TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1724818.2.1
(1089 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DV465025.1|DV465025 MTUNUL1.P34.A05 NUL Populus fremonti... 210 1e-066
gb|DV466551.1|DV466551 MTUNUL1.P7.B04 NUL Populus fremontii... 144 1e-066
gb|AJ777287.1|AJ777287 AJ777287 Populus euphratica root 3-6... 251 5e-066
gb|DT508681.1|DT508681 WS02421.BR_K08 PTxD-ICC-N-A-14 Popul... 172 9e-063
gb|CF119141.1|CF119141 MTU10CS.P14.A08 Aspen stem cDNA Libr... 204 1e-057
gb|CA932298.1|CA932298 MTU5CS.P11.B09 Aspen stem cDNA Libra... 204 6e-052
gb|DV463809.1|DV463809 MTUNUL1.P2.F09 NUL Populus fremontii... 201 8e-051
gb|CV227579.1|CV227579 WS0167.B21_J13 PT-DX-A-7 Populus tri... 193 2e-048
gb|DT506655.1|DT506655 WS02416.BR_C14 PTxD-ICC-N-A-14 Popul... 193 2e-048
gb|DT511324.1|DT511324 WS02416.B21_C14 PTxD-ICC-N-A-14 Popu... 193 2e-048
gb|DT519122.1|DT519122 WS02440.B21_F15 PTxD-ICC-N-A-14 Popu... 193 2e-048
gb|BU898213.1|BU898213 X076F02 Populus wood cDNA library Po... 180 2e-044
gb|CV245618.1|CV245618 WS0257.B21_O19 PT-MB-N-A-15 Populus ... 180 2e-044
gb|DN489922.1|DN489922 T093D11.3pR Populus shoot meristem c... 127 4e-044
gb|AI167086.1|AI167086 xylem.est.854 Poplar xylem Lambda ZA... 130 3e-039
gb|BU836996.1|BU836996 T093D11 Populus apical shoot cDNA li... 105 1e-037
gb|DN499850.1|DN499850 T093D11.5pR Populus shoot meristem c... 101 1e-036
gb|DT509890.1|DT509890 WS02425.BR_A09 PTxD-ICC-N-A-14 Popul... 70 5e-032
gb|DT514511.1|DT514511 WS02425.B21_A09 PTxD-ICC-N-A-14 Popu... 70 2e-030
gb|DV464808.1|DV464808 MTUNUL1.P31.A09 NUL Populus fremonti... 100 5e-028
gb|CN520159.1|CN520159 GQ0106.B3_K12 GQ010 Populus trichoca... 96 1e-024
gb|BU888292.1|BU888292 P006B07 Populus petioles cDNA librar... 74 3e-024
gb|DT481202.1|DT481202 WS02531.BR_D05 PT-MB-N-A-15 Populus ... 96 6e-024
gb|DT496711.1|DT496711 WS01124.BR_D22 PT-P-FL-A-2 Populus t... 82 1e-022
>gb|DV465025.1|DV465025 MTUNUL1.P34.A05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 850
Score = 210 bits (453), Expect(2) = 1e-066
Identities = 85/153 (55%), Positives = 108/153 (70%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNR CG+ SNNRFVG FP+VVL+LP L YLDLR+N+F
Sbjct: 391 DLALIHLNSNRLCGIIPQSLTNLSLLYELDVSNNRFVGPFPSVVLSLPMLTYLDLRYNEF 570
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF + +DAI +N+NR +PA LG + ASV+V+A+N GC+PPSI +A T
Sbjct: 571 EGPLPPQLFQKKIDAIFINNNRFTSAVPAFLGGTSASVVVIANNNFKGCLPPSIANLADT 750
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGN 881
L E++LI+ LTGC+PP+VG L KL V DVS N
Sbjct: 751 LEELLLINTSLTGCLPPEVGYLYKLRVLDVSHN 849
Score = 64.3 bits (134), Expect(2) = 1e-066
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAV 354
R I+SDP+NFT+NW GP+VC+Y GIYCA D + V
Sbjct: 205 RRVIYSDPNNFTTNWVGPDVCSYKGIYCATATDDPKIRV 321
>gb|DV466551.1|DV466551 MTUNUL1.P7.B04 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 922
Score = 144 bits (310), Expect(5) = 1e-066
Identities = 58/100 (58%), Positives = 74/100 (74%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LP L+YLDLRFN+FEG +P LFD+ LDAI +N NR +P N
Sbjct: 446 SNNRFAGRFPYVVLDLPKLKYLDLRFNEFEGDLPKELFDKDLDAIFINHNRFALELPDNF 625
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDL 815
GNSP SV+VLA+N+ GC P S+ M+ TLNE++L+++ L
Sbjct: 626 GNSPVSVIVLANNKFHGCFPTSLVNMSKTLNEVILMNNGL 745
Score = 73.5 bits (154), Expect(5) = 1e-066
