TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 197 5e-057
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 185 1e-054
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 174 3e-054
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 162 2e-053
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 130 6e-053
gb|CA823251.1|CA823251 R23A11 two-month-old roots from clon... 119 4e-052
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 181 2e-049
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 166 6e-049
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 175 2e-045
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 121 7e-038
gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves... 76 1e-029
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 74 7e-029
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 85 7e-026
gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populu... 113 2e-024
gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Po... 108 4e-023
gb|CX179521.1|CX179521 F07_45-71_11.ab1 leaf inoculated wit... 104 9e-022
gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Po... 103 2e-021
gb|DN491604.1|DN491604 V006H08.3pR Populus male catkins cDN... 101 4e-021
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 197 bits (425), Expect = 6e-050
Identities = 100/189 (52%), Positives = 122/189 (64%)
Frame = +3 / +3
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 392
+S VKE G S T + +A S + G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 237 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 416
Query: 393 PLVETVRLTGSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTGWIMAPLDSRKIVC 572
P +ET+R T PKFT F R + + + A+ +E L +APLDS K C
Sbjct: 417 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 596
Query: 573 IQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRKAASANEARRLP 752
Q*LGVP*C ELKTIASGFH+ SL+FTKSGA*LAI TISLFFS P+RK ASA+ A+RLP
Sbjct: 597 TQ*LGVP*CIDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRKPASASAAKRLP 776
Query: 753 LPASLLQTA 779
+PAS TA
Sbjct: 777 VPASFPVTA 803
Score = 128 bits (274), Expect(2) = 5e-057
Identities = 54/81 (66%), Positives = 58/81 (71%)
Frame = -3 / -1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 802 AVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSM 623
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
HYGTPSYW+Q FRESSGA +
Sbjct: 622 HYGTPSYWVQKFFRESSGATL 560
Score = 113 bits (241), Expect(2) = 5e-057
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = -3 / -1
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 484 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 305
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + M V L+P+S T+FDL
Sbjct: 304 MLENADKDMDVVLSPYSLTSFDL 236
Score = 90.9 bits (192), Expect(2) = 2e-025
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +2 / +2
Query: 545 AA*LAENRLHPVARSSIVLPGVEDDSVRVPRLVIVVHEEWCVTCHLNNITVLLQTSEESS 724
+ *L+E LHPVARSSIV VED+ + +P +I +H++WC+ CHL NI VL Q ++E+S
Sbjct: 569 ST*LSEEFLHPVARSSIVH*RVEDNRIWIPPSIIGIHKKWCIACHLYNIAVLFQPNKETS 748
Query: 725 FSQRSKKTASTRVTSPDS 778
FS+ S KT+ R+ S S
Sbjct: 749 FSECS*KTSCARIFSGHS 802
Score = 44.6 bits (91), Expect(2) = 2e-025
Identities = 23/81 (28%), Positives = 45/81 (55%)
Frame = +2 / +2
Query: 212 QIEGGEGVRSQRDLHLLRGVAQLAFHRRNLVRVTEGVLVHDVARREDGGG*SQRVDAGPE 391
QI+ G+ + ++H+ + + + +L + EG+LVH V R E *S+++ A P+
Sbjct: 236 QIK*S*GIWREYNIHVFVSILEHSLCWHHLFWIREGILVH*VRRSEHSFC*SRQL*AEPQ 415
Query: 392 PARGDREANGVRPEVHDLHSQ 454
