TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT504153.1|DT504153 WS01312.B21_D13 PTxD-IL-FL-A-4 Popul... 303 8e-082
gb|DT504872.1|DT504872 WS01315.B21_B17 PTxD-IL-FL-A-4 Popul... 303 8e-082
gb|CK087289.1|CK087289 A002P24.3pR Hybrid aspen plasmid lib... 299 1e-080
gb|BI127944.1|BI127944 G068P57Y Populus cambium cDNA librar... 293 9e-079
gb|DN490311.1|DN490311 UK114TF04.3pR Populus apical shoot c... 232 5e-067
gb|CV279316.1|CV279316 WS0131.B21_D03 PTxD-IL-FL-A-4 Populu... 225 3e-058
gb|BI127933.1|BI127933 G068P40Y Populus cambium cDNA librar... 206 1e-052
gb|CV280120.1|CV280120 WS0134.B21_O04 PTxD-IL-FL-A-4 Populu... 204 7e-052
>gb|DT504153.1|DT504153 WS01312.B21_D13 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_D13 3', mRNA sequence
Length = 898
Score = 303 bits (656), Expect = 8e-082
Identities = 126/145 (86%), Positives = 137/145 (94%)
Frame = +1 / -2
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLP+FESRK LI INL+TV+++ DVNIDE
Sbjct: 681 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVSTDVNIDE 502
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDEIKNM KDEI+ DPVAMCDF EAL
Sbjct: 501 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALR 322
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ+SVSPSDIEKHEKW +EFGSA*
Sbjct: 321 KVQRSVSPSDIEKHEKWFSEFGSA* 247
Score = 182 bits (393), Expect = 2e-045
Identities = 90/145 (62%), Positives = 101/145 (69%)
Frame = -2 / +2
Query: 437 QADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRL 258
QADPNS HFSCFS+S+GETL *TF +AS+KSH+ATGS ISS MFLISSRVLPAI RL
Sbjct: 248 QADPNSENHFSCFSISDGETLR*TFRKASSKSHIATGSFEISSLGMFLISSRVLPAIFRL 427
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXX 78
+PF EAS QT VRSSPL PSVLRATSS+LTS TV +L+LIS+ L
Sbjct: 428 IPFKEASLQTLVRSSPLYPSVLRATSSILTSVDTSTVFKLILISSLRLSKFGSGIYIRFS 607
Query: 77 XXXXXXXXXSHGKFVAARTITIFWL 3
S GK VAA+TITIF L
Sbjct: 608 NLLLSASSMSQGKLVAAKTITIFRL 682
Score = 167 bits (359), Expect = 8e-041
Identities = 72/143 (50%), Positives = 100/143 (69%)
Frame = -1 / +1
Query: 438 SGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAP 259
SG K PLLMLL +* +T LNL Q K+ H +R++ L+L HVL+ ++ LA YL+P
Sbjct: 247 SG*SKFREPLLMLLDI*WGNTALNLPQGFFKITHCNRIV*NLILRHVLNFISCLARYLSP 426
Query: 258 HAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLL 79
H I I+AN+ IIST++ CP SNL++++I G+L+ +I+ +K L+T KIWKWNI TL
Sbjct: 427 HPI*RSISANIS*IISTVSICPASNLINIDISGHLDSFQIDPNKLLTTLKIWKWNIYTLF 606
Query: 78 QPSPQCLINIPWKICSSQNHNNF 10
QP PQC I +P K+ SSQNH+ F
Sbjct: 607 QPPPQCFIYVPRKVSSSQNHHYF 675
Score = 96.8 bits (205), Expect(2) = 6e-022
Identities = 50/87 (57%), Positives = 56/87 (64%)
Frame = +2 / -3
Query: 20 WFWLLQIFHGILMRH*GEGWRSVFIFHFQILKVERHLSTLILEQFR*PQMLTSTRLLGGQ 199
