mRNA sequence
Length = 821
Score = 122 bits (262), Expect(2) = 2e-036
Identities = 44/82 (53%), Positives = 64/82 (78%)
Frame = +2 / -1
Query: 95 TSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYF 274
+S+++AL D+ R +Y+ +NV SI + G DV+G+FAWS LD++EW +GY SRFGL++
Sbjct: 677 SSLEEALNDAIREQYYKDIFHNVLRSINDHGVDVKGFFAWSFLDDFEWGSGYGSRFGLFY 498
Query: 275 VDYKDNLKRYPKNSVQWFKTLL 340
+DY++NLKRY KNSV+WFK L
Sbjct: 497 IDYENNLKRYAKNSVKWFKQFL 432
Score = 49.6 bits (102), Expect(2) = 2e-036
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2 / -1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
R L+NY+K+ Y +P +YITENG+DD NS
Sbjct: 761 RHLLNYIKDAYENPPIYITENGVDDVNS 678
>gb|CV274297.1|CV274297 WS0172.B21_N05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_N05 3', mRNA sequence
Length = 878
Score = 148 bits (318), Expect = 3e-035
Identities = 57/96 (59%), Positives = 74/96 (77%)
Frame = +2 / -2
Query: 53 YITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNW 232
YITENG+DD N+ +S+++AL D R K + +L NV SI E G DV+G+FAWSL+DN+
Sbjct: 694 YITENGVDDVNNNASSLKEALNDPIREKSYKDHLKNVLRSINEHGVDVKGFFAWSLMDNF 515
Query: 233 EWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
EW +GY RFGLY+VDYK++LKRYPK SV+WFK L
Sbjct: 514 EWGSGYAVRFGLYYVDYKNDLKRYPKQSVKWFKQFL 407
>gb|CN520293.1|CN520293 GQ0108.B3_O18 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_O18 5', mRNA sequence
Length = 789
Score = 116 bits (249), Expect(2) = 2e-034
Identities = 46/92 (50%), Positives = 59/92 (64%)
Frame = +2 / -1
Query: 74 DDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNWEWAAGYT 253
D N S++ AL D+ R+KY++ +L NV SI+ G V+GYFAW+ D++EW GYT
Sbjct: 561 DFNNGSQISLKTALNDTCRVKYYHDHLKNVLRSIENYGTIVKGYFAWTFADDFEWPDGYT 382
Query: 254 SRFGLYFVDYKDNLKRYPKNSVQWFKTLLSSS 349
RFGLY+ DY NL RYPK SV WF L S
Sbjct: 381 IRFGLYYTDYLHNLHRYPKRSVHWFTNFLKGS 286
Score = 49.2 bits (101), Expect(2) = 2e-034
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2 / -1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
R L+NY K+RY +PT+YITENG+ D N+
Sbjct: 633 RYLLNYTKDRYRNPTIYITENGVSDFNN 550
>gb|DN498729.1|DN498729 S066G12.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S066G12 5', mRNA sequence
Length = 774
Score = 144 bits (310), Expect = 4e-034
Identities = 52/80 (65%), Positives = 67/80 (83%)
Frame = +2 / +3
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDG 187
KL+ YVK++Y +P V ITENGMDD N+PF S+ AL+D KRI+YH YL+N++A+I++D
Sbjct: 534 KLLKYVKDKYGNPPVVITENGMDDLNTPFISLSKALQDDKRIEYHRDYLSNISAAIRQDN 713
Query: 188 CDVRGYFAWSLLDNWEWAAG 247
CDVRGYFAWSLLDNWEW +G
Sbjct: 714 CDVRGYFAWSLLDNWEWNSG 773
>gb|BU866443.1|BU866443 S066G12 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 745
Score = 142 bits (305), Expect = 2e-033
Identities = 51/77 (66%), Positives = 65/77 (84%)
Frame = +2 / +3
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDG 187
KL+ YVK++Y +P V ITENGMDD N+PF S+ AL+D KRI+YH YL+N++A+I++D
Sbjct: 513 KLLKYVKDKYGNPPVVITENGMDDLNTPFISLSKALQDDKRIEYHRDYLSNISAAIRQDN 692
Query: 188 CDVRGYFAWSLLDNWEW 238
CDVRGYFAWSLLDNWEW
Sbjct: 693 CDVRGYFAWSLLDNWEW 743
>gb|CX174182.1|CX174182 C09_69-41_05.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 681
Score = 113 bits (242), Expect(2) = 5e-033
Identities = 45/89 (50%), Positives = 58/89 (65%)
Frame = +2 / -3
Query: 74 DDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNWEWAAGYT 253
D N S++ AL D+ R KY++ +L NV +SI+ G V+GYFAW+ D++EW GYT
Sbjct: 583 DFNNGSQISLKTALNDTCRAKYYHDHLKNVLSSIENYGTIVKGYFAWTFADDFEWPNGYT 404
