TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276425.2.1
(753 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA926079.1|CA926079 MTU7TL.P9.H01 Aspen leaf cDNA Librar... 317 6e-086
gb|CX656670.1|CX656670 PO02021H09 Poplar SC cDNA library Po... 308 2e-083
gb|AI161661.1|AI161661 A004P72U Hybrid aspen plasmid librar... 277 6e-074
gb|CN549763.1|CN549763 GQ0242.B3_I03 GQ024 Populus trichoca... 247 8e-065
gb|CK087291.1|CK087291 A002P26.3pR Hybrid aspen plasmid lib... 231 5e-060
gb|CK092568.1|CK092568 G087P77.3pR Populus tension wood cDN... 228 4e-059
gb|CK318227.1|CK318227 B9P06h06 Populus stem seasonal libra... 227 5e-059
gb|CV229369.1|CV229369 WS01913.B21_B10 PT-DX-N-A-10 Populus... 227 5e-059
gb|DN491794.1|DN491794 V020F03.3pR Populus male catkins cDN... 226 1e-058
gb|CK115173.1|CK115173 Y004D03 Populus infected leaf substr... 223 1e-057
gb|BI129236.1|BI129236 G087P77Y Populus cambium cDNA librar... 162 3e-039
gb|CA822305.1|CA822305 R06D03 two-month-old roots from clon... 96 6e-036
gb|BU897829.1|BU897829 X070C12 Populus wood cDNA library Po... 130 1e-029
>gb|CA926079.1|CA926079 MTU7TL.P9.H01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 317 bits (686), Expect = 6e-086
Identities = 121/134 (90%), Positives = 126/134 (94%)
Frame = +2 / -3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+LATQR+KWGDK YLEN YYLHGYWGILVDRYEEM+ENY PGLGDHRWPLVTHFVGCK
Sbjct: 499 VYLLATQRDKWGDKVYLENAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCK 320
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGKFGDY VERCLK MDRAFNFGDNQILQ+YGFTHKSLASRRVKR+RNET NPLE KDE
Sbjct: 319 PCGKFGDYSVERCLKQMDRAFNFGDNQILQIYGFTHKSLASRRVKRVRNETGNPLEAKDE 140
Query: 362 LGLLHPAFKAVKTS 403
LGLLHPAFKAVK S
Sbjct: 139 LGLLHPAFKAVKVS 98
Score = 146 bits (314), Expect = 1e-034
Identities = 56/132 (42%), Positives = 91/132 (68%)
Frame = -3 / +2
Query: 406 CGSLHSLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHI 227
C L S +C +KQ KLIL KW+A L+ L+SP + + I+LQ+L+IPKI+C +H+
Sbjct: 95 C*YLDSFKCRVKQAKLILRFKWIACLISHSLNSPTSQRFMSKSINLQNLIIPKIKCAIHL 274
Query: 226 LEASLDRVVSKFATRLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKV 47
L+ L ++S+ TRLAP KV ++ P +I + W++IL H L+P++Q+PP+ ++++ IL +
Sbjct: 275 LQTPLH*IISELPTRLAPHKVSNKRPTMITKAWVIILNHFLIPINQNPPITMQIISIL*I 454
Query: 46 SLITPFLALCRE 11
LITP + LC +
Sbjct: 455 HLITPLIPLCSQ 490
Score = 143 bits (307), Expect(2) = 2e-034
Identities = 68/91 (74%), Positives = 71/91 (78%)
Frame = -1 / +3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
VNP ICKI LSPKLNARSI +H ST *SPN P GLHPTK VTSG R*SP PG *FS IS
Sbjct: 216 VNP*ICKI*LSPKLNARSICFKHLSTE*SPNFPQGLHPTK*VTSGQR*SPRPG**FSIIS 395
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVA 13
SYLSTKIPQ*P +* FS+ LSPH S CVA
Sbjct: 396 SYLSTKIPQ*PCK**AFSKYTLSPHLSLCVA 488
Score = 22.6 bits (43), Expect(2) = 2e-034
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1 / +3
Query: 402 EVFTALNAG*SNP 364
+ TALNAG*S P