G+ E + P++H+L+ Q
Sbjct: 416 SINGNFEIHFAVPKIHNLYFQ 478
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 185 bits (398), Expect = 3e-046
Identities = 93/181 (51%), Positives = 116/181 (64%)
Frame = +3 / +3
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 392
+S VKE G S T + +A ++ G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 246 KSNEVKEYGESTTSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 425
Query: 393 PLVETVRLTGSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTGWIMAPLDSRKIVC 572
P +ET+R T PKFT F R + + + A+ +E L +APLDS K C
Sbjct: 426 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 605
Query: 573 IQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRKAASANEARRLP 752
Q*LGVP*C ELKTIASGFH+ SL+FTKSGA*LAI TISLFFS P+R ASA+ A+RLP
Sbjct: 606 TQ*LGVP*CVDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRNPASASAAKRLP 785
Query: 753 L 755
+
Sbjct: 786 V 788
Score = 121 bits (259), Expect(2) = 1e-054
Identities = 50/74 (67%), Positives = 54/74 (72%)
Frame = -3 / -1
Query: 757 GRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSY 578
G G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS HYGTPSY
Sbjct: 790 GTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSTHYGTPSY 611
Query: 577 WMQTIFRESSGAMI 536
W+Q FRESSGA +
Sbjct: 610 WVQKFFRESSGATL 569
Score = 112 bits (239), Expect(2) = 1e-054
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = -3 / -1
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 493 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 314
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
+ NA + M V L+P+S T+FDL
Sbjct: 313 MIENADKDMDVVLSPYSLTSFDL 245
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 174 bits (375), Expect = 5e-043
Identities = 89/173 (51%), Positives = 109/173 (63%)
Frame = +3 / +3
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 392
+S VKE G S T + +A ++ G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 246 KSNEVKEYGESTTSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 425
Query: 393 PLVETVRLTGSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTGWIMAPLDSRKIVC 572
P +ET+R T PKFT F R + + + A+ +E L +APLDS K C
Sbjct: 426 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 605
Query: 573 IQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRKAASA 731
Q*LGVP*C ELKTIASGFH+ SL+FTKSGA*LAI TISLFFS P+R ASA
Sbjct: 606 TQ*LGVP*CVDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRNPASA 764
Score = 120 bits (256), Expect(2) = 3e-054
Identities = 47/58 (81%), Positives = 51/58 (87%)
Frame = -3 / -3
Query: 709 GLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS HYGTPSYW+Q FRESSGA +
Sbjct: 742 GLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGATL 569
Score = 112 bits (239), Expect(2) = 3e-054
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = -3 / -3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 493 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 314
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
+ NA + M V L+P+S T+FDL
Sbjct: 313 MIENADKDMDVVLSPYSLTSFDL 245
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 162 bits (349), Expect = 2e-039
Identities = 84/163 (51%), Positives = 102/163 (62%)
Frame = +3 / +1
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 392
+S VKE G S T + +A S + G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 226 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 405
Query: 393 PLVETVRLTGSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTGWIMAPLDSRKIVC 572