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +3 / +3
Query: 822 CVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
C+P ++GLL K+TVFDVS N L G LP +G M L+ LNVA N+L G +P +VC
Sbjct: 753 CLPREIGLLKKVTVFDVSNNKLFGSLPDNIGEMESLELLNVAHNMLSGIIPGSVC 917
Score = 51.0 bits (105), Expect(5) = 1e-066
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
+ AI SDP N TSNW G +VC Y G++CA
Sbjct: 167 KLAIISDPLNLTSNWVGSDVCNYTGVFCA 253
Score = 33.6 bits (67), Expect(5) = 1e-066
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
D+AL H+NSNRFCG
Sbjct: 353 DIALFHVNSNRFCG 394
Score = 26.3 bits (51), Expect(5) = 1e-066
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
NH D+AGH+ A+L L
Sbjct: 302 NHGDMAGHLVAELGL 346
>gb|AJ777287.1|AJ777287 AJ777287 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400025G06F1, mRNA sequence
Length = 644
Score = 251 bits (543), Expect = 5e-066
Identities = 101/188 (53%), Positives = 134/188 (71%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DLAL+HLNSNR CG+ SNNRFVG FP+VVL+LP L YLD+R+N+F
Sbjct: 35 DLALIHLNSNRLCGIIPQTLTNLSLLYELDVSNNRFVGPFPSVVLSLPMLTYLDIRYNEF 214
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
EGP+PP LF + +DAI +N+NR +PA LG + ASV+V+A+N GC+PPSI +A T
Sbjct: 215 EGPLPPQLFQKKIDAIFINNNRFTSAVPAFLGGTSASVVVIANNNFKGCLPPSIANLADT 394
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
L E++LI+ +LTGC+PP+VG L KL V DVS N + GP+P ++ G+A L+QLN+A NL+
Sbjct: 395 LEELLLINTNLTGCLPPEVGYLYKLRVLDVSQNKIVGPIPYSLSGLAHLEQLNLAHNLMT 574
Query: 963 GPVPSAVC 986
G VP VC
Sbjct: 575 GIVPQGVC 598
>gb|DT508681.1|DT508681 WS02421.BR_K08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_K08 5', mRNA sequence
Length = 874
Score = 172 bits (371), Expect(4) = 9e-063
Identities = 66/120 (55%), Positives = 92/120 (76%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN+F G FP+VVL+LPSL++LD+R+N+F G IP LFD+ LDA+ +N+N+ + +P NL
Sbjct: 511 SNNQFSGKFPSVVLSLPSLKFLDIRYNEFRGKIPSKLFDKNLDALFINNNKFQSSVPKNL 690
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G SP SV+VLA+N C P S+ +MA TL+EI+L + LTGC+P +GL+ +LTVFDVS
Sbjct: 691 GKSPVSVIVLANNNFNSCFPSSLTKMAGTLDEIILTNMGLTGCLPSDIGLMNQLTVFDVS 870
Score = 69.8 bits (146), Expect(4) = 9e-063
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +1 / +1
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI SDP NFTSNW GPNVC Y G+YCAP P D
Sbjct: 238 AITSDPKNFTSNWCGPNVCNYTGVYCAPAPDD 333
Score = 29.9 bits (59), Expect(4) = 9e-063
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 418 DLALFHINSNRFFG 459
Score = 25.8 bits (50), Expect(4) = 9e-063
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHA IAG +P DL L
Sbjct: 367 NHAKIAGSLPEDLGL 411
>gb|CF119141.1|CF119141 MTU10CS.P14.A08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 758
Score = 204 bits (439), Expect(2) = 1e-057
Identities = 89/179 (49%), Positives = 115/179 (64%)
Frame = +3 / -3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL+LLHLNSNRF G SNN F G FP V L +P+L YLDLRFN F
Sbjct: 540 DLSLLHLNSNRFSGTLPDTFKDLISLQELDLSNNHFSGPFPTVTLYIPNLMYLDLRFNSF 361
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
GPIP +F++ LDAI LN+N+ IP NLGNSPASV+ LA+N+L G IP S G M++
Sbjct: 360 SGPIPEDVFNKKLDAIFLNNNQFDSQIPQNLGNSPASVINLANNKLSGNIPASSGLMSSK 181
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLL 959
+ EI+ +++ LTGC+P VGL T++ V DVS N L G LP + + ++ LN+A N L
Sbjct: 180 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKL 4