Sbjct: 99 DTLTALNAG*SKP 137
>gb|CX656670.1|CX656670 PO02021H09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02021H09 5', mRNA sequence
Length = 630
Score = 308 bits (668), Expect = 2e-083
Identities = 119/134 (88%), Positives = 125/134 (93%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+LATQR+KWGDK YL+N YYLHGYWGILVDRYEEM+ENY PGLGDHR PLVTHFVGCK
Sbjct: 126 VYLLATQRDKWGDKVYLKNAYYLHGYWGILVDRYEEMIENYHPGLGDHRRPLVTHFVGCK 305
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGKFGDY VERCLK MDRAFNFGDNQILQ+YGFTHKSLASRRVKR+RNET NPLE KDE
Sbjct: 306 PCGKFGDYSVERCLKQMDRAFNFGDNQILQIYGFTHKSLASRRVKRVRNETGNPLEAKDE 485
Query: 362 LGLLHPAFKAVKTS 403
LGLLHPAFKAVK S
Sbjct: 486 LGLLHPAFKAVKVS 527
Score = 142 bits (305), Expect = 2e-033
Identities = 55/132 (41%), Positives = 89/132 (67%)
Frame = -3 / -2
Query: 406 CGSLHSLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHI 227
C L S +C +KQ KLIL KW+A L+ L+SP + + I+LQ L+IPKI+C +H+
Sbjct: 530 C*YLDSFKCRVKQAKLILRFKWIACLISHSLNSPTSQRFMSKSINLQYLIIPKIKCAIHL 351
Query: 226 LEASLDRVVSKFATRLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKV 47
L+ L ++S+ TRLAP KV ++ P +I + W++IL H L+P++Q+PP+ ++++ IL +
Sbjct: 350 LQTPLH*IISELPTRLAPHKVSNKRPTMITKTWVIILNHFLIPINQNPPITMQIISIL*I 171
Query: 46 SLITPFLALCRE 11
LI P + LC +
Sbjct: 170 HLIAPLIPLCSQ 135
Score = 138 bits (296), Expect(2) = 6e-033
Identities = 66/91 (72%), Positives = 69/91 (75%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
VNP IC I LSPKLNARSI +H ST *SPN P GLHPTK VTSG R*SP PG *FS IS
Sbjct: 409 VNP*ICNI*LSPKLNARSICFKHLSTE*SPNFPQGLHPTK*VTSGRR*SPRPG**FSIIS 230
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVA 13
SYLSTKIPQ*P +* F + LSPH S CVA
Sbjct: 229 SYLSTKIPQ*PCK**AFFKYTLSPHLSLCVA 137
Score = 22.6 bits (43), Expect(2) = 6e-033
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1 / -3
Query: 402 EVFTALNAG*SNP 364
+ TALNAG*S P
Sbjct: 526 DTLTALNAG*SKP 488
>gb|AI161661.1|AI161661 A004P72U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 598
Score = 277 bits (599), Expect = 6e-074
Identities = 105/116 (90%), Positives = 111/116 (95%)
Frame = +2 / +1
Query: 50 LENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKN 229
LEN YYLHGYWGILVDRYEEM+ENY PGLGDHRWPLVTHFVGCKPCGKFGDY VERCLK
Sbjct: 25 LENAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYSVERCLKQ 204
Query: 230 MDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVK 397
MDRAFNFGDNQILQ+YGFTHKSLASRRV+R+RNET+NPLE KDELGLLHPAFKAV+
Sbjct: 205 MDRAFNFGDNQILQIYGFTHKSLASRRVRRVRNETNNPLEVKDELGLLHPAFKAVR 372
Score = 126 bits (269), Expect(2) = 2e-028
Identities = 60/86 (69%), Positives = 66/86 (76%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
VNP IC+I LSPKLNARSI +H ST *SPN P GLHPTK VTSG R*SP PG *FS IS
Sbjct: 260 VNP*ICRI*LSPKLNARSICFKHLSTE*SPNFPQGLHPTK*VTSGQR*SPRPG**FSIIS 81
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHF 28
SYLSTKIPQ*P +* FS+ +P +
Sbjct: 80 SYLSTKIPQ*PCK**AFSKSLYNPTY 3