P +ET+R T PKFT F R + + + A+ +E L +APLDS K C
Sbjct: 406 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 585
Query: 573 IQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFF 701
Q*LGVP*C ELKTIASGFH+ SL+FTKSGA*LAI TISLFF
Sbjct: 586 TQ*LGVP*CIDELKTIASGFHLLSLAFTKSGA*LAISTISLFF 714
Score = 116 bits (247), Expect(2) = 2e-053
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -3 / -1
Query: 703 EKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
EKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS HYGTPSYW+Q FRESSGA +
Sbjct: 716 EKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATL 549
Score = 113 bits (241), Expect(2) = 2e-053
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = -3 / -1
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 473 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 294
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + M V L+P+S T+FDL
Sbjct: 293 MLENADKDMDVVLSPYSLTSFDL 225
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 130 bits (279), Expect(2) = 6e-053
Identities = 55/86 (63%), Positives = 60/86 (69%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 48 AVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNHNDRRWNPDAIVFNSSM 227
Query: 598 HYGTPSYWMQTIFRESSGAMIHPVNI 521
HYGTPSYW+Q FRESSGA + N+
Sbjct: 228 HYGTPSYWVQKFFRESSGATLLDANL 305
Score = 122 bits (262), Expect(2) = 5e-044
Identities = 58/80 (72%), Positives = 65/80 (81%)
Frame = +3 / -2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K C Q*LGVP*C +ELKTIASGFH+ SL FTKSGA*LAI TISLFFS P+R
Sbjct: 286 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSL*FTKSGA*LAISTISLFFSSPMRN 107
Query: 720 AASANEARRLPLPASLLQTA 779
ASA+ A+RLP+PAS TA
Sbjct: 106 PASASAAKRLPVPASFPVTA 47
Score = 97.3 bits (206), Expect(2) = 6e-053
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = -3 / +3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG + GST TVLTS NVMDENSF++PNKV P S
Sbjct: 369 TYLKIKIVNFGNRHVNLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 548
Query: 280 QLSNAAEQMQVTLAP 236
L NA + M + +AP
Sbjct: 549 LLENADKDMNIIIAP 593
Score = 90.0 bits (190), Expect(2) = 1e-022
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +2 / -1
Query: 554 LAENRLHPVARSSIVLPGVEDDSVRVPRLVIVVHEEWCVTCHLNNITVLLQTSEESSFSQ 733
L E LHPVA SSIV GVED+ + +P +IV+HE+W V CHL+NITVL Q +EESSFS+
Sbjct: 272 LPEEFLHPVAWSSIVH*GVEDNCIWIPPPIIVIHEKWRVACHLHNITVLFQPNEESSFSK 93
Query: 734 RSKKTASTRVTSPDS 778
KT+ + S S
Sbjct: 92 CC*KTSCASIFSGHS 48
Score = 75.3 bits (158), Expect(2) = 5e-044
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = +3 / -2
Query: 237 GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRL 416
GA + + +A S L +G TLFG +KEFSS+T +VRTV VDP L+P+P ET R
Sbjct: 592 GAIIMFMSLSAFSSKLRSGTTLFGSVKEFSSITFEEVRTVFVDPDNCELSPNPSTETSRF 413
Query: 417 TGSDPKFTTFTLR 455
T PKFT F R
Sbjct: 412 TCLFPKFTIFIFR 374
Score = 36.3 bits (73), Expect(2) = 1e-022
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +2 / -1
Query: 239 SQRDLHLLRGVAQLAFHRRNLVRVTEGVLVHDVARREDGGG*SQRVDAGPEPARGDREAN 418
S ++H+ + + + V + EG+LVH + R ED *S+++ P+ + E +
Sbjct: 590 SDYNVHVFVSILKQTEVWHHFVWIREGILVHYIRRSEDSFC*SRQL*VEPQSIN*NFEIH 411
Query: 419 GVRPEVHDLHSQ 454
P++H+L+ Q
Sbjct: 410 VPVPKIHNLYFQ 375
>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 536
Score = 119 bits (255), Expect(2) = 4e-052
Identities = 46/56 (82%), Positives = 50/56 (89%)
Frame = -3 / +1
Query: 703 EKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