Score = 40.5 bits (82), Expect(2) = 1e-057
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1 / -3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
++AI DP W G +VCAY G++C D
Sbjct: 726 KSAITDDPLKVLDTWVGTDVCAYKGVFCVDPQDD 625
>gb|CA932298.1|CA932298 MTU5CS.P11.B09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 609
Score = 204 bits (441), Expect = 6e-052
Identities = 89/181 (49%), Positives = 116/181 (64%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL+LLHL+SNRF G SNN F G FP V L +P+L YLDLRFN F
Sbjct: 546 DLSLLHLDSNRFSGTLPDTFKDLISLQELDLSNNHFSGPFPTVTLYIPNLMYLDLRFNSF 367
Query: 603 EGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAAT 782
GPIP +F++ LDAI LN+N+ IP NLGNSPASV+ LA+N+L G IP S G M++
Sbjct: 366 SGPIPEDVFNKKLDAIFLNNNQFDSQIPQNLGNSPASVINLANNKLSGNIPASFGLMSSK 187
Query: 783 LNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLR 962
+ EI+ +++ LTGC+P VGL T++ V DVS N L G LP + + ++ LN+A N L
Sbjct: 186 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 7
Query: 963 G 965
G
Sbjct: 6 G 4
>gb|DV463809.1|DV463809 MTUNUL1.P2.F09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 740
Score = 201 bits (433), Expect = 8e-051
Identities = 88/182 (48%), Positives = 114/182 (62%)
Frame = +3 / -3
Query: 441 LNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPP 620
LNSNRF G SNN F G FP V L +P+L YLDLRFN F GPIP
Sbjct: 738 LNSNRFSGTLPDTFKDLISLQELDLSNNYFSGPFPTVTLYIPNLMYLDLRFNSFSGPIPE 559
Query: 621 PLFDRPLDAILLNSNRLRGPIPANLGNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVL 800
+F++ LDAI LN+N+ IP NLG+SPASV+ LA+N+L G IP S G M++ + EI+
Sbjct: 558 DVFNKRLDAIFLNNNQFDSQIPQNLGSSPASVINLANNKLSGNIPASFGLMSSKVKEILF 379
Query: 801 IDDDLTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSA 980
+++ LTGC+P VGL T++ V DVS N L G LP + + ++ LN+A N L G VP
Sbjct: 378 LNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPEL 199
Query: 981 VC 986
VC
Sbjct: 198 VC 193
>gb|CV227579.1|CV227579 WS0167.B21_J13 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_J13
3', mRNA sequence
Length = 871
Score = 193 bits (415), Expect = 2e-048
Identities = 81/157 (51%), Positives = 107/157 (68%)
Frame = +3 / -3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F G FP V L +P+L YLDLRFN F GPIP +F++ LDAI LN+N+ IP NL
Sbjct: 857 SNNHFSGPFPTVTLYIPNLMYLDLRFNSFSGPIPEDVFNKKLDAIFLNNNQFDSQIPQNL 678
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G+SPASV+ LA+N+L G IP S G M++ + EI+ +++ LTGC+P VGL T++ V DVS
Sbjct: 677 GSSPASVINLANNKLSGNIPASFGLMSSKVKEILFLNNQLTGCIPQGVGLFTEMQVLDVS 498
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L G LP + + ++ LN+A N L G VP VC
Sbjct: 497 FNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPELVC 387
>gb|DT506655.1|DT506655 WS02416.BR_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_C14 5', mRNA sequence
Length = 837
Score = 193 bits (415), Expect = 2e-048
Identities = 81/157 (51%), Positives = 107/157 (68%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F G FP V L +P+L YLDLRFN F GPIP +F++ LDAI LN+N+ IP NL
Sbjct: 40 SNNHFSGPFPTVTLYIPNLMYLDLRFNSFSGPIPEDVFNKKLDAIFLNNNQFDSQIPQNL 219
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G+SPASV+ LA+N+L G IP S G M++ + EI+ +++ LTGC+P VGL T++ V DVS
Sbjct: 220 GSSPASVINLANNKLSGNIPASFGLMSSKVKEILFLNNQLTGCIPQGVGLFTEMQVLDVS 399
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L G LP + + ++ LN+A N L G VP VC