Score = 122 bits (260), Expect = 4e-027
Identities = 47/117 (40%), Positives = 79/117 (67%)
Frame = -3 / -2
Query: 391 SLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHILEASL 212
S +C +KQ KLIL KW+ L+ +SP + +PI+L +L++PKI+ +H+L+ L
Sbjct: 366 SFKCRVKQAKLILHFKWIVSLISHSPNSPTSQRFMSKPINL*NLIVPKIKRPIHLLQTPL 187
Query: 211 DRVVSKFATRLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKVSL 41
++S+ TR AP KV D+ P +IA+ W++IL H LV ++QDPP+ ++++ IL ++L
Sbjct: 186 H*IISELPTRFAPHKVSDKRPTMIAQTWVIILNHFLVSINQDPPITMQIISIL*ITL 16
Score = 21.7 bits (41), Expect(2) = 2e-028
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 393 TALNAG*SNP 364
TALNAG*S P
Sbjct: 368 TALNAG*SKP 339
>gb|CN549763.1|CN549763 GQ0242.B3_I03 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_I03 5', mRNA sequence
Length = 504
Score = 247 bits (533), Expect = 8e-065
Identities = 95/106 (89%), Positives = 101/106 (95%)
Frame = +2 / +2
Query: 89 LVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQIL 268
LVDRYEEM+ENY PGLGDHRWPLVTHFVGCKPCGKFGDY VERCLK MDRAFNFGDNQIL
Sbjct: 2 LVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYSVERCLKQMDRAFNFGDNQIL 181
Query: 269 QMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVKTST 406
Q+YGFTHKSLASRRV+R+RNET+NPLE KDELGLLHPAFKAV+ ST
Sbjct: 182 QIYGFTHKSLASRRVRRVRNETTNPLEVKDELGLLHPAFKAVRVST 319
Score = 110 bits (234), Expect(2) = 4e-025
Identities = 51/66 (77%), Positives = 53/66 (80%)
Frame = -1 / -1
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
VNP IC+I LSPKLNARSI +H ST *SPN P GLHPTK VTSG R*SP PG *FS IS
Sbjct: 198 VNP*ICRI*LSPKLNARSICFKHLSTE*SPNFPQGLHPTK*VTSGQR*SPRPG**FSIIS 19
Query: 105 SYLSTK 88
SYLSTK
Sbjct: 18 SYLSTK 1
Score = 104 bits (222), Expect = 6e-022
Identities = 41/101 (40%), Positives = 66/101 (65%)
Frame = -3 / -3
Query: 391 SLECWMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHILEASL 212
S +C +KQ KLIL KW+ L+ +SP + +PI+LQ+L+IPKI+ +H+L+ L
Sbjct: 304 SFKCRVKQAKLILHFKWIGSLISHSPNSPTSQRFMSKPINLQNLIIPKIKRPIHLLQTPL 125
Query: 211 DRVVSKFATRLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQ 89
++S+ TR AP KV D+ P +I + W++IL H L+ ++Q
Sbjct: 124 H*IISELPTRFAPHKVSDKRPTMITQTWVIILNHFLISINQ 2
Score = 24.4 bits (47), Expect(2) = 4e-025
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1 / -1
Query: 405 VEVFTALNAG*SNP 364
V+ TALNAG*S P
Sbjct: 318 VDTLTALNAG*SKP 277
>gb|CK087291.1|CK087291 A002P26.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P26 3', mRNA sequence
Length = 805
Score = 231 bits (498), Expect = 5e-060
Identities = 81/126 (64%), Positives = 102/126 (80%)
Frame = +2 / -1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q+++W DK Y+EN YYLHGYW LVDRYEEM+E Y PGLGD RWP VTHFVGCK
Sbjct: 739 IYLLLSQKDQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCK 560
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPVERC+++M+RAFNF DNQ+L++YGF H+ L S ++KRIRNET PLE D+
Sbjct: 559 PCGSYGDYPVERCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQ 380