Query: 254 SRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
RFGLY+ DY NL RYPK SV WF L
Sbjct: 403 IRFGLYYTDYLRNLHRYPKRSVHWFTNFL 317
Score = 47.3 bits (97), Expect(2) = 5e-033
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2 / -3
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
R L+NY K++Y +PT+YITENG+ D N+
Sbjct: 655 RYLLNYTKDQYRNPTIYITENGVSDFNN 572
>gb|CX173794.1|CX173794 G02_69-78_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 661
Score = 113 bits (242), Expect(2) = 5e-033
Identities = 45/89 (50%), Positives = 58/89 (65%)
Frame = +2 / -2
Query: 74 DDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNWEWAAGYT 253
D N S++ AL D+ R KY++ +L NV +SI+ G V+GYFAW+ D++EW GYT
Sbjct: 564 DFNNGSQISLKTALNDTCRAKYYHDHLKNVLSSIENYGTIVKGYFAWTFADDFEWPNGYT 385
Query: 254 SRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
RFGLY+ DY NL RYPK SV WF L
Sbjct: 384 IRFGLYYTDYLRNLHRYPKRSVHWFTNFL 298
Score = 47.3 bits (97), Expect(2) = 5e-033
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2 / -2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
R L+NY K++Y +PT+YITENG+ D N+
Sbjct: 636 RYLLNYTKDQYRNPTIYITENGVSDFNN 553
>gb|CK090371.1|CK090371 C092P56.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C092P56 3', mRNA sequence
Length = 543
Score = 84.5 bits (178), Expect(2) = 1e-029
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +2 / -1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G +V+GY+ W+ D++EW AGYT RFG+ ++D+K+NLKRY K S WFK L
Sbjct: 330 KEGANVKGYYQWAFWDDFEWDAGYTVRFGMIYIDFKNNLKRYMKYSAYWFKMFL 169
Score = 65.7 bits (137), Expect(2) = 1e-029
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = +2 / -1
Query: 11 LMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
LM YV+++Y +P +YITENG+ D N+ +++ALKD RI+Y +L ++ +IKE
Sbjct: 495 LMLYVRDKYKNPPIYITENGLADANNASLPVKEALKDGLRIRYLASHLQYLSKAIKE 325
>gb|CV276879.1|CV276879 WS0142.B21_A18 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_A18 3', mRNA sequence
Length = 916
Score = 97.3 bits (206), Expect(2) = 1e-029
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 510 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLSRHPKSSAYWFMRFL 349
Score = 52.4 bits (108), Expect(2) = 1e-029
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +2 / -2
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
RK++NY+ ++YN+PT+Y+TENGMDD
Sbjct: 678 RKVLNYLAQKYNNPTIYVTENGMDD 604
>gb|DT514016.1|DT514016 WS02423.B21_K04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_K04 3', mRNA sequence
Length = 910
Score = 97.3 bits (206), Expect(2) = 1e-029
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / -3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 341 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLSRHPKSSAYWFMRFL 180
Score = 52.4 bits (108), Expect(2) = 1e-029
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +2 / -3
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
RK++NY+ ++YN+PT+Y+TENGMDD
Sbjct: 509 RKVLNYLAQKYNNPTIYVTENGMDD 435
>gb|CV276936.1|CV276936 WS0142.B21_D09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_D09 3', mRNA sequence
Length = 885
Score = 97.3 bits (206), Expect(2) = 1e-029
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / -3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 487 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLSRHPKSSAYWFMRFL 326
Score = 52.4 bits (108), Expect(2) = 1e-029
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +2 / -3
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
RK++NY+ ++YN+PT+Y+TENGMDD
