TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichoca... 210 7e-054
gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA librar... 209 2e-053
gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA librar... 209 2e-053
gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus ... 208 3e-053
gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus t... 208 3e-053
gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus ... 208 3e-053
gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus ... 208 3e-053
gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Popul... 208 3e-053
gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA librar... 206 1e-052
gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in... 200 5e-051
gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus ... 200 7e-051
gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus... 200 7e-051
gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus... 200 7e-051
gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Popul... 200 7e-051
gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus t... 200 7e-051
gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Pop... 200 7e-051
gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated wit... 195 2e-049
gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Po... 117 4e-049
gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Po... 189 1e-047
gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid lib... 189 1e-047
gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cD... 187 7e-047
gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA li... 182 1e-045
gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Popul... 158 1e-040
gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA librar... 164 6e-040
gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichoca... 136 1e-031
gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus... 134 4e-031
gb|BI069529.1|BI069529 C002P54U Populus strain T89 leaves P... 118 4e-031
gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichoca... 134 5e-031
gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium... 133 1e-030
gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA libra... 130 7e-030
gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus... 130 7e-030
gb|BP932002.1|BP932002 BP932002 full-length enriched poplar... 129 1e-029
gb|BP933403.1|BP933403 BP933403 full-length enriched poplar... 128 2e-029
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 119 4e-027
gb|CN522760.1|CN522760 GQ0123.B3_C19 GQ012 Populus trichoca... 119 1e-026
gb|DN493190.1|DN493190 X068E11.3pR Populus wood cDNA librar... 110 1e-023
gb|DT485310.1|DT485310 WS02527.B21_N20 PT-MB-N-A-15 Populus... 79 5e-023
gb|CV253436.1|CV253436 WS0221.B21_O23 PTxD-ICC-A-12 Populus... 79 5e-023
gb|CF228442.1|CF228442 PtaXM0013A9A0901 Poplar cDNA library... 79 5e-023
gb|CF233701.1|CF233701 PtaJXO0026F5F0511 Poplar cDNA librar... 79 5e-023
gb|DN503210.1|DN503210 X068E11.5pR Populus wood cDNA librar... 107 7e-023
gb|BU891564.1|BU891564 P052B10 Populus petioles cDNA librar... 74 9e-022
>gb|CN550311.1|CN550311 GQ0243.B3_G13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_G13 5', mRNA sequence
Length = 686
Score = 210 bits (453), Expect = 7e-054
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAFMPTGWG+LLIAQA +PV+Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 181 VIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 360
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGGH+KDR +R+KE*
Sbjct: 361 PFVSEFQTRMLFNQAFSRGLQISRILGGHRKDRSSRNKE* 480
Score = 131 bits (281), Expect = 4e-030
Identities = 60/98 (61%), Positives = 63/98 (64%)
Frame = -2 / -1
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXX 122
YSL RSFL PPR+REICRPLL AWLNSI VWNSDT GNQAR A GVN
Sbjct: 479 YSLFLEERSFLWPPRMREICRPLLNAWLNSIRVWNSDTKGNQARNATGVNRSKPITISYP 300
Query: 121 XXXALIDPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP +P * TGL A AI+S P PVGMKARM T
Sbjct: 299 RASVRTDPQNPAR*TTGLQA*AIKSIPQPVGMKARMHT 186
>gb|DN493079.1|DN493079 X055G01.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 3', mRNA sequence
Length = 632
Score = 209 bits (450), Expect = 2e-053
Identities = 81/98 (82%), Positives = 92/98 (93%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAFMPTGWG+LLIAQA +PV+Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 545 VIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 366
