TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.2
(798 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 131 1e-041
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 131 1e-041
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 129 3e-041
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 129 3e-041
gb|CA823251.1|CA823251 R23A11 two-month-old roots from clon... 104 2e-039
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 100 1e-037
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 114 4e-036
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 115 3e-035
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 118 4e-034
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 109 3e-030
gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populu... 115 3e-025
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 87 3e-023
gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Po... 107 1e-022
gb|DN491604.1|DN491604 V006H08.3pR Populus male catkins cDN... 104 9e-022
gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Po... 101 4e-021
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 73 5e-021
gb|CV244325.1|CV244325 WS0254.B21_F14 PT-MB-N-A-15 Populus ... 101 6e-021
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 131 bits (280), Expect = 7e-030
Identities = 68/150 (45%), Positives = 87/150 (58%)
Frame = -2 / +3
Query: 452 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 273
+S VKE G S T + +A S + G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 237 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 416
Query: 272 PLVETVRLTVSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTG*TMARLTLRKXVC 93
P +ET+R T+ PKFT F R + + + A+ +E L +A L K C
Sbjct: 417 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 596
Query: 92 IQ*LGVP*CCQELKTIASGFHVWSLSVTKS 3
Q*LGVP*C ELKTIASGFH+ SL+ TKS
Sbjct: 597 TQ*LGVP*CIDELKTIASGFHLLSLAFTKS 686
Score = 115 bits (246), Expect(2) = 1e-041
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +1 / -1
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 484 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 305
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + M V L+P+S T+FDL
Sbjct: 304 MLENADKDMDVVLSPYSLTSFDL 236
Score = 74.8 bits (157), Expect(2) = 1e-041
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / -1
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 688 PLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 566
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 131 bits (280), Expect = 7e-030
Identities = 68/150 (45%), Positives = 87/150 (58%)
Frame = -2 / +1
Query: 452 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 273
+S VKE G S T + +A S + G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 226 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 405
Query: 272 PLVETVRLTVSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTG*TMARLTLRKXVC 93
P +ET+R T+ PKFT F R + + + A+ +E L +A L K C
Sbjct: 406 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 585
Query: 92 IQ*LGVP*CCQELKTIASGFHVWSLSVTKS 3
Q*LGVP*C ELKTIASGFH+ SL+ TKS
Sbjct: 586 TQ*LGVP*CIDELKTIASGFHLLSLAFTKS 675
Score = 115 bits (246), Expect(2) = 1e-041
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +1 / -1
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 473 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 294
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + M V L+P+S T+FDL
Sbjct: 293 MLENADKDMDVVLSPYSLTSFDL 225
Score = 74.8 bits (157), Expect(2) = 1e-041
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / -1
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 677 PLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 555
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 129 bits (277), Expect = 2e-029
Identities = 67/150 (44%), Positives = 87/150 (58%)
Frame = -2 / +3
Query: 452 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 273
+S VKE G S T + +A ++ G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 246 KSNEVKEYGESTTSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 425
Query: 272 PLVETVRLTVSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTG*TMARLTLRKXVC 93
P +ET+R T+ PKFT F R + + + A+ +E L +A L K C
Sbjct: 426 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 605
Query: 92 IQ*LGVP*CCQELKTIASGFHVWSLSVTKS 3
Q*LGVP*C ELKTIASGFH+ SL+ TKS
Sbjct: 606 TQ*LGVP*CVDELKTIASGFHLLSLAFTKS 695
Score = 114 bits (244), Expect(2) = 3e-041