Sbjct: 655 RKVLNYLAQKYNNPTIYVTENGMDD 581
>gb|CK090495.1|CK090495 F008P84.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F008P84 3', mRNA sequence
Length = 793
Score = 97.3 bits (206), Expect(2) = 1e-029
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 435 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLSRHPKSSAYWFMRFL 274
Score = 52.4 bits (108), Expect(2) = 1e-029
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +2 / -2
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
RK++NY+ ++YN+PT+Y+TENGMDD
Sbjct: 603 RKVLNYLAQKYNNPTIYVTENGMDD 529
>gb|CV271153.1|CV271153 WS0153.B21_O23 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_O23 3', mRNA sequence
Length = 914
Score = 96.8 bits (205), Expect(2) = 2e-029
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / -1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 455 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLARHPKSSAYWFMRFL 294
Score = 52.4 bits (108), Expect(2) = 2e-029
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +2 / -1
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
RK++NY+ ++YN+PT+Y+TENGMDD
Sbjct: 623 RKVLNYLAQKYNNPTIYVTENGMDD 549
>gb|BP932598.1|BP932598 BP932598 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-038_A02.r 3', mRNA sequence
Length = 644
Score = 84.5 bits (178), Expect(2) = 2e-029
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G +V+GY+ W+ D++EW AGYT RFG+ ++D+K+NLKRY K S WFK L
Sbjct: 415 KEGANVKGYYQWAFWDDFEWDAGYTVRFGMIYIDFKNNLKRYMKYSAYWFKMFL 254
Score = 64.8 bits (135), Expect(2) = 2e-029
Identities = 25/57 (43%), Positives = 40/57 (70%)
Frame = +2 / -2
Query: 11 LMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
LM YV+++Y +P +YITENG+ D N+ +++ALKD RI+Y +L ++ +IKE
Sbjct: 580 LMLYVRDKYKNPPLYITENGLADANNASLPVKEALKDGLRIRYLASHLQYLSKAIKE 410
>gb|CV130609.1|CV130609 B9SP06h03 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 742
Score = 96.8 bits (205), Expect(2) = 4e-029
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 341 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLARHPKSSAYWFMRFL 502
Score = 51.5 bits (106), Expect(2) = 4e-029
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDD 79
RK++NY+ +YN+PT+Y+TENGMDD
Sbjct: 173 RKVLNYLARKYNNPTIYVTENGMDD 247
>gb|BU835778.1|BU835778 T078E10 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 522
Score = 85.8 bits (181), Expect(2) = 1e-028
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = +2 / +3
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G +V+GY+ W+L D++EW AGYT RFG+ ++D+K+NLKRY K S WFK L
Sbjct: 162 EGANVKGYYQWALWDDFEWDAGYTVRFGMIYIDFKNNLKRYMKYSAYWFKMFL 320
Score = 60.6 bits (126), Expect(2) = 1e-028
Identities = 22/54 (40%), Positives = 37/54 (68%)
Frame = +2 / +3
Query: 20 YVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
YV+++Y +P +YITENG+ D N+ +++ALKD RI+Y +L ++ +I E
Sbjct: 3 YVRDKYKNPPIYITENGLADANNASLPVKEALKDGLRIRYLASHLQYLSKAINE 164
>gb|CX175295.1|CX175295 C05_69-97_05.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 634
Score = 93.6 bits (198), Expect(2) = 2e-027
Identities = 37/76 (48%), Positives = 50/76 (65%)
Frame = +2 / +2
Query: 74 DDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNWEWAAGYT 253
D N S++ AL D+ R+KY++ +L NV SI+ G V+GYFAW+ D++EW GYT
Sbjct: 407 DFNNGSQISLKTALNDTCRVKYYHDHLKNVLRSIENYGTIVKGYFAWTFADDFEWPDGYT 586
Query: 254 SRFGLYFVDYKDNLKR 301
RFGLY+ DY NL R
Sbjct: 587 IRFGLYYTDYLHNLHR 634
Score = 49.2 bits (101), Expect(2) = 2e-027
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
R L+NY K+RY +PT+YITENG+ D N+