Sbjct: 400 FNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPELVC 510
>gb|DT511324.1|DT511324 WS02416.B21_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_C14 3', mRNA sequence
Length = 886
Score = 193 bits (415), Expect = 2e-048
Identities = 81/157 (51%), Positives = 107/157 (68%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F G FP V L +P+L YLDLRFN F GPIP +F++ LDAI LN+N+ IP NL
Sbjct: 847 SNNHFSGPFPTVTLYIPNLMYLDLRFNSFSGPIPEDVFNKKLDAIFLNNNQFDSQIPQNL 668
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G+SPASV+ LA+N+L G IP S G M++ + EI+ +++ LTGC+P VGL T++ V DVS
Sbjct: 667 GSSPASVINLANNKLSGNIPASFGLMSSKVKEILFLNNQLTGCIPQGVGLFTEMQVLDVS 488
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L G LP + + ++ LN+A N L G VP VC
Sbjct: 487 FNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPELVC 377
>gb|DT519122.1|DT519122 WS02440.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_F15 3', mRNA sequence
Length = 886
Score = 193 bits (415), Expect = 2e-048
Identities = 81/157 (51%), Positives = 107/157 (68%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F G FP V L +P+L YLDLRFN F GPIP +F++ LDAI LN+N+ IP NL
Sbjct: 847 SNNHFSGPFPTVTLYIPNLMYLDLRFNSFSGPIPEDVFNKKLDAIFLNNNQFDSQIPQNL 668
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G+SPASV+ LA+N+L G IP S G M++ + EI+ +++ LTGC+P VGL T++ V DVS
Sbjct: 667 GSSPASVINLANNKLSGNIPASFGLMSSKVKEILFLNNQLTGCIPQGVGLFTEMQVLDVS 488
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L G LP + + ++ LN+A N L G VP VC
Sbjct: 487 FNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPELVC 377
>gb|BU898213.1|BU898213 X076F02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 689
Score = 180 bits (387), Expect = 2e-044
Identities = 75/157 (47%), Positives = 103/157 (65%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F G FP +L +P L +LD+RFN F G +PP LF LD I LN+N +P NL
Sbjct: 47 SNNNFHGDFPMEILGIPGLSFLDIRFNFFTGTVPPQLFTEGLDVIFLNNNNFSQKLPENL 226
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVS 875
G++ L LA+N+ G IP SI + +ATL E++L+++ LTGC+P ++G L +L +FD
Sbjct: 227 GSTTVRYLTLANNKFIGPIPRSIIKASATLREVLLLNNLLTGCLPYELGFLRELVLFDAG 406
Query: 876 GNHLQGPLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
N L GPLP ++G +A L+Q N+ GNLL G VP VC
Sbjct: 407 NNLLTGPLPSSLGCLAKLEQFNLTGNLLYGQVPEVVC 517
>gb|CV245618.1|CV245618 WS0257.B21_O19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_O19 3', mRNA sequence
Length = 878
Score = 180 bits (387), Expect = 2e-044
Identities = 76/151 (50%), Positives = 102/151 (67%)
Frame = +3 / -3
Query: 534 GAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANLGNSPAS 713
G FP V L +P+L YLDLR N F GPIP +F++ LDAI LN+N+ IP NLG+SPAS
Sbjct: 873 GPFPTVTLYIPNLMYLDLRSNSFSGPIPEDVFNKKLDAIFLNNNQFDSQIPQNLGSSPAS 694
Query: 714 VLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVFDVSGNHLQG 893
V+ LA+N+L G IP S G M++ + EI+ +++ LTGC+P VGL T++ V DVS N L G
Sbjct: 693 VINLANNKLSGNIPASFGLMSSKVKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMG 514
Query: 894 PLPPAVGGMAVLQQLNVAGNLLRGPVPSAVC 986
LP + + ++ LN+A N L G VP VC
Sbjct: 513 HLPDTISCLNQIEVLNLAHNKLSGQVPELVC 421
>gb|DN489922.1|DN489922 T093D11.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T093D11 3', mRNA sequence
Length = 734
Score = 127 bits (272), Expect(4) = 4e-044
Identities = 51/83 (61%), Positives = 61/83 (73%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LP L+YLDLRFN+FEG +P LFD+ LDAI +N NR +P N