EKNSDIV+MASYAPLFVNDND+ WNPDAIVFNS HYGTPSYW+Q FRESSGA +
Sbjct: 1 EKNSDIVEMASYAPLFVNDNDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATL 168
Score = 105 bits (224), Expect(2) = 4e-052
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = -3 / +1
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VN G+ VSL VS GLG + GST TVLTS NVMDENSF++PNKV P S
Sbjct: 247 TYLKIKIVNVGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 426
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + M + +AP+S T+ DL
Sbjct: 427 LLENADKDMNIIIAPYSMTSLDL 495
Score = 95.0 bits (201), Expect(2) = 6e-036
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFF 701
+APLDS K C Q*LGVP*C +ELKTIASGFH+ SLSFTKSGA*LAI TISLFF
Sbjct: 164 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSLSFTKSGA*LAISTISLFF 3
Score = 76.2 bits (160), Expect(2) = 6e-036
Identities = 38/81 (46%), Positives = 49/81 (60%)
Frame = +3 / -1
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 392
+S V E GA + + +A S L +G TLFG +KEFSS+T +V TV VDP L+P+
Sbjct: 494 KSSEVIEYGAIIMFMSLSAFSSRLRSGTTLFGSVKEFSSITFEEVSTVFVDPDNCELSPN 315
Query: 393 PLVETVRLTGSDPKFTTFTLR 455
P ET+RLT P FT F R
Sbjct: 314 PSTETLRLTCLFPTFTIFIFR 252
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 181 bits (389), Expect = 6e-045
Identities = 88/161 (54%), Positives = 108/161 (67%)
Frame = +3 / -1
Query: 282 LFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTGSDPKFTTFTLRKL 461
++ G T FG KEFSS+ L +V TV VDP L+P+P +ET+R T PKFT F R +
Sbjct: 497 VWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR*V 318
Query: 462 FSASCHVIADAASELEYRELILTGWIMAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVW 641
+ + A+ +E L +APLDS K C Q*LGVP*C ELKTIASGFH+
Sbjct: 317 LPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHLL 138
Query: 642 SLSFTKSGA*LAI*TISLFFSRPVRKAASANEARRLPLPAS 764
SL+FTKSGA*LAI TISLFFS P+R ASA+ A+RLP+PAS
Sbjct: 137 SLAFTKSGA*LAISTISLFFSSPIRNPASASAAKRLPVPAS 15
Score = 127 bits (273), Expect(2) = 2e-049
Identities = 54/81 (66%), Positives = 58/81 (71%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 1 AVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSST 180
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
HYGTPSYW+Q FRESSGA +
Sbjct: 181 HYGTPSYWVQKFFRESSGATL 243
Score = 88.6 bits (187), Expect(2) = 2e-049
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = -3 / +1
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 319 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 498
Query: 280 QLSN 269
+ N
Sbjct: 499 MIEN 510
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 166 bits (358), Expect = 1e-040
Identities = 83/152 (54%), Positives = 100/152 (65%)
Frame = +3 / -3
Query: 291 GATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTGSDPKFTTFTLRKLFSA 470
G T FG KEFSS+ L +V TV VDP L+P+P +ET+R T PKFT F R + +
Sbjct: 457 GTTFFGFGKEFSSIKLEEVSTVFVDPDNCELSPNPTMETLRFTLLFPKFTIFIFR*VLPS 278
Query: 471 SCHVIADAASELEYRELILTGWIMAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLS 650
+ A+ +E L +APLDS K C Q*LGVP*C ELKTIASG H+ SL+
Sbjct: 277 ELCQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CIDELKTIASGLHLLSLA 98
Query: 651 FTKSGA*LAI*TISLFFSRPVRKAASANEARR 746
FTKSGA*LAI TISLFFS P+RK ASA+ A+R
Sbjct: 97 FTKSGA*LAISTISLFFSSPIRKPASASAAKR 2
Score = 118 bits (252), Expect(3) = 6e-049
Identities = 46/58 (79%), Positives = 51/58 (87%)
Frame = -3 / +3
Query: 709 GLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
GLEKNSDIV+MASYAPLFVN ND+ W+PDAIVFNS HYGTPSYW+Q FRESSGA +