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = +1 / -1
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 493 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 314
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
+ NA + M V L+P+S T+FDL
Sbjct: 313 MIENADKDMDVVLSPYSLTSFDL 245
Score = 74.4 bits (156), Expect(2) = 3e-041
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / -1
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 697 PLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGA 575
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 129 bits (277), Expect = 2e-029
Identities = 67/150 (44%), Positives = 87/150 (58%)
Frame = -2 / +3
Query: 452 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 273
+S VKE G S T + +A ++ G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 246 KSNEVKEYGESTTSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 425
Query: 272 PLVETVRLTVSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTG*TMARLTLRKXVC 93
P +ET+R T+ PKFT F R + + + A+ +E L +A L K C
Sbjct: 426 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 605
Query: 92 IQ*LGVP*CCQELKTIASGFHVWSLSVTKS 3
Q*LGVP*C ELKTIASGFH+ SL+ TKS
Sbjct: 606 TQ*LGVP*CVDELKTIASGFHLLSLAFTKS 695
Score = 114 bits (244), Expect(2) = 3e-041
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = +1 / -3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 493 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 314
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
+ NA + M V L+P+S T+FDL
Sbjct: 313 MIENADKDMDVVLSPYSLTSFDL 245
Score = 74.4 bits (156), Expect(2) = 3e-041
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / -3
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 697 PLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGA 575
>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 536
Score = 104 bits (221), Expect(2) = 2e-039
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +1 / +1
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VN G+ V+L VS GLG + GST TVLTS NVMDENSF++PNKV P S
Sbjct: 247 TYLKIKIVNVGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 426
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + M + +AP+S T+ DL
Sbjct: 427 LLENADKDMNIIIAPYSMTSLDL 495
Score = 78.5 bits (165), Expect(2) = 2e-039
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = +1 / +1
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV DND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 40 PLFVNDNDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 162
Score = 77.1 bits (162), Expect(2) = 5e-026
Identities = 38/81 (46%), Positives = 49/81 (60%)
Frame = -2 / -1
Query: 452 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 273
+S V E GA + + +A S L +G TLFG +KEFSS+T +V TV VDP L+P+
Sbjct: 494 KSSEVIEYGAIIMFMSLSAFSSRLRSGTTLFGSVKEFSSITFEEVSTVFVDPDNCELSPN 315
Query: 272 PLVETVRLTVSDPKFTTFTLR 210
P ET+RLT P FT F R
Sbjct: 314 PSTETLRLTCLFPTFTIFIFR 252
Score = 60.6 bits (126), Expect(2) = 5e-026
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = -2 / -1
Query: 125 MARLTLRKXVCIQ*LGVP*CCQELKTIASGFHVWSLSVTKS 3
+A L K C Q*LGVP*C +ELKTIASGFH+ SLS TKS
Sbjct: 164 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSLSFTKS 42
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 99.6 bits (211), Expect(2) = 1e-037
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +1 / +3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG + GST TVLTS NVMDENSF++PNKV P S
Sbjct: 369 TYLKIKIVNFGNRHVNLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 548
Query: 385 QLSNAAEQMQVTLAP 429
L NA + M + +AP
Sbjct: 549 LLENADKDMNIIIAP 593
Score = 77.1 bits (162), Expect(2) = 1e-037
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = +1 / +3
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRAIVHPVNI 144
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A + N+
Sbjct: 162 PLFVNHNDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDANL 305
Score = 76.2 bits (160), Expect(2) = 1e-024
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = -2 / -2
Query: 428 GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRL 249
GA + + +A S L +G TLFG +KEFSS+T +VRTV VDP L+P+P ET R
Sbjct: 592 GAIIMFMSLSAFSSKLRSGTTLFGSVKEFSSITFEEVRTVFVDPDNCELSPNPSTETSRF 413
Query: 248 TVSDPKFTTFTLR 210
T PKFT F R
Sbjct: 412 TCLFPKFTIFIFR 374
Score = 57.0 bits (118), Expect(2) = 1e-024
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = -2 / -2
Query: 125 MARLTLRKXVCIQ*LGVP*CCQELKTIASGFHVWSLSVTKS 3
+A L K C Q*LGVP*C +ELKTIASGFH+ SL TKS