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSK 296
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR +R+K
Sbjct: 365 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRSSRNK 252
Score = 128 bits (274), Expect = 3e-029
Identities = 58/91 (63%), Positives = 60/91 (65%)
Frame = -2 / +1
Query: 280 RSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALID 101
RSFL PPRIREICRPLL AWLNSI VWNSDT GNQAR A GVN D
Sbjct: 268 RSFLWPPRIREICRPLLNAWLNSIRVWNSDTKGNQARNATGVNRSKPMTISYPRASVRTD 447
Query: 100 PHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
P +P * TGL A AI+S P PVGMKARM T
Sbjct: 448 PQNPAR*TTGLQA*AIKSIPQPVGMKARMHT 540
>gb|DN503094.1|DN503094 X055G01.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X055G01 5', mRNA sequence
Length = 599
Score = 209 bits (450), Expect = 2e-053
Identities = 81/98 (82%), Positives = 92/98 (93%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAFMPTGWG+LLIAQA +PV+Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 88 VIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 267
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSK 296
PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR +R+K
Sbjct: 268 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRSSRNK 381
Score = 128 bits (274), Expect = 3e-029
Identities = 58/91 (63%), Positives = 60/91 (65%)
Frame = -2 / -1
Query: 280 RSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVNXXXXXXXXXXXXXALID 101
RSFL PPRIREICRPLL AWLNSI VWNSDT GNQAR A GVN D
Sbjct: 365 RSFLWPPRIREICRPLLNAWLNSIRVWNSDTKGNQARNATGVNRSKPMTISYPRASVRTD 186
Query: 100 PHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
P +P * TGL A AI+S P PVGMKARM T
Sbjct: 185 PQNPAR*TTGLQA*AIKSIPQPVGMKARMHT 93
>gb|CV232074.1|CV232074 WS0196.B21_H14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_H14 3', mRNA sequence
Length = 677
Score = 208 bits (448), Expect = 3e-053
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWG+LLIAQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 479 IFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWF 300
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 299 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRSSRNKE* 180
Score = 110 bits (235), Expect = 8e-024
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +2 / -3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
HLC+H C HA+W+G A DC S QA S R +G+ +C LR+ G +PVH+ C PCLV
Sbjct: 480 HLCMHSCFHANWLGDAFDCTSMQANRSTSRVLGISSDACSWLRNRYGLAPVHSSCIPCLV 301
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+ V +PD AVQP + RSA+ R +E EQGV+
Sbjct: 300 SICV*IPDSYAVQPSI**RSANFSNSWRPKEGSLFKEQGVI 178
Score = 96.8 bits (205), Expect(2) = 3e-028
Identities = 40/50 (80%), Positives = 41/50 (82%)
Frame = -2 / +1
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PPRIREICRPLL AWLNSI VWNSDTNGNQAR A GVN
Sbjct: 181 HSLFLEERSFLGPPRIREICRPLLNAWLNSIRVWNSDTNGNQARNATGVN 330
Score = 48.3 bits (99), Expect(2) = 3e-028
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = -2 / +1
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P * GL A AI+S P PVGMKARM TKM
Sbjct: 379 DPQNPAR*TIGLHACAIKSIPQPVGMKARMHTKM 480
>gb|CV246263.1|CV246263 WS0111.B21_N04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_N04 3', mRNA sequence
Length = 722
Score = 208 bits (448), Expect = 3e-053
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWG+LLIAQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 479 IFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWF 300
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 299 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRSSRNKE* 180
Score = 110 bits (235), Expect = 8e-024
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +2 / -3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
HLC+H C HA+W+G A DC S QA S R +G+ +C LR+ G +PVH+ C PCLV
Sbjct: 480 HLCMHSCFHANWLGDAFDCTSMQANRSTSRVLGISSDTCSWLRNRYGLAPVHSSCIPCLV 301
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+ V +PD AVQP + RSA+ R +E EQGV+
Sbjct: 300 SICV*IPDSYAVQPSI**RSANFSNSWRPKEGSLFKEQGVI 178
Score = 96.8 bits (205), Expect(2) = 3e-028
Identities = 40/50 (80%), Positives = 41/50 (82%)
Frame = -2 / +1
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PPRIREICRPLL AWLNSI VWNSDTNGNQAR A GVN
Sbjct: 181 HSLFLEERSFLGPPRIREICRPLLNAWLNSIRVWNSDTNGNQARNATGVN 330
Score = 48.3 bits (99), Expect(2) = 3e-028
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = -2 / +1