Query: 362 LGLLHP 379
+ P
Sbjct: 379 FDIRRP 362
Score = 111 bits (236), Expect = 7e-024
Identities = 55/88 (62%), Positives = 60/88 (68%)
Frame = -1 / +3
Query: 282 NPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSISS 103
NPY + WLS KL A S+ L HRSTG*SP LP GL PTK VT+GH SP+PG FS ISS
Sbjct: 459 NPYSLRTWLSAKLKALSMLLMHRSTG*SP*LPQGLQPTKWVTNGHLSSPNPG*YFSIISS 638
Query: 102 YLSTKIPQ*PWR*YPFSR*ALSPHFSRC 19
Y STK Q P +*Y FS * LS H S C
Sbjct: 639 YRSTKPAQYPCK*Y*FSI*TLSIH*SFC 722
>gb|CK092568.1|CK092568 G087P77.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P77 3', mRNA sequence
Length = 747
Score = 228 bits (492), Expect = 4e-059
Identities = 81/124 (65%), Positives = 101/124 (81%)
Frame = +2 / -2
Query: 8 ILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPC 187
++A+Q+++W DK Y+EN YYLHGYW LVDRYEEM+E Y PGLGD RWP VTHFVGCKPC
Sbjct: 722 LVASQKDQWMDKVYIENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPC 543
Query: 188 GKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELG 367
G +GDYPVERCL++M+RAFNF DNQ+L++YGF H+ L S ++KRIRNET PLE D+
Sbjct: 542 GSYGDYPVERCLRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFD 363
Query: 368 LLHP 379
+ P
Sbjct: 362 IRRP 351
Score = 119 bits (255), Expect(2) = 6e-028
Identities = 58/90 (64%), Positives = 64/90 (71%)
Frame = -1 / +1
Query: 282 NPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSISS 103
NPY + WLS KL A S+ L+HRSTG*SP LP GLHPTK VT+GH SP+PG FS ISS
Sbjct: 448 NPYSLRTWLSAKLKALSMLLKHRSTG*SP*LPQGLHPTKWVTNGHLSSPNPG*YFSIISS 627
Query: 102 YLSTKIPQ*PWR*YPFSR*ALSPHFSRCVA 13
YLSTK Q P +*Y FS * LS H S C A
Sbjct: 628 YLSTKPAQYPCK*Y*FSI*TLSIH*SFCEA 717
Score = 100 bits (214), Expect = 8e-021
Identities = 36/86 (41%), Positives = 61/86 (70%)
Frame = -3 / +3
Query: 277 IHLQDLVIPKIECTVHILEASLDRVVSKFATRLAPDKVCDEWPPVIAEPWLVILKHLLVP 98
I L+DLVI KIE ++H +A L+R++ TR AP+K+ ++WPP+I + W+++ HLL+P
Sbjct: 453 IQLKDLVISKIESSLHASQAPLNRIIPIAPTRFAPNKMGNKWPPLITQSWMILFNHLLIP 632
Query: 97 VDQDPPVAVEVVPILKVSLITPFLAL 20
+ Q P+ V+++ IL ++LI P + L
Sbjct: 633 IHQTRPIPVQIILILNINLIHPLILL 710
Score = 24.4 bits (47), Expect(2) = 6e-028
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 379 WMKQPKLILCLKWVAGLVPDPL 314
W KL+ L+W L+P+ L
Sbjct: 351 WTPNVKLVYVLQWSHSLIPNSL 416
>gb|CK318227.1|CK318227 B9P06h06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 760
Score = 227 bits (491), Expect = 5e-059
Identities = 80/126 (63%), Positives = 101/126 (80%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q+ +W DK Y+EN YYLHGYW LVDRYEEM+E Y PGLGD RWP VTHFVGCK
Sbjct: 339 IYLLLSQKAQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCK 518
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPVE+C+++M+RAFNF DNQ+L++YGF H+ L S ++KRIRNET PLE D+
Sbjct: 519 PCGSYGDYPVEQCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQ 698
Query: 362 LGLLHP 379
+ P
Sbjct: 699 FDIRRP 716
Score = 105 bits (223), Expect = 4e-022