Sbjct: 286 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSL*FTKS 164
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 114 bits (244), Expect = 6e-025
Identities = 58/124 (46%), Positives = 73/124 (58%)
Frame = -2 / -3
Query: 374 GATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTVSDPKFTTFTLRKLFSA 195
G T FG KEFSS+ L +V TV VDP L+P+P +ET+R T+ PKFT F R + +
Sbjct: 457 GTTFFGFGKEFSSIKLEEVSTVFVDPDNCELSPNPTMETLRFTLLFPKFTIFIFR*VLPS 278
Query: 194 SCHVIADAASELEYRELILTG*TMARLTLRKXVCIQ*LGVP*CCQELKTIASGFHVWSLS 15
+ A+ +E L +A L K C Q*LGVP*C ELKTIASG H+ SL+
Sbjct: 277 ELCQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CIDELKTIASGLHLLSLA 98
Query: 14 VTKS 3
TKS
Sbjct: 97 FTKS 86
Score = 84.5 bits (178), Expect(3) = 4e-036
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +1 / +3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAP 375
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF NP KV P
Sbjct: 288 TYLKIKIVNFGNSKVNLKVSIVGLGLSSQLSGSTKTVLTSSNLMDENSFPNPKKVVP 458
Score = 72.5 bits (152), Expect(3) = 4e-036
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +1 / +3
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ W+PDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 84 PLFVNANDRRWSPDAIVFNSSMHYGTPSYWVQKFFRESSGA 206
Score = 32.7 bits (65), Expect(3) = 4e-036
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 379 KSQLSNAAEQMQVTLAPHSFTAFDL 453
++ L NA + M V L+P+S T+FDL
Sbjct: 463 QTTLXNAGKDMDVVLSPYSLTSFDL 537
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 115 bits (246), Expect(2) = 3e-035
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +1 / -3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 477 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 298
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + M V L+P+S T+FDL
Sbjct: 297 MLENADKDMDVVLSPYSLTSFDL 229
Score = 115 bits (245), Expect = 4e-025
Identities = 61/139 (43%), Positives = 78/139 (56%)
Frame = -2 / +2
Query: 452 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 273
+S VKE G S T + +A S + G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 230 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 409
Query: 272 PLVETVRLTVSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTG*TMARLTLRKXVC 93
P +ET+R T+ PKFT F R + + + A+ +E L +A L K C
Sbjct: 410 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 589
Query: 92 IQ*LGVP*CCQELKTIASG 36
Q*LGVP*C ELKTIASG
Sbjct: 590 TQ*LGVP*CIDELKTIASG 646
Score = 53.3 bits (110), Expect(2) = 3e-035
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1 / -3
Query: 34 NPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
+PDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 648 DPDAIVFNSSMHYGTPSYWVQKFFRESSGA 559
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 118 bits (253), Expect = 4e-026
Identities = 59/127 (46%), Positives = 76/127 (59%)
Frame = -2 / -1
Query: 383 LFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTVSDPKFTTFTLRKL 204
++ G T FG KEFSS+ L +V TV VDP L+P+P +ET+R T+ PKFT F R +
Sbjct: 497 VWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR*V 318
Query: 203 FSASCHVIADAASELEYRELILTG*TMARLTLRKXVCIQ*LGVP*CCQELKTIASGFHVW 24
+ + A+ +E L +A L K C Q*LGVP*C ELKTIASGFH+
Sbjct: 317 LPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHLL 138
Query: 23 SLSVTKS 3
SL+ TKS
Sbjct: 137 SLAFTKS 117
Score = 90.9 bits (192), Expect(2) = 4e-034
Identities = 36/64 (56%), Positives = 47/64 (73%)
Frame = +1 / +1
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 319 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 498
Query: 385 QLSN 396
+ N
Sbjct: 499 MIEN 510
Score = 74.4 bits (156), Expect(2) = 4e-034
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / +1
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 115 PLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGA 237
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 109 bits (232), Expect = 3e-023
Identities = 56/122 (45%), Positives = 71/122 (58%)
Frame = -2 / -2
Query: 368 TLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTVSDPKFTTFTLRKLFSASC 189
T FG K SS+ L +V TV VDP L+P+P +ET+R T+ PKFT F R + +
Sbjct: 720 TFFGFAKXXSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR*VLPSEF 541
Query: 188 HVIADAASELEYRELILTG*TMARLTLRKXVCIQ*LGVP*CCQELKTIASGFHVWSLSVT 9
+ A+ +E L +A L K C Q*LGVP*C ELKTIASGFH+ SL+ T
Sbjct: 540 CQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHLLSLAFT 361
Query: 8 KS 3
KS
Sbjct: 360 KS 355
