TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT517230.1|DT517230 WS02433.B21_L04 PTxD-ICC-N-A-14 Popu... 227 e-100
gb|DT519106.1|DT519106 WS02440.B21_E14 PTxD-ICC-N-A-14 Popu... 227 4e-096
gb|DT503947.1|DT503947 WS0138.BR_G11 PTxD-IL-FL-A-4 Populus... 192 4e-085
gb|DV466257.1|DV466257 MTUNUL1.P49.C09 NUL Populus fremonti... 170 3e-080
gb|CN519326.1|CN519326 GQ0101.B3_A18 GQ010 Populus trichoca... 212 1e-060
gb|CV255630.1|CV255630 WS02414.B21_I24 PTxD-ICC-N-A-14 Popu... 227 1e-058
gb|BU835245.1|BU835245 T071E04 Populus apical shoot cDNA li... 204 8e-052
gb|CV280962.1|CV280962 WS0138.B21_G11 PTxD-IL-FL-A-4 Populu... 177 1e-043
gb|DN499603.1|DN499603 T071E04.5pR Populus shoot meristem c... 131 2e-036
gb|AJ780860.1|AJ780860 AJ780860 Populus euphratica leaf 3-6... 147 1e-034
gb|AJ780779.1|AJ780779 AJ780779 Populus euphratica leaf 3-6... 146 2e-034
gb|CA823121.1|CA823121 R21B07 two-month-old roots from clon... 112 4e-028
>gb|DT517230.1|DT517230 WS02433.B21_L04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_L04 3', mRNA sequence
Length = 965
Score = 227 bits (490), Expect(2) = e-100
Identities = 87/154 (56%), Positives = 112/154 (72%)
Frame = -2 / -3
Query: 650 NLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDF 471
NLTE+L+FL+HF+GD+HQPLHVGF D+GGNTI VHWYRRK LHH+WD SII+TA +
Sbjct: 633 NLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDVHWYRRKQVLHHIWDASIIETAEERL 454
Query: 470 YNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQD 291
YN ++D +V+A++ N+T+ W+D I WE C C + YA E I +C++AYK +
Sbjct: 453 YNSNVDDLVDAVQKNITNDWADLIPGWETCSLNKTACPDIYASEGIKAACDWAYKGAAEG 274
Query: 290 ITLGDDYFFSRYPIVEKRLAQAGIRLALVLNRIF 189
L DDYF SR PIV+ RLAQ G+RLA LNRIF
Sbjct: 273 TVLEDDYFLSRLPIVKLRLAQGGVRLAATLNRIF 172
Score = 160 bits (343), Expect(2) = e-100
Identities = 58/99 (58%), Positives = 76/99 (76%)
Frame = -2 / -3
Query: 950 HIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYANTPQV 771
H+ VC+IA+ LSE AA AV+ LLPE AG +L +VC WAD+VR+ YHW++PLH+ NTP V
Sbjct: 942 HLTVCRIAQSRLSEAAADAVKQLLPEYAGSDLGSVCSWADEVRFRYHWSAPLHFINTPDV 763
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
CN+KY+RDC + G++G CV GAINNYT QL +Y +S
Sbjct: 762 CNYKYTRDCEDDTGEKGRCVAGAINNYTTQLLTYNSGSS 646
Score = 80.8 bits (170), Expect(3) = 4e-030
Identities = 47/97 (48%), Positives = 50/97 (51%)
Frame = +1 / +2
Query: 361 QVACLFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRY 540
Q L LQ S + S V F AST S L AVSI+L S R FL Y
Sbjct: 344 QAVLLRLQVSHPGIKSAQSFVIFF*TASTKSSTFELYNLSSAVSIILASQIW*RTCFLLY 523
Query: 541 QWTVMVLPPSSSSKPTCSGWWTSPTKCARNIRLSVRL 651
QWT MVLPP S +KPTC G W SP K R R SVRL
Sbjct: 524 QWTSMVLPPLSEAKPTCRG*WMSPIK*ERKRRASVRL 634
Score = 66.6 bits (139), Expect(3) = 4e-030
Identities = 43/96 (44%), Positives = 49/96 (51%)
Frame = +1 / +2