Sbjct: 335 RYLLNYTKDRYRNPTIYITENGVSDFNN 418
>gb|CX172845.1|CX172845 B09_69-15_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 629
Score = 115 bits (246), Expect(2) = 4e-026
Identities = 45/89 (50%), Positives = 58/89 (65%)
Frame = +2 / +1
Query: 83 NSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGCDVRGYFAWSLLDNWEWAAGYTSRF 262
N S++ AL D+ R+KY++ +L NV SI+ G V+GYFAW+ D++EW GYT RF
Sbjct: 52 NGSQISLKTALNDTCRVKYYHDHLKNVLRSIENYGTIVKGYFAWTFADDFEWPDGYTIRF 231
Query: 263 GLYFVDYKDNLKRYPKNSVQWFKTLLSSS 349
GLY+ DY NL RYPK SV WF L S
Sbjct: 232 GLYYTDYLHNLHRYPKRSVHWFTNFLKGS 318
Score = 22.6 bits (43), Expect(2) = 4e-026
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 50 VYITENGMDD 79
+YITENG+ D
Sbjct: 17 IYITENGVSD 46
>gb|BP933409.1|BP933409 BP933409 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-051_A15.r 3', mRNA sequence
Length = 564
Score = 84.5 bits (178), Expect(2) = 9e-026
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
++G +V+GY+ W+ D++EW AGYT RFG+ ++D+K+NLKRY K S WFK L
Sbjct: 413 KEGANVKGYYQWAFWDDFEWDAGYTVRFGMIYIDFKNNLKRYMKYSAYWFKMFL 252
Score = 52.4 bits (108), Expect(2) = 9e-026
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +2 / -2
Query: 26 KERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
+++Y +P + ITENG+ D N+ +++ALKD RI+Y +L ++ +IKE
Sbjct: 563 RDKYKNPPLDITENGLADANNASLPVKEALKDGLRIRYLASHLQYLSKAIKE 408
>gb|BU816643.1|BU816643 N069F11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 668
Score = 96.8 bits (205), Expect(3) = 4e-025
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+DG V+GYFAWSLLDN+EWA GYT RFGL +VDYK+ L R+PK+S WF L
Sbjct: 207 KDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLSRHPKSSAYWFLRFL 368
Score = 32.7 bits (65), Expect(3) = 4e-025
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +2 / +3
Query: 41 SPTVYITENGMDD 79
+PT+Y+TENGMDD
Sbjct: 75 NPTIYVTENGMDD 113
Score = 22.6 bits (43), Expect(3) = 4e-025
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 5 RKLMNYVKERYN 40
RK++NY+ ++YN
Sbjct: 38 RKVLNYLAQKYN 73
>gb|CV258719.1|CV258719 WS0201.B21_F08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_F08 3', mRNA sequence
Length = 879
Score = 89.5 bits (189), Expect(2) = 6e-025
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2 / -1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G V+GYFAWS LD++EW +GYT RFG+ ++DYK+ LKR PK S +WFK L
Sbjct: 414 EGVKVKGYFAWSFLDDFEWNSGYTVRFGIIYIDYKNGLKRIPKLSARWFKNFL 256
Score = 44.6 bits (91), Expect(2) = 6e-025
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2 / -1
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
RKL+ Y K++YN P +YITENG+ + N+
Sbjct: 591 RKLLLYTKKKYNDPVIYITENGVSEVNN 508
>gb|CV273187.1|CV273187 WS0171.B21_P05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_P05 3', mRNA sequence
Length = 600
Score = 89.5 bits (189), Expect(2) = 8e-025
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +2 / -2
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+G V+GYFAWS LD++EW +GYT RFG+ ++DYK+ LKR PK S +WFK L
Sbjct: 392 EGVKVKGYFAWSFLDDFEWNSGYTVRFGIIYIDYKNGLKRIPKLSARWFKNFL 234
Score = 44.1 bits (90), Expect(2) = 8e-025
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2 / -2
Query: 5 RKLMNYVKERYNSPTVYITENGMDDGNS 88
RKL+ Y K +YN P +YITENG+ + N+
Sbjct: 569 RKLLLYTKRKYNDPVIYITENGVSEVNN 486
>gb|CX654220.1|CX654220 PO02015A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02015A05 5', mRNA sequence
Length = 614
Score = 86.3 bits (182), Expect(3) = 3e-024