WFWLL F G M+H*G GW+SV+IFHFQIL+V R L I + R P M RLL GQ
Sbjct: 665 WFWLLLTFLGT*MKH*GGGWKSVYIFHFQILRVVRSLLGSI*KLSRCPLMSILMRLLAGQ 486
Query: 200 KAIVEMI*QTFAAMPQ*MA*GAR*QAR 280
VEMI* FA M *M *G R*+AR
Sbjct: 485 MDTVEMI*LMFAEMLL*MG*GER*RAR 405
Score = 27.2 bits (53), Expect(2) = 6e-022
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / -1
Query: 378 CLAFRHREA*EVDG*VWVCLR 440
C R+REA*EV +W+ LR
Sbjct: 307 CFPIRYREA*EVVLGIWISLR 245
>gb|DT504872.1|DT504872 WS01315.B21_B17 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01315_B17 3', mRNA sequence
Length = 936
Score = 303 bits (656), Expect = 8e-082
Identities = 126/145 (86%), Positives = 137/145 (94%)
Frame = +1 / -1
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLP+FESRK LI INL+TV+++ DVNIDE
Sbjct: 681 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVSTDVNIDE 502
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDEIKNM KDEI+ DPVAMCDF EAL
Sbjct: 501 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALR 322
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ+SVSPSDIEKHEKW +EFGSA*
Sbjct: 321 KVQRSVSPSDIEKHEKWFSEFGSA* 247
Score = 182 bits (393), Expect = 2e-045
Identities = 90/145 (62%), Positives = 101/145 (69%)
Frame = -2 / +2
Query: 437 QADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRL 258
QADPNS HFSCFS+S+GETL *TF +AS+KSH+ATGS ISS MFLISSRVLPAI RL
Sbjct: 248 QADPNSENHFSCFSISDGETLR*TFRKASSKSHIATGSFEISSLGMFLISSRVLPAIFRL 427
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXX 78
+PF EAS QT VRSSPL PSVLRATSS+LTS TV +L+LIS+ L
Sbjct: 428 IPFKEASLQTLVRSSPLYPSVLRATSSILTSVDTSTVFKLILISSLRLSKFGSGIYIRFS 607
Query: 77 XXXXXXXXXSHGKFVAARTITIFWL 3
S GK VAA+TITIF L
Sbjct: 608 NLLLSASSMSQGKLVAAKTITIFRL 682
Score = 167 bits (359), Expect = 8e-041
Identities = 72/143 (50%), Positives = 100/143 (69%)
Frame = -1 / +1
Query: 438 SGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAP 259
SG K PLLMLL +* +T LNL Q K+ H +R++ L+L HVL+ ++ LA YL+P
Sbjct: 247 SG*SKFREPLLMLLDI*WGNTALNLPQGFFKITHCNRIV*NLILRHVLNFISCLARYLSP 426
Query: 258 HAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLL 79
H I I+AN+ IIST++ CP SNL++++I G+L+ +I+ +K L+T KIWKWNI TL
Sbjct: 427 HPI*RSISANIS*IISTVSICPASNLINIDISGHLDSFQIDPNKLLTTLKIWKWNIYTLF 606
Query: 78 QPSPQCLINIPWKICSSQNHNNF 10
QP PQC I +P K+ SSQNH+ F
Sbjct: 607 QPPPQCFIYVPRKVSSSQNHHYF 675
Score = 96.8 bits (205), Expect(3) = 5e-022
Identities = 50/87 (57%), Positives = 56/87 (64%)
Frame = +2 / -2
Query: 20 WFWLLQIFHGILMRH*GEGWRSVFIFHFQILKVERHLSTLILEQFR*PQMLTSTRLLGGQ 199
WFWLL F G M+H*G GW+SV+IFHFQIL+V R L I + R P M RLL GQ
Sbjct: 665 WFWLLLTFLGT*MKH*GGGWKSVYIFHFQILRVVRSLLGSI*KLSRCPLMSILMRLLAGQ 486
Query: 200 KAIVEMI*QTFAAMPQ*MA*GAR*QAR 280