Query: 679 SWSV*LLIAPTTHIPCWPRELWQSREYLKLQTWGVLA*WSGLAQW*CQRTWSAHGHTVXX 858
SW V*LLIAP TH+P P QS YL LQT GVL G Q * T SAH HT+
Sbjct: 671 SWVV*LLIAPATHLPFSPVSSSQSLVYL*LQTSGVLMK*RGADQ**RNLTSSAHEHTLPK 850
Query: 859 XXXXXXXXXXCTAAAAFSDRYFSAILQTMMWPSFPH 966
TA+AA S + AIL T+ FP+
Sbjct: 851 SLPAYSGSSCLTASAAASLKRD*AILHTVRCHQFPN 958
Score = 22.6 bits (43), Expect(3) = 4e-030
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1 / +2
Query: 193 IRLSTNANLIPACANLFSTIGYLLKK*SSPRVMSCSTSL 309
+RLS A P AN TIG +K*SS + + L
Sbjct: 176 MRLSVAARRTPP*ANRNFTIGKRDRK*SSSNTVPSAAPL 292
>gb|DT519106.1|DT519106 WS02440.B21_E14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_E14 3', mRNA sequence
Length = 908
Score = 227 bits (490), Expect(2) = 4e-096
Identities = 87/154 (56%), Positives = 112/154 (72%)
Frame = -2 / -1
Query: 650 NLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDF 471
NLTE+L+FL+HF+GD+HQPLHVGF D+GGNTI VHWYRRK LHH+WD SII+TA +
Sbjct: 632 NLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDVHWYRRKQVLHHIWDASIIETAEERL 453
Query: 470 YNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQD 291
YN ++D +V+A++ N+T+ W+D I WE C C + YA E I +C++AYK +
Sbjct: 452 YNSNVDDLVDAVQKNITNDWADLIPGWETCSLNKTACPDIYASEGIKAACDWAYKGAAEG 273
Query: 290 ITLGDDYFFSRYPIVEKRLAQAGIRLALVLNRIF 189
L DDYF SR PIV+ RLAQ G+RLA LNRIF
Sbjct: 272 TVLEDDYFLSRLPIVKLRLAQGGVRLAATLNRIF 171
Score = 145 bits (311), Expect(2) = 4e-096
Identities = 53/88 (60%), Positives = 68/88 (77%)
Frame = -2 / -1
Query: 917 LSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYANTPQVCNFKYSRDCHN 738
LSE AA AV+ LLPE AG +L +VC WAD+VR+ YHW++PLH+ NTP VCN+KY+RDC +
Sbjct: 908 LSEAAADAVKQLLPEYAGSDLGSVCSWADEVRFRYHWSAPLHFINTPDVCNYKYTRDCED 729
Query: 737 SRGQQGMCVVGAINNYTDQLYSYGQKTS 654
G++G CV GAINNYT QL +Y +S
Sbjct: 728 DTGEKGRCVAGAINNYTTQLLTYNSGSS 645
Score = 80.8 bits (170), Expect(3) = 6e-028
Identities = 47/97 (48%), Positives = 50/97 (51%)
Frame = +1 / +1
Query: 361 QVACLFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRY 540
Q L LQ S + S V F AST S L AVSI+L S R FL Y
Sbjct: 343 QAVLLRLQVSHPGIKSAQSFVIFF*TASTKSSTFELYNLSSAVSIILASQIW*RTCFLLY 522
Query: 541 QWTVMVLPPSSSSKPTCSGWWTSPTKCARNIRLSVRL 651
QWT MVLPP S +KPTC G W SP K R R SVRL
Sbjct: 523 QWTSMVLPPLSEAKPTCRG*WMSPIK*ERKRRASVRL 633
Score = 59.3 bits (123), Expect(3) = 6e-028
Identities = 37/78 (47%), Positives = 40/78 (51%)
Frame = +1 / +1
Query: 679 SWSV*LLIAPTTHIPCWPRELWQSREYLKLQTWGVLA*WSGLAQW*CQRTWSAHGHTVXX 858
SW V*LLIAP TH+P P QS YL LQT GVL G Q * T SAH HT+
Sbjct: 670 SWVV*LLIAPATHLPFSPVSSSQSLVYL*LQTSGVLMK*RGADQ**RNLTSSAHEHTLPK 849
Query: 859 XXXXXXXXXXCTAAAAFS 912
TA+AA S
Sbjct: 850 SLPAYSGSSCLTASAAAS 903
Score = 22.6 bits (43), Expect(3) = 6e-028
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1 / +1
Query: 193 IRLSTNANLIPACANLFSTIGYLLKK*SSPRVMSCSTSL 309
+RLS A P AN TIG +K*SS + + L