Identities = 53/88 (60%), Positives = 59/88 (67%)
Frame = -1 / -1
Query: 282 NPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSISS 103
NPY + WLS KL A S+ L H STG*SP LP GL PTK VT+GH SPSPG FS ISS
Sbjct: 619 NPYSLRTWLSAKLKALSMLLMHCSTG*SP*LPQGLQPTK*VTNGHLSSPSPG*YFSIISS 440
Query: 102 YLSTKIPQ*PWR*YPFSR*ALSPHFSRC 19
Y ST+ Q P +*Y FS * LS H + C
Sbjct: 439 YRSTRPAQYPCK*Y*FSI*TLSIH*AFC 356
>gb|CV229369.1|CV229369 WS01913.B21_B10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_B10 3', mRNA sequence
Length = 817
Score = 227 bits (491), Expect = 5e-059
Identities = 80/126 (63%), Positives = 101/126 (80%)
Frame = +2 / -1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q+ +W DK Y+EN YYLHGYW LVDRYEEM+E Y PGLGD RWP VTHFVGCK
Sbjct: 664 IYLLLSQKAQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCK 485
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPVE+C+++M+RAFNF DNQ+L++YGF H+ L S ++KRIRNET PLE D+
Sbjct: 484 PCGSYGDYPVEQCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQ 305
Query: 362 LGLLHP 379
+ P
Sbjct: 304 FDIRRP 287
Score = 105 bits (223), Expect = 4e-022
Identities = 53/88 (60%), Positives = 59/88 (67%)
Frame = -1 / +3
Query: 282 NPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSISS 103
NPY + WLS KL A S+ L H STG*SP LP GL PTK VT+GH SPSPG FS ISS
Sbjct: 384 NPYSLRTWLSAKLKALSMLLMHCSTG*SP*LPQGLQPTK*VTNGHLSSPSPG*YFSIISS 563
Query: 102 YLSTKIPQ*PWR*YPFSR*ALSPHFSRC 19
Y ST+ Q P +*Y FS * LS H + C
Sbjct: 564 YRSTRPAQYPCK*Y*FSI*TLSIH*AFC 647
>gb|DN491794.1|DN491794 V020F03.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V020F03 3', mRNA sequence
Length = 685
Score = 226 bits (488), Expect = 1e-058
Identities = 79/126 (62%), Positives = 101/126 (80%)
Frame = +2 / -1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q+ +W DK Y+EN YYLHGYW LVDRYE+M+E Y PGLGD RWP VTHFVGCK
Sbjct: 469 IYLLLSQKAQWMDKVYIENQYYLHGYWAGLVDRYEQMMEKYHPGLGDERWPFVTHFVGCK 290
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPVE+C+++M+RAFNF DNQ+L++YGF H+ L S ++KRIRNET PLE D+
Sbjct: 289 PCGSYGDYPVEQCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQ 110
Query: 362 LGLLHP 379
+ P
Sbjct: 109 FDIRRP 92
Score = 102 bits (217), Expect = 3e-021
Identities = 51/88 (57%), Positives = 58/88 (65%)
Frame = -1 / +3
Query: 282 NPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSISS 103
NPY + WLS KL A S+ L H STG*SP LP GL PTK VT+GH SP+PG FS I S
Sbjct: 189 NPYSLRTWLSAKLKALSMLLMHCSTG*SP*LPQGLQPTKWVTNGHLSSPNPG*YFSIICS 368
Query: 102 YLSTKIPQ*PWR*YPFSR*ALSPHFSRC 19
Y ST+ Q P +*Y FS * LS H + C
Sbjct: 369 YRSTRPAQYPCK*Y*FSI*TLSIH*AFC 452
>gb|CK115173.1|CK115173 Y004D03 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y004D03 5', mRNA sequence
Length = 518
Score = 223 bits (481), Expect = 1e-057
Identities = 80/120 (66%), Positives = 96/120 (80%)
Frame = +2 / +3
Query: 20 QREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFG 199
Q++ W DK Y+EN YYLHGYW LVDRYEEM+E Y PGLGD RWP VTHFVGCKPCG +G