Identities = 30/54 (55%), Positives = 43/54 (79%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+ G +V+ Y+ WS LD++EW AGYT RFG+ +VD+K+NLKRY K+S +WF+ LL
Sbjct: 307 QKGANVKAYYIWSFLDDFEWDAGYTVRFGVTYVDFKNNLKRYLKSSARWFQLLL 146
Score = 33.6 bits (67), Expect(3) = 3e-024
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2 / -2
Query: 20 YVKERYNSPTVYITENGMDDGNS 88
Y+K+ Y +P V+ITENG+ + S
Sbjct: 457 YIKDNYKNPPVFITENGIAENAS 389
Score = 29.5 bits (58), Expect(3) = 3e-024
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2 / -2
Query: 110 ALKDSKRIKYHNGYLNNVAASIKE 181
ALKDS RI+YH+ +L+ + +I++
Sbjct: 373 ALKDSWRIRYHSAHLSYLLKAIQK 302
>gb|CV261973.1|CV261973 WS02018.B21_E17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_E17 3', mRNA sequence
Length = 832
Score = 69.8 bits (146), Expect(3) = 1e-023
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2 / -3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
++G ++ GYFAWSLLDN+EW +GYTSRFG+ +VDY
Sbjct: 665 DEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDY 561
Score = 42.8 bits (87), Expect(3) = 1e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / -3
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 827 KAVMYIKERYGNPTIILSENGMDD 756
Score = 34.5 bits (69), Expect(3) = 1e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / -3
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 557 NLKRYPKMSAYWFKKLL 507
>gb|BU880315.1|BU880315 UM44TC09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 617
Score = 69.8 bits (146), Expect(3) = 1e-023
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
++G ++ GYFAWSLLDN+EW +GYTSRFG+ +VDY
Sbjct: 417 DEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDY 521
Score = 42.8 bits (87), Expect(3) = 1e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 255 KAVMYIKERYGNPTIILSENGMDD 326
Score = 34.5 bits (69), Expect(3) = 1e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / +3
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 525 NLKRYPKMSAYWFKKLL 575
>gb|CV271536.1|CV271536 WS0154.B21_P15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_P15 3', mRNA sequence
Length = 479
Score = 69.8 bits (146), Expect(3) = 1e-023
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
++G ++ GYFAWSLLDN+EW +GYTSRFG+ +VDY
Sbjct: 313 DEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDY 209
Score = 42.8 bits (87), Expect(3) = 1e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 475 KAVMYIKERYGNPTIILSENGMDD 404
Score = 34.5 bits (69), Expect(3) = 1e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 205 NLKRYPKMSAYWFKKLL 155
>gb|BU888888.1|BU888888 P013G12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 476
Score = 70.7 bits (148), Expect(3) = 1e-023
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +2 / +1
Query: 182 DGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKD 289
DG ++ GYFAWSLLDN+EW +GYTSRFG+ +VDY +
Sbjct: 223 DGANLVGYFAWSLLDNFEWTSGYTSRFGIVYVDYSN 330
Score = 41.8 bits (85), Expect(3) = 1e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / +1
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 58 KAVMYIKERYGNPTMILSENGMDD 129
Score = 34.5 bits (69), Expect(3) = 1e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / +1
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 328 NLKRYPKMSANWFKHLL 378
>gb|CK087245.1|CK087245 A001P37.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A001P37 3', mRNA sequence
Length = 816
Score = 70.3 bits (147), Expect(3) = 2e-023
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKD 289
+DG ++ GYFAWSLLDN+EW GYTSRFG+ +VDY +