Sbjct: 39 GLEKNSDIVEMASYAPLFVNANDRRWSPDAIVFNSSMHYGTPSYWVQKFFRESSGATL 212
Score = 83.1 bits (175), Expect(2) = 4e-021
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +2 / -2
Query: 545 AA*LAENRLHPVARSSIVLPGVEDDSVRVPRLVIVVHEEWCVTCHLNNITVLLQTSEESS 724
+ *L+E LHPVARSSIV VED+ + P +I +H++WC+ CHL+NI VL Q ++E+S
Sbjct: 203 ST*LSEEFLHPVARSSIVH*RVEDNRIWTPPPIIGIHKKWCIACHLHNIAVLFQPNKETS 24
Query: 725 FSQRSKK 745
FS+ S K
Sbjct: 23 FSECS*K 3
Score = 82.2 bits (173), Expect(3) = 6e-049
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = -3 / +3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAP 290
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF NP KV P
Sbjct: 288 TYLKIKIVNFGNSKVNLKVSIVGLGLSSQLSGSTKTVLTSSNLMDENSFPNPKKVVP 458
Score = 38.2 bits (77), Expect(2) = 4e-021
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2 / -2
Query: 296 NLVRVTEGVLVHDVARREDGGG*SQRVDAGPEPARGDREANGVRPEVHDLHSQ 454
+L + EG+L+H V R E *S+++ A P+ G+ E + P++H+L+ Q
Sbjct: 452 HLFWIREGILIH*VRRSEHSFC*SRQL*AEPQSNNGNFEIHFAVPKIHNLYFQ 294
Score = 32.7 bits (65), Expect(3) = 6e-049
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3 / +1
Query: 286 KSQLSNAAEQMQVTLAPHSFTAFDL 212
++ L NA + M V L+P+S T+FDL
Sbjct: 463 QTTLXNAGKDMDVVLSPYSLTSFDL 537
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 175 bits (377), Expect = 3e-043
Identities = 88/161 (54%), Positives = 106/161 (65%)
Frame = +3 / -2
Query: 297 TLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTGSDPKFTTFTLRKLFSASC 476
T FG K SS+ L +V TV VDP L+P+P +ET+R T PKFT F R + +
Sbjct: 720 TFFGFAKXXSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR*VLPSEF 541
Query: 477 HVIADAASELEYRELILTGWIMAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFT 656
+ A+ +E L +APLDS K C Q*LGVP*C ELKTIASGFH+ SL+FT
Sbjct: 540 CQVIADATSVEEFVCSLASRRVAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHLLSLAFT 361
Query: 657 KSGA*LAI*TISLFFSRPVRKAASANEARRLPLPASLLQTA 779
KSGA*LAI TISLFFS P+RK ASA+ A+RLP+PAS TA
Sbjct: 360 KSGA*LAISTISLFFSSPIRKPASASAAKRLPVPASFPVTA 238
Score = 128 bits (274), Expect(2) = 2e-045
Identities = 54/81 (66%), Positives = 58/81 (71%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 239 AVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSM 418
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
HYGTPSYW+Q FRESSGA +
Sbjct: 419 HYGTPSYWVQKFFRESSGATL 481
Score = 74.8 bits (157), Expect(2) = 2e-045
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = -3 / +2
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MD F+NP KV ++
Sbjct: 557 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDXXXFANPKKVXXAQT 736
Query: 280 QL 275
L
Sbjct: 737 ML 742
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 121 bits (259), Expect = 5e-027
Identities = 64/139 (46%), Positives = 80/139 (57%)
Frame = +3 / +2
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAPS 392
+S VKE G S T + +A S + G T FG KEFSS+ L +V TV VDP L+P+
Sbjct: 230 KSNEVKEYGESTTSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPN 409
Query: 393 PLVETVRLTGSDPKFTTFTLRKLFSASCHVIADAASELEYRELILTGWIMAPLDSRKIVC 572
P +ET+R T PKFT F R + + + A+ +E L +APLDS K C
Sbjct: 410 PSMETLRFTLLFPKFTIFIFR*VLPSEFCQVIADATSVEEFVCSLASRRVAPLDSLKNFC 589
Query: 573 IQ*LGVP*CCQELKTIASG 629
Q*LGVP*C ELKTIASG
Sbjct: 590 TQ*LGVP*CIDELKTIASG 646
Score = 113 bits (241), Expect(2) = 7e-038
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = -3 / -3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 477 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 298