VEMI* FA M *M *G R*+AR
Sbjct: 485 MDTVEMI*LMFAEMLL*MG*GER*RAR 405
Score = 27.2 bits (53), Expect(3) = 5e-022
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / -3
Query: 378 CLAFRHREA*EVDG*VWVCLR 440
C R+REA*EV +W+ LR
Sbjct: 307 CFPIRYREA*EVVLGIWISLR 245
Score = 21.7 bits (41), Expect(3) = 5e-022
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3 / -3
Query: 684 MLRVWLKEYLRNQKKKKK 737
+L WL +Y + KKKK
Sbjct: 58 LLPAWLDKYSADLTKKKK 5
>gb|CK087289.1|CK087289 A002P24.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P24 3', mRNA sequence
Length = 741
Score = 299 bits (647), Expect = 1e-080
Identities = 125/145 (86%), Positives = 136/145 (93%)
Frame = +1 / -1
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLP+FESRK LI INL+TV+++ DVNIDE
Sbjct: 642 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKDLIRINLKTVEVSTDVNIDE 463
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDEIKNM KDEI+ DPVAMCDF EAL
Sbjct: 462 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALR 283
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ+SVS SDIEKHEKW +EFGSA*
Sbjct: 282 KVQRSVSQSDIEKHEKWFSEFGSA* 208
Score = 177 bits (380), Expect = 1e-043
Identities = 88/145 (60%), Positives = 99/145 (68%)
Frame = -2 / +2
Query: 437 QADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRL 258
QADPNS HFSCFS+S+ ETL *TF +AS+KSH+ATGS ISS MFLISSRVLPAI RL
Sbjct: 209 QADPNSENHFSCFSISDWETLR*TFRKASSKSHIATGSFEISSLGMFLISSRVLPAIFRL 388
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLLXXXXXXXXXXXX 78
+PF EAS QT VRSSPL PSVLRATSS+LTS TV +L+LI + L
Sbjct: 389 IPFKEASLQTLVRSSPLYPSVLRATSSILTSVDTSTVFKLILIRSLRLSKFGSGIYIRFS 568
Query: 77 XXXXXXXXXSHGKFVAARTITIFWL 3
S GK VAA+TITIF L
Sbjct: 569 NLLLSASSMSQGKLVAAKTITIFRL 643
Score = 172 bits (370), Expect = 2e-042
Identities = 75/145 (51%), Positives = 102/145 (70%)
Frame = -1 / +1
Query: 438 SGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAP 259
SG K PLLMLL +* +T LNL Q K+ H +R++ L+L HVL+ ++ LA YL+P
Sbjct: 208 SG*SKFREPLLMLLDI*LGNTALNLPQGFFKITHCNRIV*NLILRHVLNFISCLARYLSP 387
Query: 258 HAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLL 79
H I I+AN+ IIST++ CP SNL++++I G+L+ +IN +K L+T KIWKWNI TLL
Sbjct: 388 HPI*RSISANIS*IISTVSICPASNLINIDISGHLDSFQINPNKVLTTLKIWKWNIYTLL 567
Query: 78 QPSPQCLINIPWKICSSQNHNNFLA 4
QP PQC I +P K+ SSQNH+ F A
Sbjct: 568 QPPPQCFIYVPRKVSSSQNHHYFPA 642
Score = 100 bits (213), Expect(2) = 5e-023
Identities = 52/87 (59%), Positives = 57/87 (65%)
Frame = +2 / -2
Query: 20 WFWLLQIFHGILMRH*GEGWRSVFIFHFQILKVERHLSTLILEQFR*PQMLTSTRLLGGQ 199
WFWLL F G M+H*G GWRSV+IFHFQIL+V R L LI + R P M RLL GQ
Sbjct: 626 WFWLLLTFLGT*MKH*GGGWRSVYIFHFQILRVVRTLLGLI*KLSRCPLMSILMRLLAGQ 447
