TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.1
(1293 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 113 7e-054
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 113 2e-052
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 113 5e-052
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 113 1e-051
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 113 3e-047
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 113 3e-044
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 112 6e-044
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 113 2e-041
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 106 1e-037
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 118 7e-035
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 100 2e-034
gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Po... 97 2e-033
gb|BU893439.1|BU893439 P077G06 Populus petioles cDNA librar... 97 1e-032
gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Po... 88 2e-032
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 101 2e-031
gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Po... 100 6e-030
gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Po... 78 3e-029
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 101 9e-025
gb|CX655588.1|CX655588 PO02036H10 Poplar SC cDNA library Po... 78 1e-023
gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Popul... 51 3e-021
gb|BU884348.1|BU884348 R009D12 Populus root cDNA library Po... 63 1e-020
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 113 bits (242), Expect(5) = 7e-054
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -1
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 407 VEYEDGDGELKSVELKQA 354
Score = 46.9 bits (96), Expect(5) = 7e-054
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1 / -1
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q PF S S G ++K G+GCG+CY+++C + + V +
Sbjct: 803 DGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVIT 624
Query: 430 NYYPVS 447
+ P S
Sbjct: 623 DQCPGS 606
Score = 45.1 bits (92), Expect(5) = 7e-054
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -1
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 156
Score = 44.1 bits (90), Expect(5) = 7e-054
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -1
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 255
Score = 36.3 bits (73), Expect(5) = 7e-054
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1 / -1
Query: 196 WQKARATWYGQPNGAGPD 249
W A ATWYG P GAG D
Sbjct: 854 WSPAGATWYGSPTGAGSD 801
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 113 bits (242), Expect(5) = 2e-052
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -3
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 639 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 460
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 459 VEYEDGDGELKSVELKQA 406
Score = 47.3 bits (97), Expect(5) = 2e-052
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1 / -3
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q PF S S G ++K G+GCG+CY+++C + + V +
Sbjct: 855 DGGACGYGNAVEQAPFFSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVIT 676
Query: 430 NYYPVS 447
+ P S
Sbjct: 675 DQCPGS 658
Score = 45.1 bits (92), Expect(5) = 2e-052
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -3
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 297 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 208
Score = 44.1 bits (90), Expect(5) = 2e-052
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -3
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 390 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 307
Score = 30.9 bits (61), Expect(5) = 2e-052
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 211 ATWYGQPNGAGPD 249
ATWYG P GAG D
Sbjct: 891 ATWYGSPTGAGSD 853
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 113 bits (242), Expect(5) = 5e-052
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -1
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 567 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 388
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 387 VEYEDGDGELKSVELKQA 334
Score = 46.9 bits (96), Expect(5) = 5e-052
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1 / -1
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q PF S S G ++K G+GCG+CY+++C + + V +
Sbjct: 783 DGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVIT 604