Sbjct: 175 MRLSVAARRTPP*ANRNFTIGKRDRK*SSSNTVPSAAPL 291
>gb|DT503947.1|DT503947 WS0138.BR_G11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_G11 5', mRNA sequence
Length = 837
Score = 192 bits (413), Expect(3) = 4e-085
Identities = 69/118 (58%), Positives = 91/118 (77%)
Frame = -2 / +1
Query: 662 KTSYNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTA 483
+++YNLTE+LMFL+HF+GDVHQPLHVGF D GGNTI VHWYRRK+NLHHVWD II++A
Sbjct: 484 ESNYNLTEALMFLSHFIGDVHQPLHVGFLGDLGGNTIQVHWYRRKSNLHHVWDNMIIESA 663
Query: 482 IKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAY 309
+K FY+ + TM+ A++ N+T+ WS+ WE+C + H C N YA ESI +C +AY
Sbjct: 664 LKTFYSSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCPNPYASESISLACKFAY 837
Score = 112 bits (239), Expect(3) = 4e-085
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = -2 / +1
Query: 965 WGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYA 786
WGKEGH CKIAE YL+ +A AAV+ LLPESA G+L+ VC W D++R+HYHW+S LHY
Sbjct: 166 WGKEGHYATCKIAEGYLTAEALAAVKELLPESAEGDLANVCSWPDEIRFHYHWSSALHYV 345
Query: 785 NTP 777
+TP
Sbjct: 346 DTP 354
Score = 100 bits (213), Expect(3) = 6e-029
Identities = 53/106 (50%), Positives = 59/106 (55%)
Frame = +1 / -2
Query: 334 MLSIA*SFAQVACLFLQFSQWTMSSDHPSVRFILRASTMVSMLLL*KSLIAVSIMLTSHT 513
MLS A* F Q L Q S D SV A MV+ L* A SI++ SHT
Sbjct: 812 MLSEA*GFGQTVWLCAQCSHSGC*LDQFSVILF*MARIMVARSEL*NVFKADSIIMLSHT 633
Query: 514 *WRFAFLRYQWTVMVLPPSSSSKPTCSGWWTSPTKCARNIRLSVRL 651
RF FLRYQWT +V PP S KPTC GW TSP KC +NI SV+L
Sbjct: 632 WCRFDFLRYQWTCIVFPPKSPRKPTCRGWCTSPIKCDKNISASVKL 495
Score = 50.6 bits (104), Expect(3) = 4e-085
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -2 / +1
Query: 770 CNFKYSRDCHNSRGQQGMCVVGAINNYTDQL 678
CN++Y RDC +S G++ CV GAI NYT+QL
Sbjct: 364 CNYEYFRDCLDSSGRKDRCVTGAIYNYTNQL 456
Score = 32.7 bits (65), Expect(3) = 6e-029
Identities = 24/62 (38%), Positives = 25/62 (40%)
Frame = +1 / -2
Query: 778 GVLA*WSGLAQW*CQRTWSAHGHTVXXXXXXXXXXXXCTAAAAFSDRYFSAILQTMMWPS 957
GV * L Q * R S T TAA A + RY SAILQ PS
Sbjct: 353 GVST*CKALLQ**WNRISSGQEQTFARSPSADSGSNSFTAARASAVRYPSAILQVA**PS 174
Query: 958 FP 963
FP
Sbjct: 173 FP 168
Score = 32.7 bits (65), Expect(3) = 6e-029
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1 / -2
Query: 679 SWSV*LLIAPTTHIPCWPRELWQSREY 759
SW V*L IAP TH+ P E QS +Y
Sbjct: 455 SWFV*L*IAPVTHLSLRPEESRQSLKY 375
>gb|DV466257.1|DV466257 MTUNUL1.P49.C09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 817
Score = 170 bits (365), Expect(2) = 3e-080
Identities = 61/104 (58%), Positives = 80/104 (76%)
Frame = -2 / +2
Query: 965 WGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYA 786
WG +GH+ VC+IA+ LSE AA AV+ LLPE AG +L +VC WAD+VR+ YHW++PLH+
Sbjct: 245 WGIDGHLTVCRIAQSRLSEAAADAVKQLLPEYAGNDLGSVCSWADEVRFRYHWSAPLHFI 424
Query: 785 NTPQVCNFKYSRDCHNSRGQQGMCVVGAINNYTDQLYSYGQKTS 654