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P * GL A AI+S P PVGMKARM TKM
Sbjct: 379 DPQNPAR*TIGLHACAIKSIPQPVGMKARMHTKM 480
>gb|CV248266.1|CV248266 WS01120.B21_A19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A19 3', mRNA sequence
Length = 595
Score = 208 bits (448), Expect = 3e-053
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWG+LLIAQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 480 IFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWF 301
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 300 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRSSRNKE* 181
Score = 110 bits (235), Expect = 8e-024
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +2 / -1
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
HLC+H C HA+W+G A DC S QA S R +G+ +C LR+ G +PVH+ C PCLV
Sbjct: 481 HLCMHSCFHANWLGDAFDCTSMQANRSTSRVLGISSDTCSWLRNRYGLAPVHSSCIPCLV 302
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+ V +PD AVQP + RSA+ R +E EQGV+
Sbjct: 301 SICV*IPDSYAVQPSI**RSANFSNSWRPKEGSLFKEQGVI 179
Score = 96.8 bits (205), Expect(2) = 3e-028
Identities = 40/50 (80%), Positives = 41/50 (82%)
Frame = -2 / +2
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PPRIREICRPLL AWLNSI VWNSDTNGNQAR A GVN
Sbjct: 182 HSLFLEERSFLGPPRIREICRPLLNAWLNSIRVWNSDTNGNQARNATGVN 331
Score = 48.3 bits (99), Expect(2) = 3e-028
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = -2 / +2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P * GL A AI+S P PVGMKARM TKM
Sbjct: 380 DPQNPAR*TIGLHACAIKSIPQPVGMKARMHTKM 481
>gb|CV249853.1|CV249853 WS01125.B21_I08 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_I08 3', mRNA sequence
Length = 735
Score = 208 bits (448), Expect = 3e-053
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWG+LLIAQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 479 IFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWF 300
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 299 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRSSRNKE* 180
Score = 110 bits (235), Expect = 8e-024
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +2 / -1
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
HLC+H C HA+W+G A DC S QA S R +G+ +C LR+ G +PVH+ C PCLV
Sbjct: 480 HLCMHSCFHANWLGDAFDCTSMQANRSTSRVLGISSDTCSWLRNRYGLAPVHSSCIPCLV 301
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+ V +PD AVQP + RSA+ R +E EQGV+
Sbjct: 300 SICV*IPDSYAVQPSI**RSANFSNSWRPKEGSLFKEQGVI 178
Score = 96.8 bits (205), Expect(2) = 3e-028
Identities = 40/50 (80%), Positives = 41/50 (82%)
Frame = -2 / +1
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PPRIREICRPLL AWLNSI VWNSDTNGNQAR A GVN
Sbjct: 181 HSLFLEERSFLGPPRIREICRPLLNAWLNSIRVWNSDTNGNQARNATGVN 330
Score = 48.3 bits (99), Expect(2) = 3e-028
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = -2 / +1
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P * GL A AI+S P PVGMKARM TKM
Sbjct: 379 DPQNPAR*TIGLHACAIKSIPQPVGMKARMHTKM 480
>gb|CV256705.1|CV256705 WS0244.B21_J09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_J09 3', mRNA sequence
Length = 834
Score = 208 bits (448), Expect = 3e-053
Identities = 82/100 (82%), Positives = 94/100 (94%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWG+LLIAQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 484 IFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWF 305
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 304 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRSSRNKE* 185
Score = 111 bits (236), Expect = 6e-024
Identities = 46/101 (45%), Positives = 61/101 (60%)
Frame = +2 / -2
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
HLC+H C HA+W+G A DC S QA S R +G+ +C LR+ G +PVH+ C PCLV
Sbjct: 485 HLCMHSCFHANWLGDAIDCTSMQANRSTSRVLGISSDTCSWLRNRYGLAPVHSSCIPCLV 306
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+ V +PD AVQP + RSA+ R +E EQGV+
Sbjct: 305 SICV*IPDSYAVQPSI**RSANFSNSWRPKEGSLFKEQGVI 183
Score = 96.8 bits (205), Expect(2) = 5e-028
Identities = 40/50 (80%), Positives = 41/50 (82%)
Frame = -2 / +3
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PPRIREICRPLL AWLNSI VWNSDTNGNQAR A GVN
Sbjct: 186 HSLFLEERSFLGPPRIREICRPLLNAWLNSIRVWNSDTNGNQARNATGVN 335
Score = 47.3 bits (97), Expect(2) = 5e-028
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = -2 / +3
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P * GL A AI S P PVGMKARM TKM