Sbjct: 284 SNNRFAGRFPYVVLDLPKLKYLDLRFNEFEGDLPKELFDKDLDAIFINHNRFALELPDNF 105
Query: 696 GNSPASVLVLAHNRLGGCIPPSI 764
GNSP SV+VLA+N+ GC P S+
Sbjct: 104 GNSPVSVIVLANNKFHGCFPTSL 36
Score = 50.1 bits (103), Expect(4) = 4e-044
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +1 / -1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
+ AI SDP N TSNW G +VC Y G++CA
Sbjct: 563 KLAIISDPLNLTSNWDGSDVCNYTGVFCA 477
Score = 33.6 bits (67), Expect(4) = 4e-044
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCG 464
D+AL H+NSNRFCG
Sbjct: 377 DIALFHVNSNRFCG 336
Score = 24.0 bits (46), Expect(4) = 4e-044
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NH D+AGH+ +L L
Sbjct: 428 NHGDMAGHLVEELGL 384
>gb|AI167086.1|AI167086 xylem.est.854 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 604
Score = 130 bits (279), Expect(3) = 3e-039
Identities = 54/117 (46%), Positives = 78/117 (66%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN F G+FP VLA+P+L +LD+RFN F G +PP +F + LD + LN+N +P NL
Sbjct: 175 SNNNFFGSFPMEVLAIPALSFLDIRFNFFTGTVPPQVFTQRLDVLFLNNNNFMQGLPENL 354
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVLIDDDLTGCVPPQVGLLTKLTVF 866
G++P L LA+N+ G IP SI + +ATL E++ + LTGC+P ++G L K + F
Sbjct: 355 GSTPVLYLTLAYNKFIGPIPRSIIKASATLTEVLFSHNLLTGCLPYELGFLRKTSPF 525
Score = 39.1 bits (79), Expect(3) = 3e-039
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3 / +2
Query: 852 KLTVFDVSGNHLQGPLPPAVGGMAVLQQLNV 944
KL +FD S N L GPLP ++G +A L+Q N+
Sbjct: 512 KLVLFDASYNFLTGPLPCSLGCLAKLEQFNL 604
Score = 31.3 bits (62), Expect(3) = 3e-039
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 417 VPDLALLHLNSNRFCG 464
+PDLAL H NSN+F G
Sbjct: 76 LPDLALFHANSNKFSG 123
>gb|BU836996.1|BU836996 T093D11 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 726
Score = 105 bits (224), Expect(4) = 1e-037
Identities = 43/67 (64%), Positives = 49/67 (73%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LP L+YLDLRFN+FEG +P LFD+ LDAI +N NR +P N
Sbjct: 525 SNNRFAGRFPYVVLDLPKLKYLDLRFNEFEGDLPKELFDKDLDAIFINHNRFALELPDNF 704
Query: 696 GNSPASV 716
GNSP SV
Sbjct: 705 GNSPVSV 725
Score = 50.1 bits (103), Expect(4) = 1e-037
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
+ AI SDP N TSNW G +VC Y G++CA
Sbjct: 246 KLAIISDPLNLTSNWDGSDVCNYTGVFCA 332
Score = 33.6 bits (67), Expect(4) = 1e-037
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCG 464
D+AL H+NSNRFCG
Sbjct: 432 DIALFHVNSNRFCG 473
Score = 24.0 bits (46), Expect(4) = 1e-037
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 369 NHADIAGHIPADLPL 413
NH D+AGH+ +L L
Sbjct: 381 NHGDMAGHLVEELGL 425
>gb|DN499850.1|DN499850 T093D11.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T093D11 5', mRNA sequence
Length = 717
Score = 101 bits (216), Expect(4) = 1e-036
Identities = 41/64 (64%), Positives = 47/64 (73%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNNRF G FP VVL LP L+YLDLRFN+FEG +P LFD+ LDAI +N NR +P N
Sbjct: 524 SNNRFAGRFPYVVLDLPKLKYLDLRFNEFEGDLPKELFDKDLDAIFINHNRFALELPDNF 703
Query: 696 GNSP 707
GNSP
Sbjct: 704 GNSP 715
Score = 50.1 bits (103), Expect(4) = 1e-036
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +1 / +2
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCA 324
+ AI SDP N TSNW G +VC Y G++CA
Sbjct: 245 KLAIISDPLNLTSNWDGSDVCNYTGVFCA 331