NTP VCN+KY+RDC + G++G CV GAINNYT QL +Y +S
Sbjct: 425 NTPDVCNYKYTRDCEDDTGEKGRCVAGAINNYTTQLLAYNSGSS 556
Score = 149 bits (320), Expect(2) = 3e-080
Identities = 53/90 (58%), Positives = 71/90 (78%)
Frame = -2 / +2
Query: 674 SYGQKTSYNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSI 495
S + YNLTE+L+FL+HF+GD+HQPLHVGF D+GGNTI VHWYRRK LHH+WD SI
Sbjct: 545 SGSSQADYNLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDVHWYRRKQVLHHIWDASI 724
Query: 494 IDTAIKDFYNKSMDTMVEALKMNLTDGWSD 405
I+TA + YN +D +V+A++ N+T+ W+D
Sbjct: 725 IETAEERLYNSXVDDLVDAVQKNITNDWAD 814
Score = 75.3 bits (158), Expect(2) = 8e-029
Identities = 41/77 (53%), Positives = 43/77 (55%)
Frame = +1 / -2
Query: 421 VRFILRASTMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWTVMVLPPSSSSKPTCSGW 600
V F AST S L AVSI+L S R FL YQWT MVLPP S +KPTC G
Sbjct: 798 VIFF*TASTKSSTXELYNLSSAVSIILASQIW*RTCFLLYQWTSMVLPPLSEAKPTCRG* 619
Query: 601 WTSPTKCARNIRLSVRL 651
W SP K R R SVRL
Sbjct: 618 WMSPIK*ERKRRASVRL 568
Score = 72.5 bits (152), Expect(2) = 8e-029
Identities = 45/95 (47%), Positives = 50/95 (52%)
Frame = +1 / -2
Query: 679 SWSV*LLIAPTTHIPCWPRELWQSREYLKLQTWGVLA*WSGLAQW*CQRTWSAHGHTVXX 858
SW V*LLIAP TH+P P QS YL LQT GVL G Q * RT SAH HT+
Sbjct: 531 SWVV*LLIAPATHLPFSPVSSSQSLVYL*LQTSGVLMK*RGADQ**RNRTSSAHEHTLPK 352
Query: 859 XXXXXXXXXXCTAAAAFSDRYFSAILQTMMWPSFP 963
TA+AA S + AIL T+ PS P
Sbjct: 351 SFPAYSGSSCLTASAAASLKRD*AILHTVRCPSIP 247
>gb|CN519326.1|CN519326 GQ0101.B3_A18 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_A18 5', mRNA sequence
Length = 541
Score = 212 bits (457), Expect(2) = 1e-060
Identities = 78/135 (57%), Positives = 101/135 (74%)
Frame = -2 / +1
Query: 662 KTSYNLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTA 483
+++YNLTE+LMFL+HF+GDVHQPLHVGF D GGNTI VHWYRRK+NLHHVWD II++A
Sbjct: 112 ESNYNLTEALMFLSHFIGDVHQPLHVGFLGDLGGNTIQVHWYRRKSNLHHVWDNMIIESA 291
Query: 482 IKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKD 303
+K FY+ + TM+ A++ N+T+ WS+ WE+C + H C N YA ESI +C +AYK+
Sbjct: 292 LKTFYSSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCPNPYASESISLACKFAYKN 471
Query: 302 VEQDITLGDDYFFSR 258
TL DDYF SR
Sbjct: 472 ASPGSTLXDDYFLSR 516
Score = 108 bits (230), Expect(2) = 8e-027
Identities = 62/129 (48%), Positives = 70/129 (54%)
Frame = +1 / -3
Query: 265 KK*SSPRVMSCSTSL*A*LQE*WMLSIA*SFAQVACLFLQFSQWTMSSDHPSVRFILRAS 444
+K*SS RV+ L A L MLS A* F Q L Q S D SV A
Sbjct: 509 RK*SSSRVLPGEAFLYANLHAKLMLSEA*GFGQTVWLCAQCSHSGC*LDQFSVILF*MAR 330
Query: 445 TMVSMLLL*KSLIAVSIMLTSHT*WRFAFLRYQWTVMVLPPSSSSKPTCSGWWTSPTKCA 624
MV+ L* A SI++ SHT RF FLRYQWT +V PP S KPTC GW TSP KC
Sbjct: 329 IMVARSEL*NVFKADSIIMLSHTWCRFDFLRYQWTCIVFPPKSPRKPTCRGWCTSPIKCD 150
Query: 625 RNIRLSVRL 651
+NI SV+L
Sbjct: 149 KNISASVKL 123
Score = 42.3 bits (86), Expect(2) = 1e-060