Query: 430 NYYPVS 447
+ P S
Sbjct: 603 DQCPGS 586
Score = 45.1 bits (92), Expect(5) = 5e-052
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -1
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 225 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 136
Score = 44.1 bits (90), Expect(5) = 5e-052
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -1
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 318 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 235
Score = 29.9 bits (59), Expect(5) = 5e-052
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1 / -1
Query: 205 ARATWYGQPNGAGPD 249
A TWYG P GAG D
Sbjct: 825 AGGTWYGSPTGAGSD 781
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 113 bits (242), Expect(5) = 1e-051
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -2
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 408
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 407 VEYEDGDGELKSVELKQA 354
Score = 46.9 bits (96), Expect(5) = 1e-051
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1 / -2
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q PF S S G ++K G+GCG+CY+++C + + V +
Sbjct: 803 DGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVIT 624
Query: 430 NYYPVS 447
+ P S
Sbjct: 623 DQCPGS 606
Score = 45.1 bits (92), Expect(5) = 1e-051
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -2
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 156
Score = 44.1 bits (90), Expect(5) = 1e-051
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -2
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 255
Score = 29.0 bits (57), Expect(5) = 1e-051
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / -2
Query: 214 TWYGQPNGAGPD 249
TWYG P GAG D
Sbjct: 836 TWYGSPTGAGSD 801
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 113 bits (242), Expect(4) = 3e-047
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -3
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 566 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 387
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 386 VEYEDGDGELKSVELKQA 333
Score = 45.1 bits (92), Expect(4) = 3e-047
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -3
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 224 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 135
Score = 44.1 bits (90), Expect(4) = 3e-047
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -3
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 317 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 234
Score = 43.2 bits (88), Expect(4) = 3e-047
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1 / -3
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q P S S G ++K G+GCG+CY+++C + + V +
Sbjct: 782 DGGACGYGNAVEQAPSSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVIT 603
Query: 430 NYYPVS 447
+ P S
Sbjct: 602 DQCPGS 585
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 113 bits (242), Expect(4) = 3e-044
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -2
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 591 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 412
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 411 VEYEDGDGELKSVELKQA 358
Score = 45.1 bits (92), Expect(4) = 3e-044
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -2
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 249 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 160
Score = 44.1 bits (90), Expect(4) = 3e-044
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -2
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 342 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 259
Score = 33.1 bits (66), Expect(4) = 3e-044
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1 / -2
Query: 334 KDGKGCGSCYKIRCRKDPSCSGRTETVIITDMNYYPVS 447
K G+GCG+CY+++C + + V + + P S
Sbjct: 723 KSGQGCGACYQVKCTSSSNAACSGNPVTVVITDQCPGS 610
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 112 bits (240), Expect(4) = 6e-044
Identities = 42/75 (56%), Positives = 58/75 (77%)
Frame = +1 / +2
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 452 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 631
Query: 631 VEYEDGDGDVVQVDL 675
VEYEDGDG++ V+L
Sbjct: 632 VEYEDGDGELKSVEL 676
Score = 46.9 bits (96), Expect(4) = 6e-044
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1 / +2
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q PF S S G ++K G+GCG+CY+++C + + V +