Score = 33.6 bits (67), Expect(4) = 1e-036
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 423 DLALLHLNSNRFCG 464
D+AL H+NSNRFCG
Sbjct: 431 DIALFHVNSNRFCG 472
Score = 24.0 bits (46), Expect(4) = 1e-036
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 369 NHADIAGHIPADLPL 413
NH D+AGH+ +L L
Sbjct: 380 NHGDMAGHLVEELGL 424
>gb|DT509890.1|DT509890 WS02425.BR_A09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_A09 5', mRNA sequence
Length = 630
Score = 69.8 bits (146), Expect(4) = 5e-032
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +1 / +1
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI SDP NFTSNW GPNVC Y G+YCAP P D
Sbjct: 223 AITSDPKNFTSNWCGPNVCNYTGVYCAPAPDD 318
Score = 68.4 bits (143), Expect(4) = 5e-032
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDR 635
SNN+F G FP+VVL+LPSL++LD+R+N+F G IP LFD+
Sbjct: 496 SNNQFSGKFPSVVLSLPSLKFLDIRYNEFRGKIPSKLFDK 615
Score = 29.9 bits (59), Expect(4) = 5e-032
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 403 DLALFHINSNRFFG 444
Score = 25.8 bits (50), Expect(4) = 5e-032
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 369 NHADIAGHIPADLPL 413
NHA IAG +P DL L
Sbjct: 352 NHAKIAGSLPEDLGL 396
>gb|DT514511.1|DT514511 WS02425.B21_A09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_A09 3', mRNA sequence
Length = 629
Score = 69.8 bits (146), Expect(4) = 2e-030
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +1 / -1
Query: 244 AIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
AI SDP NFTSNW GPNVC Y G+YCAP P D
Sbjct: 407 AITSDPKNFTSNWCGPNVCNYTGVYCAPAPDD 312
Score = 62.9 bits (131), Expect(4) = 2e-030
Identities = 23/40 (57%), Positives = 33/40 (82%)
Frame = +3 / -1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDR 635
SNN+F G FP+VVL+LPSL++LD+R+N+F G IP L+ +
Sbjct: 134 SNNQFSGKFPSVVLSLPSLKFLDIRYNEFRGKIPSKLWTK 15
Score = 29.9 bits (59), Expect(4) = 2e-030
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 423 DLALLHLNSNRFCG 464
DLAL H+NSNRF G
Sbjct: 227 DLALFHINSNRFFG 186
Score = 25.8 bits (50), Expect(4) = 2e-030
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3 / -1
Query: 369 NHADIAGHIPADLPL 413
NHA IAG +P DL L
Sbjct: 278 NHAKIAGSLPEDLGL 234
>gb|DV464808.1|DV464808 MTUNUL1.P31.A09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 867
Score = 100 bits (213), Expect(3) = 5e-028
Identities = 40/95 (42%), Positives = 58/95 (61%)
Frame = +3 / +3
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN++ G FP VL +L +LD+RFN F GP+P +F+ LD + +N+N+ +P NL
Sbjct: 294 SNNKYSGGFPMSVLQATNLTFLDIRFNSFSGPVPAEVFNLDLDVLFINNNKFSQQLPGNL 473
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVL 800
G++P L LA+N+ G IP SIG L + L
Sbjct: 474 GSTPVLYLTLANNKFSGPIPRSIGNARNLLEVLFL 578
Score = 34.5 bits (69), Expect(3) = 5e-028
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1 / +3
Query: 262 SNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGID 366
+ T W G +VC Y G CA P A+A D
Sbjct: 27 TGITKKWVGNDVCNYPGFKCATVPDQKVTALAAAD 131
Score = 32.7 bits (65), Expect(3) = 5e-028
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3 / +3
Query: 813 LTGCVPPQVGLLTKLTVFDVSGNHLQGPLPPAVGGMAVLQQLNVAGN 953
LTG +P L K+ + +++ N GP+P V + L L+++ N
Sbjct: 660 LTGPIPHSFACLXKMEILNLAVNKFYGPVPEMVCDLPRLANLSLSYN 800
>gb|CN520159.1|CN520159 GQ0106.B3_K12 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_K12 5', mRNA sequence
Length = 782