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -2 / +1
Query: 761 KYSRDCHNSRGQQGMCVVGAINNYTDQL 678
+Y RDC +S G++ CV GAI NYT+QL
Sbjct: 1 EYFRDCLDSSGRKDRCVTGAIYNYTNQL 84
Score = 32.7 bits (65), Expect(2) = 8e-027
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1 / -3
Query: 679 SWSV*LLIAPTTHIPCWPRELWQSREY 759
SW V*L IAP TH+ P E QS +Y
Sbjct: 83 SWFV*L*IAPVTHLSLRPEESRQSLKY 3
>gb|CV255630.1|CV255630 WS02414.B21_I24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_I24 3', mRNA sequence
Length = 733
Score = 227 bits (490), Expect = 1e-058
Identities = 87/154 (56%), Positives = 112/154 (72%)
Frame = -2 / -2
Query: 650 NLTESLMFLAHFVGDVHQPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDF 471
NLTE+L+FL+HF+GD+HQPLHVGF D+GGNTI VHWYRRK LHH+WD SII+TA +
Sbjct: 675 NLTEALLFLSHFMGDIHQPLHVGFASDKGGNTIDVHWYRRKQVLHHIWDASIIETAEERL 496
Query: 470 YNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQD 291
YN ++D +V+A++ N+T+ W+D I WE C C + YA E I +C++AYK +
Sbjct: 495 YNSNVDDLVDAVQKNITNDWADLIPGWETCSLNKTACPDIYASEGIKAACDWAYKGAAEG 316
Query: 290 ITLGDDYFFSRYPIVEKRLAQAGIRLALVLNRIF 189
L DDYF SR PIV+ RLAQ G+RLA LNRIF
Sbjct: 315 TVLEDDYFLSRLPIVKLRLAQGGVRLAATLNRIF 214
>gb|BU835245.1|BU835245 T071E04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 204 bits (440), Expect = 8e-052
Identities = 79/137 (57%), Positives = 98/137 (71%)
Frame = -2 / +3
Query: 599 QPLHVGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLT 420
QPLHVGF D GGNTI V WYRRK+NLHHVWD II++A+K FY+ + TM+ A++ N+T
Sbjct: 3 QPLHVGFLGDLGGNTIQVRWYRRKSNLHHVWDTMIIESALKTFYSSDLATMIRAIQNNVT 182
Query: 419 DGWSDDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEK 240
+ WS+ WE+C + H C + YA ESI +C +AYK+ TL DDYF SR P+VEK
Sbjct: 183 ENWSNQQPLWEHCAHNHTVCPDPYASESISLACKFAYKNATPGSTLEDDYFLSRLPVVEK 362
Query: 239 RLAQAGIRLALVLNRIF 189
RLAQ GIRLA LNRIF
Sbjct: 363 RLAQGGIRLAATLNRIF 413
>gb|CV280962.1|CV280962 WS0138.B21_G11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_G11 3', mRNA sequence
Length = 797
Score = 177 bits (381), Expect = 1e-043
Identities = 72/133 (54%), Positives = 89/133 (66%)
Frame = -2 / -1
Query: 587 VGFEDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWS 408
VGF D GGNTI V WYRRK+NL HVWD II++A+K FY+ + TM+ A++ N+T+ WS
Sbjct: 797 VGFLGDLGGNTIQVPWYRRKSNLPHVWDNMIIESALKTFYSSDLATMIRAIQNNITENWS 618
Query: 407 DDIVHWENCKNKHATCANDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLAQ 228
+ WE+C C N YA ESI +C +AYK+ L DDYF SR P+VEKRLAQ
Sbjct: 617 NQQPLWEHCAPNPPVCPNPYAFESISLACKFAYKNASPGSPLEDDYFLSRLPVVEKRLAQ 438
Query: 227 AGIRLALVLNRIF 189
GIRLA LN IF
Sbjct: 437 GGIRLAAPLNPIF 399
>gb|DN499603.1|DN499603 T071E04.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T071E04 5', mRNA sequence
Length = 724
Score = 131 bits (280), Expect(2) = 2e-036
Identities = 51/103 (49%), Positives = 68/103 (66%)