Score = 77.1 bits (162), Expect(2) = 3e-030
Identities = 32/62 (51%), Positives = 42/62 (67%)
Frame = +1 / +2
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MD F+NP KV ++
Sbjct: 557 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDXXXFANPKKVXXAQT 736
Query: 385 QL 390
L
Sbjct: 737 ML 742
Score = 74.8 bits (157), Expect(2) = 3e-030
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1 / +2
Query: 1 PLFVTDNDQTWNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
PLFV ND+ WNPDAIVFNS HYGTPSYW+Q FR + A
Sbjct: 353 PLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGA 475
>gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_D20 3', mRNA sequence
Length = 587
Score = 115 bits (246), Expect = 3e-025
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +1 / -1
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 476 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 297
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + M V L+P+S T+FDL
Sbjct: 296 MLENADKDMDVVLSPYSLTSFDL 228
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 87.2 bits (184), Expect(2) = 3e-023
Identities = 35/60 (58%), Positives = 45/60 (75%)
Frame = +1 / +3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 198 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 377
Score = 41.4 bits (84), Expect(2) = 3e-023
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1 / +3
Query: 52 FNSWQHYGTPSYWMQTXFRRVNRA 123
FNS HYGTPSYW+Q FR + A
Sbjct: 45 FNSSMHYGTPSYWVQKFFRESSGA 116
>gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02037C09 5', mRNA sequence
Length = 426
Score = 107 bits (228), Expect = 1e-022
Identities = 45/83 (54%), Positives = 60/83 (72%)
Frame = +1 / +3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ V+L VS GLG + GST TVLTS NVMDENSF++PNKV P S
Sbjct: 21 TYLKIKIVNFGNRHVSLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 200
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + M + +AP+S T+ DL
Sbjct: 201 LLENADKDMNIIIAPYSLTSLDL 269
>gb|DN491604.1|DN491604 V006H08.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V006H08 3', mRNA sequence
Length = 339
Score = 104 bits (221), Expect = 9e-022
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +1 / -1
Query: 217 VKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSN 396
+K+VNFG+ VNL VST GLG S GS+ TVLT N+M ENSF+NP KV P ++ L N
Sbjct: 339 IKIVNFGNSKVNLRVSTHGLGLSSQLSGSSKTVLTYSNLMHENSFANPKKVVPAQTMLEN 160
Query: 397 AAEQMQVTLAPHSFTAFDL 453
A + M V L P+S T+FDL
Sbjct: 159 ADKHMDVVLFPYSLTSFDL 103
>gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057F02 5', mRNA sequence
Length = 455
Score = 101 bits (216), Expect = 4e-021
Identities = 43/83 (51%), Positives = 58/83 (69%)
Frame = +1 / +3
Query: 205 SFLRVKVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 384
++L++K+VNFG+ V+L VS GLG + GST TVLTS NVMDENS +PNKV P S
Sbjct: 21 TYLKIKIVNFGNRHVSLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSXQDPNKVVPDLS 200
Query: 385 QLSNAAEQMQVTLAPHSFTAFDL 453
L NA + + + +AP+S T+ DL
Sbjct: 201 LLENADKDINIIIAPYSLTSLDL 269
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 73.0 bits (153), Expect(2) = 5e-021
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = +1 / -3
Query: 220 KVVNFGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVA 372
++VNFG+ V+L VS GLG + GST TVLTS NVMDENSF++PNKV+
Sbjct: 66526 QIVNFGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVS 66374
Score = 57.4 bits (119), Expect(2) = 5e-021
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1 / -3
Query: 31 WNPDAIVFNSWQHYGTPSYWMQTXFRRVNRA 123
WNPDAIVFNS HYGTPSYW+ FR + A
Sbjct: 66907 WNPDAIVFNSSMHYGTPSYWVLKFFRESSGA 66815
>gb|CV244325.1|CV244325 WS0254.B21_F14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_F14 3', mRNA sequence
Length = 826
Score = 101 bits (215), Expect = 6e-021
Identities = 43/74 (58%), Positives = 52/74 (70%)
Frame = +1 / -3
Query: 232 FGSDTVNLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQM 411
FG+ VNL VS GLG S GST TVLTS N+MDENSF+NP KV P ++ L NA + M
Sbjct: 452 FGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQTMLENADKDM 273
Query: 412 QVTLAPHSFTAFDL 453
V L+P+S T+FDL
Sbjct: 272 DVVLSPYSLTSFDL 231
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 417,761,108
Number of Sequences: 369679
Number of extensions: 5999247
Number of successful extensions: 56421
Number of sequences better than 1.0e-020: 20
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10347450540
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)