Sbjct: 18 QKDLWMDKVYIENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYG 197
Query: 200 DYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHP 379
DYPVERCL++M+RAFNF DNQ+L++YGF H+ L S ++KRIRNET PLE D+ + P
Sbjct: 198 DYPVERCLRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIRRP 377
Score = 116 bits (248), Expect = 2e-025
Identities = 56/88 (63%), Positives = 62/88 (70%)
Frame = -1 / -2
Query: 282 NPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSISS 103
NPY + WLS KL A S+ L+HRSTG*SP LP GLHPTK VT+GH SP+PG FS ISS
Sbjct: 280 NPYSLRTWLSAKLKALSMLLKHRSTG*SP*LPQGLHPTKWVTNGHLSSPNPG*YFSIISS 101
Query: 102 YLSTKIPQ*PWR*YPFSR*ALSPHFSRC 19
Y STK Q P +*Y FS * LS H S C
Sbjct: 100 YRSTKPAQYPCK*Y*FSI*TLSIHRSFC 17
Score = 104 bits (221), Expect = 8e-022
Identities = 43/120 (35%), Positives = 74/120 (61%)
Frame = -3 / -1
Query: 379 WMKQPKLILCLKWVAGLVPDPLHSPAC**LVCEPIHLQDLVIPKIECTVHILEASLDRVV 200
W KL+ L+ L+P+ L A + + I L+DLVI KIE ++H +A L+R++
Sbjct: 377 WTPNVKLVYVLQRSHSLIPNSLDLRAQQSPMTKSIQLKDLVISKIESSLHASQAPLNRII 198
Query: 199 SKFATRLAPDKVCDEWPPVIAEPWLVILKHLLVPVDQDPPVAVEVVPILKVSLITPFLAL 20
T AP+K+ ++WPP+I + W+++ HLL+P+ Q P+ V+++ IL ++LI P + L
Sbjct: 197 PIAPTGFAPNKMGNKWPPLITQSWMILFNHLLIPIHQTCPIPVQIILILNINLIHPQILL 18
>gb|BI129236.1|BI129236 G087P77Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 393
Score = 162 bits (348), Expect = 3e-039
Identities = 55/77 (71%), Positives = 66/77 (85%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q+++W DK Y+EN YYLHGYW LVDRYEEM+E Y PGLGD RWP VTHFVGCK
Sbjct: 162 IYLLLSQKDQWMDKVYIENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCK 341
Query: 182 PCGKFGDYPVERCLKNM 232
PCG +GDYPVERCL++M
Sbjct: 342 PCGSYGDYPVERCLRSM 392
>gb|CA822305.1|CA822305 R06D03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 302
Score = 96.4 bits (204), Expect(2) = 6e-036
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +2 / +1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLEN 121
VY+LATQR++WGDK YLEN YYLHGYWGILVDRYEEM+EN
Sbjct: 103 VYLLATQRDRWGDKVYLENAYYLHGYWGILVDRYEEMIEN 222
Score = 74.4 bits (156), Expect(2) = 6e-036
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +2 / +3
Query: 128 PGLGDHRWPLVTHFVGCKPCGKFGD 202
PGLGDHRWPLVTHFVGCKPCGKFGD
Sbjct: 228 PGLGDHRWPLVTHFVGCKPCGKFGD 302
>gb|BU897829.1|BU897829 X070C12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 421
Score = 130 bits (278), Expect = 1e-029
Identities = 48/60 (80%), Positives = 52/60 (86%)
Frame = +2 / +2
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+LATQR+ WGDK YLEN YYLHGYWGILVD Y+EM+ENY P LGDHR LVTHFVGCK
Sbjct: 242 VYLLATQRDNWGDKVYLENAYYLHGYWGILVDTYQEMIENYHPCLGDHR*SLVTHFVGCK 421
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 397,033,718
Number of Sequences: 369679
Number of extensions: 5774954
Number of successful extensions: 42471
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9618756840
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)