Frame = -2 / +2
Query: 521 LHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANDYAI 342
LHHVWD II++++K FY+ + TM+ A++ N+T W WE+C + H CA+ YA
Sbjct: 104 LHHVWDTMIIESSLKTFYS*YLATMIRAIQNNVTHNWGKQQPLWEHCAHYHTVCAHPYAS 283
Query: 341 ESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLAQAGIRL 213
ESI +C +AY + TL DDYF SR P+VEKRLAQ GIRL
Sbjct: 284 ESIS*ACKFAYNNATPGSTLEDDYFLSRLPVVEKRLAQGGIRL 412
Score = 41.8 bits (85), Expect(2) = 2e-036
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -2 / +2
Query: 599 QPLHVGFEDDEGGNTITVHWYRRKANLHH 513
+PLHV D GGNTI V WYRR N H
Sbjct: 23 RPLHVSGLGDLGGNTIQVRWYRRIVNTLH 109
>gb|AJ780860.1|AJ780860 AJ780860 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900014C12F1, mRNA sequence
Length = 324
Score = 147 bits (315), Expect = 1e-034
Identities = 58/107 (54%), Positives = 74/107 (69%)
Frame = -2 / +3
Query: 536 RRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCA 357
RRK+NLHHV D II++A+K FY+ + TM+ A++ N+T+ WS+ WE+C + H C
Sbjct: 3 RRKSNLHHVRDNMIIESALKTFYSSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCP 182
Query: 356 NDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLAQAGIR 216
N YA ESI +C YAYK+ TL DDYF SR PIVEKRLAQ GIR
Sbjct: 183 NPYASESISLACKYAYKNATPGSTLEDDYFLSRLPIVEKRLAQGGIR 323
>gb|AJ780779.1|AJ780779 AJ780779 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900013C12F1, mRNA sequence
Length = 324
Score = 146 bits (314), Expect = 2e-034
Identities = 58/107 (54%), Positives = 73/107 (68%)
Frame = -2 / +3
Query: 536 RRKANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCA 357
RRK+NLHHV D II++A+K FY + TM+ A++ N+T+ WS+ WE+C + H C
Sbjct: 3 RRKSNLHHVRDNMIIESALKTFYRSDLATMIRAIQNNITENWSNQQPLWEHCAHNHTVCP 182
Query: 356 NDYAIESIHYSCNYAYKDVEQDITLGDDYFFSRYPIVEKRLAQAGIR 216
N YA ESI +C YAYK+ TL DDYF SR PIVEKRLAQ GIR
Sbjct: 183 NPYASESISLACKYAYKNATPGSTLEDDYFLSRLPIVEKRLAQGGIR 323
>gb|CA823121.1|CA823121 R21B07 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 595
Score = 112 bits (239), Expect(2) = 4e-028
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = -2 / +2
Query: 965 WGKEGHIMVCKIAEKYLSEKAAAAVQALLPESAGGELSTVCPWADQVRWHYHWASPLHYA 786
WGKEGH CKIAE YL+ +A AAV+ LLPESA G+L+ VC W D++R+HYHW+S LHY
Sbjct: 350 WGKEGHYATCKIAEGYLTAEALAAVKELLPESAEGDLANVCSWPDEIRFHYHWSSALHYV 529
Query: 785 NTP 777
+TP
Sbjct: 530 DTP 538
Score = 33.1 bits (66), Expect(2) = 4e-028
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2 / +2
Query: 770 CNFKYSRDCHNSRGQQ 723
CN++Y RDCH+S G++
Sbjct: 548 CNYEYXRDCHDSSGRK 595
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 452,259,560
Number of Sequences: 369679
Number of extensions: 6760831
Number of successful extensions: 127452
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 14655809904
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)