Query: 200 KAIVEMI*QTFAAMPQ*MA*GAR*QAR 280
VEMI* FA M *M *G R*+AR
Sbjct: 446 MDTVEMI*LMFAEMLL*MG*GER*RAR 366
Score = 100 bits (212), Expect(2) = 6e-022
Identities = 51/105 (48%), Positives = 65/105 (61%)
Frame = +3 / -3
Query: 3 QPKNCYGSGCYKFSMGY**GTEAKAGEAYLYSTSRF*K*KGTYQH*S*NSSDSRRC*HRR 182
QP+N G GCY S+G+ * TE + GEAY+YSTS+F*+ G Y * N C +
Sbjct: 643 QPENSDGFGCY*LSLGHR*STEEEVGEAYIYSTSKF*ES*GPY*D*FENCRGVH*CQY** 464
Query: 183 GCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRD 317
GCS+DR + WR*S+ L RC +W EA+DS QD R + EH G D
Sbjct: 463 GCSQDRWIQWR*SN*CLQRCFFKWDEAKDSGQDTR*N*EHA*G*D 329
Score = 27.2 bits (53), Expect(2) = 5e-023
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / -3
Query: 378 CLAFRHREA*EVDG*VWVCLR 440
C R+REA*EV +W+ LR
Sbjct: 268 CFPIRYREA*EVVLGIWISLR 206
Score = 24.0 bits (46), Expect(2) = 6e-022
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2 / -2
Query: 338 CATLWRLW*RFRRVSRLQT*RSMRSGWLSLGLPE 439
C L + RF V Q RSMRSG +L PE
Sbjct: 308 CVILKKPCGRFSAVFPNQISRSMRSGSRNLDQPE 207
>gb|BI127944.1|BI127944 G068P57Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 488
Score = 293 bits (634), Expect = 9e-079
Identities = 124/145 (85%), Positives = 135/145 (93%)
Frame = +1 / +2
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFP DIDEALRRRLEKRIYIPLP+FESRK LI INL+TV+++ DVNIDE
Sbjct: 14 SRKIVMVLAATNFPGDIDEALRRRLEKRIYIPLPNFESRKDLIRINLKTVEVSTDVNIDE 193
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALV 363
VARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDEIKNM KDEI+ DPVAMCDF EAL
Sbjct: 194 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALR 373
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
KVQ+SVS SDIEKHEKW +EFGSA*
Sbjct: 374 KVQRSVSQSDIEKHEKWFSEFGSA* 448
Score = 171 bits (367), Expect = 6e-042
Identities = 74/141 (52%), Positives = 100/141 (70%)
Frame = -1 / -2
Query: 426 KLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHAIH 247
K PLLMLL +* +T LNL Q K+ H +R++ L+L HVL+ ++ LA YL+PH I
Sbjct: 436 KF*EPLLMLLDI*LGNTALNLPQGFFKITHCNRIV*NLILRHVLNFISCLARYLSPHPI* 257
Query: 246 *GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQPSP 67
I+AN+ IIST++ CP SNL+D++I G+L+ +IN +K L+T KIWKWNI TLLQP P
Sbjct: 256 RSISANIS*IISTVSICPASNLIDIDISGHLDSFQINPNKVLTTLKIWKWNIYTLLQPPP 77
Query: 66 QCLINIPWKICSSQNHNNFLA 4
QC I +P K+ SSQNH+ F A
Sbjct: 76 QCFIYVPRKVSSSQNHHYFPA 14
Score = 160 bits (344), Expect(2) = 2e-040
Identities = 76/108 (70%), Positives = 86/108 (79%)
Frame = -2 / -3
Query: 437 QADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRL 258
QADPNS HFSCFS+S+ ETL *TF +AS+KSH+ATGS ISS MFLISSRVLPAI RL
Sbjct: 447 QADPNSENHFSCFSISDWETLR*TFRKASSKSHIATGSFEISSLGMFLISSRVLPAIFRL 268