Sbjct: 236 DGGACGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVIT 415
Query: 430 NYYPVS 447
+ P S
Sbjct: 416 DQCPGS 433
Score = 38.6 bits (78), Expect(4) = 6e-044
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1 / +1
Query: 715 WAPMRESWGSVWRMDTNHRMQPP 783
W PM++SWG+VW++D ++ P
Sbjct: 700 WVPMQKSWGAVWKLDAGSLLRAP 768
Score = 36.3 bits (73), Expect(4) = 6e-044
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1 / +2
Query: 196 WQKARATWYGQPNGAGPD 249
W A ATWYG P GAG D
Sbjct: 185 WSPAGATWYGSPTGAGSD 238
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 113 bits (242), Expect(4) = 2e-041
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = +1 / -1
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ I+ RVPC +PG + FHV+ S+P YFA +
Sbjct: 663 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPYYFATV 484
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDG++ V+L ++
Sbjct: 483 VEYEDGDGELKSVELKQA 430
Score = 45.1 bits (92), Expect(4) = 2e-041
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -1
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 321 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 232
Score = 44.1 bits (90), Expect(4) = 2e-041
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -1
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 414 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 331
Score = 23.1 bits (44), Expect(4) = 2e-041
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 388 SCSGRTETVIITD 426
+CSG TV+ITD
Sbjct: 735 ACSGNPVTVVITD 697
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 106 bits (226), Expect(4) = 1e-037
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +1 / +2
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ IE RVPC +PG K+ FHV+ S+P YFA L
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKKVTFHVDSGSNPYYFATL 610
Query: 631 VEYEDGDGD 657
VE + GDGD
Sbjct: 611 VE*QHGDGD 637
Score = 47.3 bits (97), Expect(4) = 1e-037
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1 / +2
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRC 375
D G Q PF S+ S G ++K G+GCG+CY+++C
Sbjct: 215 DGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 36.3 bits (73), Expect(4) = 1e-037
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1 / +2
Query: 196 WQKARATWYGQPNGAGPD 249
W A ATWYG P GAG D
Sbjct: 164 WSPAGATWYGSPTGAGSD 217
Score = 23.5 bits (45), Expect(4) = 1e-037
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +2
Query: 364 KIRCRKDPSCSGRTETVIITD 426
K + +CSG TV+ITD
Sbjct: 335 KCTSSSNAACSGNPVTVVITD 397
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 118 bits (252), Expect(3) = 7e-035
Identities = 45/78 (57%), Positives = 60/78 (76%)
Frame = +1 / +3
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ IE RVPC +PG + FHV+ S+P YFA L
Sbjct: 87 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 266
Query: 631 VEYEDGDGDVVQVDLMES 684
VEYEDGDGD+ V+L ++
Sbjct: 267 VEYEDGDGDLKSVELKQA 320
Score = 45.1 bits (92), Expect(3) = 7e-035
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / +3
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 429 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 518
Score = 23.1 bits (44), Expect(3) = 7e-035
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +3
Query: 388 SCSGRTETVIITD 426
+CSG TV+ITD
Sbjct: 15 ACSGNPVTVVITD 53
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 100 bits (212), Expect(3) = 2e-034
Identities = 39/77 (50%), Positives = 55/77 (71%)
Frame = +1 / +1
Query: 454 HFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVLV 633
HFDLSG AFGR+A SG N +LR+ G + + + R PC++PG I FHV E S+ + ++LV
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 399
Query: 634 EYEDGDGDVVQVDLMES 684
E+EDGDGDV + + E+
Sbjct: 400 EFEDGDGDVGSMHIREA 450
Score = 57.9 bits (120), Expect(3) = 2e-034
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1 / +1
Query: 292 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 426
PF + + LFK+G+GCG+CYK+RC CS R T+I+TD
Sbjct: 49 PFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 183
Score = 32.2 bits (64), Expect(3) = 2e-034
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1 / +1
Query: 814 KTLVARNVIPANWRPNTFYRSFVQY 888
+TL AR VIP NW P Y S + +
Sbjct: 562 RTLSAREVIPRNWAPKATYTSRLNF 636
>gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043E09 5', mRNA sequence
Length = 621
Score = 97.3 bits (206), Expect(3) = 2e-033
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = +1 / +2