Sbjct: 269 DDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 159
Score = 41.8 bits (85), Expect(3) = 2e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 431 KAVMYIKERYGNPTMILSENGMDD 360
Score = 34.5 bits (69), Expect(3) = 2e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 161 NLKRYPKMSANWFKHLL 111
>gb|DT508271.1|DT508271 WS02420.BR_I08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_I08 5', mRNA sequence
Length = 673
Score = 70.3 bits (147), Expect(3) = 2e-023
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +2 / +2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKD 289
+DG ++ GYFAWSLLDN+EW GYTSRFG+ +VDY +
Sbjct: 404 DDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 514
Score = 41.8 bits (85), Expect(3) = 2e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 242 KAVMYIKERYGNPTMILSENGMDD 313
Score = 34.5 bits (69), Expect(3) = 2e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / +2
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 512 NLKRYPKMSANWFKHLL 562
>gb|DT512885.1|DT512885 WS02420.B21_I08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_I08 3', mRNA sequence
Length = 673
Score = 70.3 bits (147), Expect(3) = 2e-023
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKD 289
+DG ++ GYFAWSLLDN+EW GYTSRFG+ +VDY +
Sbjct: 270 DDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 160
Score = 41.8 bits (85), Expect(3) = 2e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 432 KAVMYIKERYGNPTMILSENGMDD 361
Score = 34.5 bits (69), Expect(3) = 2e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 162 NLKRYPKMSANWFKHLL 112
>gb|CV254083.1|CV254083 WS0223.B21_P11 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_P11 3', mRNA sequence
Length = 667
Score = 70.3 bits (147), Expect(3) = 2e-023
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +2 / -2
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKD 289
+DG ++ GYFAWSLLDN+EW GYTSRFG+ +VDY +
Sbjct: 267 DDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 157
Score = 41.8 bits (85), Expect(3) = 2e-023
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2 / -2
Query: 8 KLMNYVKERYNSPTVYITENGMDD 79
K + Y+KERY +PT+ ++ENGMDD
Sbjct: 429 KAVMYIKERYGNPTMILSENGMDD 358
Score = 34.5 bits (69), Expect(3) = 2e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / -2
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 159 NLKRYPKMSANWFKHLL 109
>gb|CA927840.1|CA927840 MTU6TR.P13.E11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 407
Score = 86.3 bits (182), Expect(3) = 3e-023
Identities = 30/54 (55%), Positives = 43/54 (79%)
Frame = +2 / -1
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLL 340
+ G +V+ Y+ WS LD++EW AGYT RFG+ +VD+K+NLKRY K+S +WF+ LL
Sbjct: 260 QKGANVKAYYIWSFLDDFEWDAGYTVRFGVTYVDFKNNLKRYLKSSARWFQLLL 99
Score = 30.4 bits (60), Expect(3) = 3e-023
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2 / -1
Query: 23 VKERYNSPTVYITENGMDDGNS 88
+K+ Y +P V+ITENG+ + S
Sbjct: 407 IKDNYKNPPVFITENGIAENAS 342
Score = 29.5 bits (58), Expect(3) = 3e-023
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2 / -1
Query: 110 ALKDSKRIKYHNGYLNNVAASIKE 181
ALKDS RI+YH+ +L+ + +I++
Sbjct: 326 ALKDSWRIRYHSAHLSYLLKAIQK 255
>gb|DN488210.1|DN488210 R041F03.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R041F03 3', mRNA sequence
Length = 842
Score = 72.1 bits (151), Expect(2) = 3e-023
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +2 / -1
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
G DVRGYFAWS LDN+EW GYT RFGLY VDY