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLL 114
+PF EAS QT VRSSPL PSVLRATSS+LTS TV +L+LI + L
Sbjct: 267 IPFKEASLQTLVRSSPLYPSVLRATSSILTSVDTSTVFKLILIRSLRL 124
Score = 103 bits (219), Expect(2) = 7e-024
Identities = 53/87 (60%), Positives = 58/87 (66%)
Frame = +2 / +3
Query: 20 WFWLLQIFHGILMRH*GEGWRSVFIFHFQILKVERHLSTLILEQFR*PQMLTSTRLLGGQ 199
WFWLL F G M+H*G GWRSV+IFHFQIL+V R L LI + R P M S RLL GQ
Sbjct: 30 WFWLLLTFLGT*MKH*GGGWRSVYIFHFQILRVVRTLLGLI*KLSRCPLMSISMRLLAGQ 209
Query: 200 KAIVEMI*QTFAAMPQ*MA*GAR*QAR 280
VEMI* FA M *M *G R*+AR
Sbjct: 210 MDTVEMI*LMFAEMLL*MG*GER*RAR 290
Score = 102 bits (218), Expect = 2e-021
Identities = 52/105 (49%), Positives = 65/105 (61%)
Frame = +3 / +1
Query: 3 QPKNCYGSGCYKFSMGY**GTEAKAGEAYLYSTSRF*K*KGTYQH*S*NSSDSRRC*HRR 182
QP+N G GCY S G+ * TE + GEAY+YSTS+F*+ G Y * N C +R
Sbjct: 13 QPENSDGFGCY*LSWGHR*STEEEVGEAYIYSTSKF*ES*GPY*D*FENCRGVH*CQYR* 192
Query: 183 GCSEDRRL*WR*SDKRLPRCLNEWHEAQDSRQDPRRDQEHVKGRD 317
GCS+DR + WR*S+ L RC +W EA+DS QD R + EH G D
Sbjct: 193 GCSQDRWIQWR*SN*CLQRCFFKWDEAKDSGQDTR*N*EHA*G*D 327
Score = 27.2 bits (53), Expect(2) = 7e-024
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 378 CLAFRHREA*EVDG*VWVCLR 440
C R+REA*EV +W+ LR
Sbjct: 388 CFPIRYREA*EVVLRIWISLR 450
Score = 25.8 bits (50), Expect(2) = 2e-040
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 44 GKFVAARTITIFWL 3
GK VAA+TITIF L
Sbjct: 54 GKLVAAKTITIFRL 13
>gb|DN490311.1|DN490311 UK114TF04.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK114TF04 3', mRNA
sequence
Length = 647
Score = 232 bits (500), Expect(2) = 5e-067
Identities = 97/118 (82%), Positives = 105/118 (88%)
Frame = +1 / -1
Query: 37 NFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDEVARRTEGYSGD 216
NFPWDIDEALRRRLEKRIYIPLP F SRK LI INL+TV++A DVN+DEVARRTEGYSGD
Sbjct: 566 NFPWDIDEALRRRLEKRIYIPLPKF*SRKELIRINLKTVEVATDVNVDEVARRTEGYSGD 387
Query: 217 DLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPS 390
DLTNVCRD S+NGMR KIAGKTRDEIK+M KDEI+KDPVAMCDF EAL KVQ+ PS
Sbjct: 386 DLTNVCRDDSLNGMRCKIAGKTRDEIKSMPKDEISKDPVAMCDFEEALRKVQQQCFPS 213
Score = 124 bits (266), Expect(2) = 9e-035
Identities = 54/113 (47%), Positives = 77/113 (68%)
Frame = -1 / +3
Query: 375 LLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAPHAIH*GIAANVCQIISTIAFC 196
LLNL Q L K+ H +R+L L+L H L+ ++ L+CYLA HAI I+AN+ IIST++ C
Sbjct: 228 LLNLPQGLFKITHRNRIL*NLILRHGLNFISSLSCYLASHAI*RIISANIR*IISTVSLC 407
Query: 195 PPSNLVDVNICGYLNCSKINVDKCLSTFKIWKWNINTLLQPSPQCLINIPWKI 37
P SN +++ I +LN +I+ +K L+T K WK N+NTL QP P C I +P K+
Sbjct: 408 PASNFINIYIGCHLNGFQIDPNKLLTTLKFWKRNVNTLFQPPP*CFIYVPRKV 566
Score = 119 bits (254), Expect = 2e-026
Identities = 59/91 (64%), Positives = 68/91 (74%)