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVL 630
+HFDLSGTAFG +A SG D+LR++G++ IE RVPC +PG + FHV+ S+P YFA L
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFATL 610
Query: 631 VEY 639
VEY
Sbjct: 611 VEY 619
Score = 47.8 bits (98), Expect(3) = 2e-033
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1 / +2
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITDM 429
D G Q PF S+ S G ++K G+GCG+CY+++C + + V +
Sbjct: 215 DGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKCTSSSNAAWSGNPVTVVIT 394
Query: 430 NYYP 441
+ P
Sbjct: 395 DQCP 406
Score = 36.3 bits (73), Expect(3) = 2e-033
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1 / +2
Query: 196 WQKARATWYGQPNGAGPD 249
W A ATWYG P GAG D
Sbjct: 164 WSPAGATWYGSPTGAGSD 217
>gb|BU893439.1|BU893439 P077G06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 463
Score = 96.8 bits (205), Expect(3) = 1e-032
Identities = 37/69 (53%), Positives = 50/69 (72%)
Frame = +1 / +3
Query: 454 HFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVLV 633
HFDLSG A GR+A SG N +LR+ G + + + R PC++PG I FHV E S+ + ++LV
Sbjct: 246 HFDLSGAAIGRMAISGENGQLRNRGELPVSYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 425
Query: 634 EYEDGDGDV 660
E+EDGDGDV
Sbjct: 426 EFEDGDGDV 452
Score = 57.9 bits (120), Expect(3) = 1e-032
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +1 / +3
Query: 292 PFMSMGSCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 426
PF + + LFK+G+GCG+CYK+RC CS R T+I+TD
Sbjct: 75 PFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 209
Score = 24.4 bits (47), Expect(3) = 1e-032
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1 / +3
Query: 217 WYGQPNGAGPD 249
WYG P+G G D
Sbjct: 3 WYGSPDGDGSD 35
>gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060H08 5', mRNA sequence
Length = 581
Score = 88.1 bits (186), Expect(4) = 2e-032
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +1 / +1
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFA 624
+HFDLSGTAFG +A SG D+LR++G++ IE RVPC +PG + FHV+ S+P YFA
Sbjct: 403 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSNPYYFA 576
Score = 47.3 bits (97), Expect(4) = 2e-032
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1 / +1
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRC 375
D G Q PF S+ S G ++K G+GCG+CY+++C
Sbjct: 187 DGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 312
Score = 36.3 bits (73), Expect(4) = 2e-032
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1 / +1
Query: 196 WQKARATWYGQPNGAGPD 249
W A ATWYG P GAG D
Sbjct: 136 WSPAGATWYGSPTGAGSD 189
Score = 23.5 bits (45), Expect(4) = 2e-032
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +1
Query: 364 KIRCRKDPSCSGRTETVIITD 426
K + +CSG TV+ITD
Sbjct: 307 KCTSSSNAACSGNPVTVVITD 369
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 101 bits (216), Expect(3) = 2e-031
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +1 / -2
Query: 454 HFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVLV 633
HFDLSG AFGR+A SG N +LR+ G I + + R PC++PG I FHV E S+ + ++LV
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSILV 619
Query: 634 EYEDGDGDVVQVDLMES 684
E+EDGDGDV + + E+
Sbjct: 618 EFEDGDGDVGSMHIREA 568
Score = 42.8 bits (87), Expect(3) = 2e-031
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1 / -2
Query: 349 CGSCYKIRCRKDPSCSGRTETVIITD 426
CG+CYK+RC CS R T+I+TD
Sbjct: 912 CGACYKVRCLDKSICSRRAVTIIVTD 835
Score = 35.4 bits (71), Expect(3) = 2e-031
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1 / -2
Query: 808 SGKTLVARNVIPANWRPNTFYRSFVQY 888
+G+TL AR VIP NW P Y S + +
Sbjct: 462 TGRTLSAREVIPRNWAPKATYTSRLNF 382
>gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 624
Score = 99.6 bits (211), Expect(2) = 6e-030
Identities = 39/76 (51%), Positives = 54/76 (71%)
Frame = +1 / +1
Query: 454 HFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVLV 633
HFDLSG AFGR+A SG N +LR+ G + + + R PC++PG I FHV E S+ + ++LV
Sbjct: 169 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLV 348
Query: 634 EYEDGDGDVVQVDLME 681
E+EDGDGDV + + E
Sbjct: 349 EFEDGDGDVGSMHIRE 396
Score = 52.4 bits (108), Expect(2) = 6e-030
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1 / +1
Query: 310 SCGNQPLFKDGKGCGSCYKIRCRKDPSCSGRTETVIITD 426
+ G LFK+G+G G+CYK+RC CS R T+I+TD
Sbjct: 16 TAGEPVLFKNGEGRGACYKVRCLDKSICSRRAVTIIVTD 132
>gb|CX654070.1|CX654070 PO02012F04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012F04 5', mRNA sequence
Length = 591