Sbjct: 269 GADVRGYFAWSFLDNFEWTFGYTRRFGLYHVDY 171
Score = 56.1 bits (116), Expect(2) = 3e-023
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +2 / -1
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
K++ YVKERYN+ + ITENG ++ +I++ L D+ R++Y +GYL+ + ++K+
Sbjct: 443 KMVTYVKERYNNIPMIITENGYSQVSNSNGNIEEFLHDTGRVEYMSGYLDALLTAMKK 270
>gb|CX174097.1|CX174097 D08_69-100_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 443
Score = 70.3 bits (147), Expect(3) = 5e-023
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +2 / +3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKD 289
+DG ++ GYFAWSLLDN+EW GYTSRFG+ +VDY +
Sbjct: 168 DDGANMVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSN 278
Score = 40.5 bits (82), Expect(3) = 5e-023
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2 / +3
Query: 20 YVKERYNSPTVYITENGMDD 79
Y+KERY +PT+ ++ENGMDD
Sbjct: 18 YIKERYGNPTMILSENGMDD 77
Score = 34.5 bits (69), Expect(3) = 5e-023
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / +3
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 276 NLKRYPKMSANWFKHLL 326
>gb|CN523249.1|CN523249 GQ015M01.B3_E15 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_E15 5', mRNA sequence
Length = 727
Score = 73.0 bits (153), Expect(2) = 2e-022
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2 / -2
Query: 185 GCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
G DVRGYFAWSLLDN+EW +GYT RFGLY VD+
Sbjct: 471 GADVRGYFAWSLLDNFEWTSGYTIRFGLYHVDF 373
Score = 52.8 bits (109), Expect(2) = 2e-022
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +2 / -2
Query: 8 KLMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKE 181
KL+ Y K+RYN+ +YITENG + + + + LKD +R++Y + YL+ + ++++
Sbjct: 645 KLVTYXKDRYNNIPMYITENGYCEEENVNVTTKAVLKDVQRVEYMSSYLDALETAVRK 472
>gb|BU897636.1|BU897636 X060G07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 496
Score = 105 bits (223), Expect = 4e-022
Identities = 46/111 (41%), Positives = 61/111 (54%)
Frame = +2 / +2
Query: 11 LMNYVKERYNSPTVYITENGMDDGNSPFTSIQDALKDSKRIKYHNGYLNNVAASIKEDGC 190
L++Y K+ Y P +YITENG S + L D RI++H +L NV I +
Sbjct: 50 LLSYTKDNYQDPIIYITENGYSRLLDANVSDAETLNDRPRIEFHFHHLQNVIKFIDDYEV 229
Query: 191 DVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYKDNLKRYPKNSVQWFKTLLS 343
V+GYFAWS D++E+ GYT FGL ++ K NL R K S WF LS
Sbjct: 230 QVKGYFAWSFTDDFEFTDGYTVGFGLVHINRKSNLTRQMKLSASWFSECLS 382
>gb|DT522014.1|DT522014 WS02035.B21_N05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02035_N05 3', mRNA sequence
Length = 894
Score = 69.8 bits (146), Expect(3) = 6e-021
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2 / -3
Query: 179 EDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDY 283
++G ++ GYFAWSLLDN+EW +GYTSRFG+ +VDY
Sbjct: 268 DEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDY 164
Score = 37.3 bits (75), Expect(3) = 6e-021
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2 / -1
Query: 8 KLMNYVKERYNSPTVYITENGM 73
K + Y+KERY +PT+ ++ENGM
Sbjct: 555 KAVMYIKERYGNPTIILSENGM 490
Score = 34.5 bits (69), Expect(3) = 6e-021
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2 / -3
Query: 290 NLKRYPKNSVQWFKTLL 340
NLKRYPK S WFK LL
Sbjct: 160 NLKRYPKMSAYWFKKLL 110
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 265,430,551
Number of Sequences: 369679
Number of extensions: 2822280
Number of successful extensions: 26433
Number of sequences better than 1.0e-020: 40
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9278699780
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)