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + M V L+P+S T+FDL
Sbjct: 297 MLENADKDMDVVLSPYSLTSFDL 229
Score = 64.3 bits (134), Expect(2) = 7e-038
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = -3 / -3
Query: 631 NPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
+PDAIVFNS HYGTPSYW+Q FRESSGA +
Sbjct: 648 DPDAIVFNSSMHYGTPSYWVQKFFRESSGATL 553
>gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I004P65 5', mRNA sequence
Length = 486
Score = 76.2 bits (160), Expect(3) = 1e-025
Identities = 36/51 (70%), Positives = 41/51 (80%)
Frame = +3 / -3
Query: 627 GFHVWSLSFTKSGA*LAI*TISLFFSRPVRKAASANEARRLPLPASLLQTA 779
GFH+ SL FTKSGA*LAI TISLFFS P+R ASA+ A+RLP+PAS TA
Sbjct: 202 GFHLLSL*FTKSGA*LAISTISLFFSSPMRNPASASAAKRLPVPASFPVTA 50
Score = 71.2 bits (149), Expect(3) = 1e-029
Identities = 31/51 (60%), Positives = 33/51 (64%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNP 626
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNP
Sbjct: 51 AVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNHNDRRWNP 203
Score = 60.2 bits (125), Expect(3) = 1e-029
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = -3 / +2
Query: 625 DAIVFNSWQHYGTPSYWMQTIFRESSGAMIHPVNI 521
+AIVFNS HYGTPSYW+Q FRESSGA + N+
Sbjct: 203 NAIVFNSSMHYGTPSYWVQKFFRESSGATLLDANL 307
Score = 47.8 bits (98), Expect(3) = 1e-025
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIA 623
+APLDS K C Q*LGVP*C +ELKTIA
Sbjct: 288 VAPLDSLKNFCTQ*LGVP*CIEELKTIA 205
Score = 36.3 bits (73), Expect(3) = 1e-029
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -3 / +2
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASV 377
++L++K+VNFG+ V+L VS G GA +
Sbjct: 371 TYLKIKIVNFGNRHVNLEVSVDGFGAQL 454
Score = 29.9 bits (59), Expect(3) = 1e-025
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -1
Query: 384 APSPLVETVRLTGSDPKFTTFTLR 455
AP+P ET R T PKFT F R
Sbjct: 447 APNPSTETSRFTCLFPKFTIFIFR 376
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 74.4 bits (156), Expect(3) = 1e-027
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -3 / -3
Query: 445 KVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVA 293
++VNFG+ VSL VS GLG + GST TVLTS NVMDENSF++PNKV+
Sbjct: 66526 QIVNFGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVS 66374
Score = 68.4 bits (143), Expect(3) = 1e-027
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = -3 / -3
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
WNPDAIVFNS HYGTPSYW+ FRESSGA +
Sbjct: 66907 WNPDAIVFNSSMHYGTPSYWVLKFFRESSGATL 66809
Score = 63.4 bits (132), Expect(4) = 7e-029
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +3 / +3
Query: 297 TLFGLLKEFSSMTLPDVRTVAVDPSALTLAPSPLVETVRLTGSDPKFT 440
TLFG +KEFSS+T +V TV VDP L+P+P ET+RLT PKFT
Sbjct: 66378 TLFGSVKEFSSITFEEVSTVFVDPDNCELSPNPSTETLRLTCLFPKFT 66521
Score = 54.7 bits (113), Expect(4) = 7e-029
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +3 / +3
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHV 638
+APLDS K Q*LGVP*C +ELKTIASGFH+
Sbjct: 66813 VAPLDSLKNFSTQ*LGVP*CIEELKTIASGFHL 66911
Score = 47.3 bits (97), Expect(4) = 7e-029
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2 / +2
Query: 617 DSVRVPRLVIVVHEEWCVTCHLNNITVL 700
+S+R+ VIV+HE+WCV CHL+NIT +
Sbjct: 66995 NSMRLVPPVIVIHEKWCVACHLHNITAM 67078
Score = 41.8 bits (85), Expect(4) = 7e-029
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3 / +2
Query: 693 LFFSRPVRKAASANEARRLPLPASLLQTA 779
LFFS P+R ASA+ A+RLP+PAS TA
Sbjct: 67358 LFFSSPMRNPASASAAKRLPVPASFPVTA 67444
Score = 35.9 bits (72), Expect(3) = 1e-027