Score = 77.6 bits (163), Expect(4) = 3e-029
Identities = 29/53 (54%), Positives = 40/53 (75%)
Frame = +1 / +2
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSS 609
+HFDLSGTAFG +A SG D+LR++G++ IE RVPC +PG + FHV+ S+
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDSGSN 589
Score = 47.3 bits (97), Expect(4) = 3e-029
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1 / +2
Query: 250 DNGGACGFKHTNQYPFMSMGSCGNQPLFKDGKGCGSCYKIRC 375
D G Q PF S+ S G ++K G+GCG+CY+++C
Sbjct: 215 DGGACGYGNAVEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 36.3 bits (73), Expect(4) = 3e-029
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1 / +2
Query: 196 WQKARATWYGQPNGAGPD 249
W A ATWYG P GAG D
Sbjct: 164 WSPAGATWYGSPTGAGSD 217
Score = 23.5 bits (45), Expect(4) = 3e-029
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +2
Query: 364 KIRCRKDPSCSGRTETVIITD 426
K + +CSG TV+ITD
Sbjct: 335 KCTSSSNAACSGNPVTVVITD 397
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 101 bits (215), Expect(2) = 9e-025
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1 / +1
Query: 454 HFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFAVLV 633
HFDLSG AFGR+A SG N +LR+ G I + + R PC +PG I FHV E S+ + ++LV
Sbjct: 67 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCNYPGKNIAFHVNEGSTDYWLSILV 246
Query: 634 EYEDGDGDVVQVDLMES 684
E+EDGDGDV + + E+
Sbjct: 247 EFEDGDGDVGSMHIREA 297
Score = 35.4 bits (71), Expect(2) = 9e-025
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1 / +1
Query: 808 SGKTLVARNVIPANWRPNTFYRSFVQY 888
+G+TL AR VIP NW P Y S + +
Sbjct: 403 TGRTLSAREVIPRNWTPKATYTSRLNF 483
>gb|CX655588.1|CX655588 PO02036H10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036H10 5', mRNA sequence
Length = 362
Score = 78.0 bits (164), Expect(3) = 1e-023
Identities = 30/58 (51%), Positives = 40/58 (68%)
Frame = +1 / +3
Query: 451 YHFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSSPVYFA 624
+H DLSGTAFG +A SG D+LR++ ++ IE RVPC +PG + FHV+ S P Y A
Sbjct: 186 FHLDLSGTAFGAMAISGKEDQLRNAAVLQIEHQRVPCNWPGKTVTFHVDSGSHPYYSA 359
Score = 46.9 bits (96), Expect(3) = 1e-023
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1 / +3
Query: 286 QYPFMSMGSCGNQPLFKDGKGCGSCYKIRC 375
Q PF S+ S G ++K G+GCG+CY+++C
Sbjct: 6 QAPFSSLISAGGDSIYKSGQGCGACYQVKC 95
Score = 23.5 bits (45), Expect(3) = 1e-023
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +3
Query: 364 KIRCRKDPSCSGRTETVIITD 426
K + +CSG TV+ITD
Sbjct: 90 KCTSSSNAACSGNPVTVVITD 152
>gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I10 3', mRNA sequence
Length = 458
Score = 51.0 bits (105), Expect(3) = 3e-021
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +1 / -1
Query: 580 IGFHVEEYSSPVYFAVLVEYEDGDGDVVQVDLMES 684
+ FHV+ S+P YFA +VEYEDGDG++ V+L ++
Sbjct: 458 VTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQA 354
Score = 45.1 bits (92), Expect(3) = 3e-021
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / -1
Query: 805 ESGKTLVARNVIPANWRPNTFYRSFVQYS* 894
ESGKT+VA VIPA W P YRS V ++*
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN* 156
Score = 44.1 bits (90), Expect(3) = 3e-021
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1 / -1
Query: 715 WAPMRESWGSVWRMDTNHRMQPPFSIRI 798
W PM++SWG+VW++D ++ P SI++
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKL 255
>gb|BU884348.1|BU884348 R009D12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 663
Score = 62.9 bits (131), Expect(3) = 1e-020
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +1 / +1
Query: 544 FTRVPCEFPGLKIGFHVEEYSSPVYFAVLVEYEDGDGDVVQVDLMES 684
F R PC++PG I FHV E S+ + ++LVE+EDGDGDV + + E+
Sbjct: 313 FCRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREA 453
Score = 44.6 bits (91), Expect(3) = 1e-020
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +1 / +2
Query: 454 HFDLSGTAFGRLAKSGLNDKLRHSGIIDIEFTR 552
HFDLSG AFGR+A SG N +LR+ G + + + R
Sbjct: 47 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRR 145
Score = 35.4 bits (71), Expect(3) = 1e-020
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1 / +1
Query: 808 SGKTLVARNVIPANWRPNTFYRSFVQY 888
+G+TL AR VIP NW P Y S + +
Sbjct: 559 TGRTLSAREVIPRNWAPKATYTSRLNF 639
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 446,578,931
Number of Sequences: 369679
Number of extensions: 5596009
Number of successful extensions: 38213
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 18175132677
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)