Score = 95.9 bits (203), Expect(2) = 1e-024
Identities = 39/95 (41%), Positives = 56/95 (58%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN++ G FP VL +L +LD+RFN F G +P +F LD + +N+N+ +P NL
Sbjct: 328 SNNKYSGGFPMSVLQATNLTFLDIRFNSFSGSVPAEVFTLDLDVLFINNNKFSQQLPGNL 507
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVL 800
G++P L LA+N+ G IP SIG L + L
Sbjct: 508 GSTPVLYLTLANNKFSGPIPRSIGNARNLLEVLFL 612
Score = 40.9 bits (83), Expect(2) = 1e-024
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1 / +1
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGID 366
I +DP T W G +VC Y G CA P A+A D
Sbjct: 46 ITTDPMGITKKWVGNDVCNYPGFKCATVPDQKVTALAAAD 165
>gb|BU888292.1|BU888292 P006B07 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 694
Score = 73.9 bits (155), Expect(3) = 3e-024
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3 / +1
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIP 686
SNN F G+FP VL +P+L +LD+RFN F G +PP +F + LDA+ LN+N +P
Sbjct: 520 SNNNFFGSFPMEVLGIPALSFLDIRFNFFTGTVPPRVFTQRLDALFLNNNNFMQGLP 690
Score = 44.6 bits (91), Expect(3) = 3e-024
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1 / +1
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSD 339
+ I SDP N T W G ++C Y G YC P +
Sbjct: 238 KNTITSDPLNITQTWGGADICNYKGFYCTSPPDN 339
Score = 31.3 bits (62), Expect(3) = 3e-024
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 417 VPDLALLHLNSNRFCG 464
+PDLAL H NSN+F G
Sbjct: 421 LPDLALFHANSNKFSG 468
>gb|DT481202.1|DT481202 WS02531.BR_D05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02531_D05 5', mRNA sequence
Length = 739
Score = 95.9 bits (203), Expect(2) = 6e-024
Identities = 39/95 (41%), Positives = 56/95 (58%)
Frame = +3 / +2
Query: 516 SNNRFVGAFPAVVLALPSLRYLDLRFNDFEGPIPPPLFDRPLDAILLNSNRLRGPIPANL 695
SNN++ G FP VL +L +LD+RFN F G +P +F LD + +N+N+ +P NL
Sbjct: 380 SNNKYSGGFPMSVLQATNLTFLDIRFNSFSGSVPAEVFTLDLDVLFINNNKFSQQLPGNL 559
Query: 696 GNSPASVLVLAHNRLGGCIPPSIGRMAATLNEIVL 800
G++P L LA+N+ G IP SIG L + L
Sbjct: 560 GSTPVLYLTLANNKFSGPIPRSIGNARNLLEVLFL 664
Score = 38.2 bits (77), Expect(2) = 6e-024
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1 / +2
Query: 247 IFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDGALAVAGID 366
I +DP W G +VC Y G CA P A+A D
Sbjct: 98 ITTDPMGIRKKWVGNDVCNYPGFKCATVPDQKVTALAAAD 217
>gb|DT496711.1|DT496711 WS01124.BR_D22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_D22 5', mRNA sequence
Length = 866
Score = 82.2 bits (173), Expect(2) = 1e-022
Identities = 35/65 (53%), Positives = 38/65 (58%)
Frame = +3 / +3
Query: 423 DLALLHLNSNRFCGVXXXXXXXXXXXXXXXXSNNRFVGAFPAVVLALPSLRYLDLRFNDF 602
DL+LLHLNSNRF G SNN F G FP V L +P+L YLDLRFN F
Sbjct: 642 DLSLLHLNSNRFSGTLPDTFKDLISLQELDLSNNHFSGPFPTVTLYIPNLMYLDLRFNSF 821
Query: 603 EGPIP 617
GPIP
Sbjct: 822 SGPIP 836
Score = 45.1 bits (92), Expect(2) = 1e-022
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1 / +3
Query: 238 RTAIFSDPSNFTSNWAGPNVCAYNGIYCAPRPSDG 342
++AI DP W G +VCAY G++CA DG
Sbjct: 456 KSAITDDPLKVLDTWVGTDVCAYKGVFCADPQDDG 560
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 242,847,909
Number of Sequences: 369679
Number of extensions: 2433539
Number of successful extensions: 19045
Number of sequences better than 1.0e-020: 27
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 14896859409
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)