Frame = -2 / +1
Query: 386 GETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRLMPFIEASRQTFVRSSPL 207
G+ *TF +AS+KSH+ATGS ISS M LISSRV PAIL LMPF E+S QTFV+SSPL
Sbjct: 217 GKHCC*TFRKASSKSHIATGSFEISSLGMDLISSRVFPAILHLMPFKESSLQTFVKSSPL 396
Query: 206 *PSVLRATSSMLTSAAI*TVLRLMLISAFLL 114
PSV RATSS TS A TV +L+LIS+ L
Sbjct: 397 YPSVRRATSSTFTSVATSTVFKLILISSLRL 489
Score = 43.2 bits (88), Expect(2) = 5e-067
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / -2
Query: 364 KVQKSVSPSDIEKHEKWMAEFGSA* 438
+ SVS +DIEKHEKW EFGSA*
Sbjct: 238 RFSSSVSQADIEKHEKWFTEFGSA* 164
Score = 42.3 bits (86), Expect(2) = 9e-035
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / +3
Query: 467 EQDPSRWPRSQADPNSAIHFSCFSMSEGETL 375
++ R+ R ADPNS HFSCFS+S ETL
Sbjct: 135 KESKDRFHRPYADPNSVNHFSCFSISAWETL 227
>gb|CV279316.1|CV279316 WS0131.B21_D03 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0131_D03 3', mRNA sequence
Length = 576
Score = 225 bits (485), Expect = 3e-058
Identities = 93/110 (84%), Positives = 102/110 (92%)
Frame = +1 / -1
Query: 109 FESRKALININLRTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRD 288
FESRK LI INL+TV+++ DVNIDEVARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRD
Sbjct: 576 FESRKELIRINLKTVEVSTDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRD 397
Query: 289 EIKNMSKDEIAKDPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
EIKNM KDEI+ DPVAMCDF EAL KVQ+SVSPSDIEKHEKW +EFGSA*
Sbjct: 396 EIKNMPKDEISNDPVAMCDFEEALRKVQRSVSPSDIEKHEKWFSEFGSA* 247
Score = 166 bits (357), Expect = 1e-040
Identities = 78/108 (72%), Positives = 88/108 (81%)
Frame = -2 / +2
Query: 437 QADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRL 258
QADPNS HFSCFS+S+GETL *TF +AS+KSH+ATGS ISS MFLISSRVLPAI RL
Sbjct: 248 QADPNSENHFSCFSISDGETLR*TFRKASSKSHIATGSFEISSLGMFLISSRVLPAIFRL 427
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TVLRLMLISAFLL 114
+PF EAS QT VRSSPL PSVLRATSS+LTS TV +L+LIS+ L
Sbjct: 428 IPFKEASLQTLVRSSPLYPSVLRATSSILTSVDTSTVFKLILISSLRL 571
Score = 108 bits (231), Expect = 3e-023
Identities = 50/110 (45%), Positives = 75/110 (68%)
Frame = -1 / +1
Query: 438 SGRPKLSHPLLMLLYV*RRDTLLNLHQSLHKVAHGHRVLGYLVL*HVLDLVAGLACYLAP 259
SG K PLLMLL +* +T LNL Q K+ H +R++ L+L HVL+ ++ LA YL+P
Sbjct: 247 SG*SKFREPLLMLLDI*WGNTALNLPQGFFKITHCNRIV*NLILRHVLNFISCLARYLSP 426
Query: 258 HAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFK 109
H I I+AN+ IIST++ CP SNL++++I G+L+ +I+ +K L+T K
Sbjct: 427 HPI*RSISANIS*IISTVSICPASNLINIDISGHLDSFQIDPNKLLTTLK 576
>gb|BI127933.1|BI127933 G068P40Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 301
Score = 206 bits (445), Expect = 1e-052
Identities = 85/96 (88%), Positives = 93/96 (96%)
Frame = +1 / +2