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -1 / -1
Query: 693 VILFRWQVTHHSS*TTMT 640
VIL+RWQ THH S* TMT
Sbjct: 67071 VILWRWQATHHFS*MTMT 67018
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 84.9 bits (179), Expect(2) = 7e-026
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = -3 / +3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 198 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 377
Score = 52.4 bits (108), Expect(2) = 7e-026
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -3 / +3
Query: 613 FNSWQHYGTPSYWMQTIFRESSGAMI 536
FNS HYGTPSYW+Q FRESSGA +
Sbjct: 45 FNSSMHYGTPSYWVQKFFRESSGATL 122
>gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_D20 3', mRNA sequence
Length = 587
Score = 113 bits (241), Expect = 2e-024
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = -3 / -1
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ V+L VS GLG S GST TVLTS N+MDENSF+NP KV P ++
Sbjct: 476 TYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVPAQT 297
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + M V L+P+S T+FDL
Sbjct: 296 MLENADKDMDVVLSPYSLTSFDL 228
>gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02037C09 5', mRNA sequence
Length = 426
Score = 108 bits (231), Expect = 4e-023
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = -3 / +3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ VSL VS GLG + GST TVLTS NVMDENSF++PNKV P S
Sbjct: 21 TYLKIKIVNFGNRHVSLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVVPDLS 200
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + M + +AP+S T+ DL
Sbjct: 201 LLENADKDMNIIIAPYSLTSLDL 269
>gb|CX179521.1|CX179521 F07_45-71_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 686
Score = 104 bits (221), Expect = 9e-022
Identities = 49/67 (73%), Positives = 55/67 (82%)
Frame = +3 / -1
Query: 579 *LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRKAASANEARRLPLP 758
*LGVP*C E KTIASGFH+ SL+FTKSGA*LAI TISLFFS P+R ASA+ A+RLP+P
Sbjct: 686 *LGVP*CVDE*KTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRNPASASAAKRLPVP 507
Query: 759 ASLLQTA 779
AS TA
Sbjct: 506 ASFPVTA 486
>gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057F02 5', mRNA sequence
Length = 455
Score = 103 bits (219), Expect = 2e-021
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = -3 / +3
Query: 460 SFLRVKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKS 281
++L++K+VNFG+ VSL VS GLG + GST TVLTS NVMDENS +PNKV P S
Sbjct: 21 TYLKIKIVNFGNRHVSLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSXQDPNKVVPDLS 200
Query: 280 QLSNAAEQMQVTLAPHSFTAFDL 212
L NA + + + +AP+S T+ DL
Sbjct: 201 LLENADKDINIIIAPYSLTSLDL 269
>gb|DN491604.1|DN491604 V006H08.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V006H08 3', mRNA sequence
Length = 339
Score = 101 bits (216), Expect = 4e-021
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = -3 / -1
Query: 448 VKVVNFGSDPVSLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSN 269
+K+VNFG+ V+L VST GLG S GS+ TVLT N+M ENSF+NP KV P ++ L N
Sbjct: 339 IKIVNFGNSKVNLRVSTHGLGLSSQLSGSSKTVLTYSNLMHENSFANPKKVVPAQTMLEN 160
Query: 268 AAEQMQVTLAPHSFTAFDL 212
A + M V L P+S T+FDL
Sbjct: 159 ADKHMDVVLFPYSLTSFDL 103
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 384,711,326
Number of Sequences: 369679
Number of extensions: 5304490
Number of successful extensions: 72618
Number of sequences better than 1.0e-020: 21
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10055973060
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)