Query: 4 SQKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVQIAADVNIDE 183
S+KIVMVLAATNFPWDIDEALRRRLEKRIYIPLP+FESRK LI INL+TV+++ DVNIDE
Sbjct: 14 SRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKDLIRINLKTVEVSTDVNIDE 193
Query: 184 VARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDE 291
VARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDE
Sbjct: 194 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDE 301
Score = 130 bits (279), Expect = 8e-030
Identities = 53/95 (55%), Positives = 71/95 (74%)
Frame = -1 / -1
Query: 288 VAGLACYLAPHAIH*GIAANVCQIISTIAFCPPSNLVDVNICGYLNCSKINVDKCLSTFK 109
++ LA YL+PH I I+AN+ IIST++ CP SNL+D++I G+L+ +IN +K L+T K
Sbjct: 298 ISCLARYLSPHPI*RSISANIS*IISTVSICPASNLIDIDISGHLDSFQINPNKVLTTLK 119
Query: 108 IWKWNINTLLQPSPQCLINIPWKICSSQNHNNFLA 4
IWKWNI TLLQP PQC I +P K+ SSQNH+ F A
Sbjct: 118 IWKWNIYTLLQPPPQCFIYVPRKVSSSQNHHYFPA 14
Score = 103 bits (219), Expect = 2e-021
Identities = 53/87 (60%), Positives = 58/87 (66%)
Frame = +2 / +3
Query: 20 WFWLLQIFHGILMRH*GEGWRSVFIFHFQILKVERHLSTLILEQFR*PQMLTSTRLLGGQ 199
WFWLL F G M+H*G GWRSV+IFHFQIL+V R L LI + R P M S RLL GQ
Sbjct: 30 WFWLLLTFLGT*MKH*GGGWRSVYIFHFQILRVVRTLLGLI*KLSRCPLMSISMRLLAGQ 209
Query: 200 KAIVEMI*QTFAAMPQ*MA*GAR*QAR 280
VEMI* FA M *M *G R*+AR
Sbjct: 210 MDTVEMI*LMFAEMLL*MG*GER*RAR 290
>gb|CV280120.1|CV280120 WS0134.B21_O04 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_O04 3', mRNA sequence
Length = 541
Score = 204 bits (439), Expect = 7e-052
Identities = 83/98 (84%), Positives = 92/98 (93%)
Frame = +1 / -2
Query: 145 RTVQIAADVNIDEVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDEIAK 324
+TV+++ DVNIDEVARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDEIKNM KDEI+
Sbjct: 540 KTVEVSTDVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISN 361
Query: 325 DPVAMCDFVEALVKVQKSVSPSDIEKHEKWMAEFGSA* 438
DPVAMCDF EAL KVQ+SVSPSDIEKHEKW +EFGSA*
Sbjct: 360 DPVAMCDFEEALRKVQRSVSPSDIEKHEKWFSEFGSA* 247
Score = 156 bits (335), Expect = 2e-037
Identities = 73/97 (75%), Positives = 80/97 (82%)
Frame = -2 / +2
Query: 437 QADPNSAIHFSCFSMSEGETLF*TFTRASTKSHMATGSLAISSFDMFLISSRVLPAILRL 258
QADPNS HFSCFS+S+GETL *TF +AS+KSH+ATGS ISS MFLISSRVLPAI RL
Sbjct: 248 QADPNSENHFSCFSISDGETLR*TFRKASSKSHIATGSFEISSLGMFLISSRVLPAIFRL 427
Query: 257 MPFIEASRQTFVRSSPL*PSVLRATSSMLTSAAI*TV 147
+PF EAS QT VRSSPL PSVLRATSS+LTS TV
Sbjct: 428 IPFKEASLQTLVRSSPLYPSVLRATSSILTSVDTSTV 538
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 376,512,373
Number of Sequences: 369679
Number of extensions: 5686572
Number of successful extensions: 95602
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9375858940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)