Sbjct: 384 DPQNPAR*TIGLHACAINSIPQPVGMKARMHTKM 485
>gb|DN494975.1|DN494975 N009C11.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009C11 5', mRNA sequence
Length = 826
Score = 206 bits (444), Expect = 1e-052
Identities = 81/100 (81%), Positives = 93/100 (93%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
IFVCILAFMPTGWG+LLIAQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 397 IFVCILAFMPTGWGMLLIAQACKPIVQRAGFWGSVQTLARGYEIIMGLLLFTPVAFLAWF 576
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG + DR +R+KE*
Sbjct: 577 PFVSEFQTRMLFNQAFSRGLQISRILGGPRNDRSSRNKE* 696
Score = 107 bits (229), Expect = 5e-023
Identities = 45/101 (44%), Positives = 60/101 (59%)
Frame = +2 / +3
Query: 2 HLCLHPCLHAHWMGFAPDCPSYQACDSKDRAVGVDQGSCPGLRDPNGASPVHAHCFPCLV 181
HLC+H C HA+W+G A DC S QA S R +G+ +C LR+ G +PVH+ C PCLV
Sbjct: 396 HLCMHSCFHANWLGDAFDCTSMQAYRSTSRVLGISSDTCSWLRNHYGLAPVHSSCIPCLV 575
Query: 182 PVRVRVPDQDAVQPGLQQRSADLPYPGRTQERPRDAEQGVV 304
+ V +PD AVQP + RS + R +E EQGV+
Sbjct: 576 SICV*IPDSYAVQPSI**RSPNFSNSWRPKE*SLFKEQGVI 698
Score = 91.8 bits (194), Expect(2) = 8e-027
Identities = 39/50 (78%), Positives = 40/50 (80%)
Frame = -2 / -3
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PPRIREI RPLL AWLNSI VWNSDTNGNQAR A GVN
Sbjct: 695 HSLFLEERSFLGPPRIREIWRPLLNAWLNSIRVWNSDTNGNQARNATGVN 546
Score = 48.3 bits (99), Expect(2) = 8e-027
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = -2 / -3
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQTKM 2
DP +P * GL A AI+S P PVGMKARM TKM
Sbjct: 497 DPQNPAR*TIGLHACAIKSIPQPVGMKARMHTKM 396
>gb|AJ772216.1|AJ772216 AJ772216 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700003A08F1, mRNA sequence
Length = 527
Score = 200 bits (432), Expect = 5e-051
Identities = 81/100 (81%), Positives = 92/100 (92%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 497 IIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 318
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 317 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 198
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 196 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 348
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +1
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 397 DPQKPACCISGLQACAISSSPHPEGKNARMQT 492
>gb|CV228298.1|CV228298 WS0191.B21_K13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_K13 3', mRNA sequence
Length = 735
Score = 200 bits (431), Expect = 7e-051
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 669 VIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 490
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 489 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 370
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / +2
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 368 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 520
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 569 DPQKPACCISGLQACAISSSPHPEGKNARMQT 664
>gb|CV229682.1|CV229682 WS01914.B21_B17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01914_B17 3', mRNA sequence
Length = 679
Score = 200 bits (431), Expect = 7e-051
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 669 VIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 490
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 489 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 370
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / +2
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 368 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 520
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 569 DPQKPACCISGLQACAISSSPHPEGKNARMQT 664
>gb|CV230081.1|CV230081 WS01915.B21_F22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_F22 3', mRNA sequence
Length = 664
Score = 200 bits (431), Expect = 7e-051
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 35 VIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 214
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 215 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 334
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / -2
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 336 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 184
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / -2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 135 DPQKPACCISGLQACAISSSPHPEGKNARMQT 40
>gb|CV264055.1|CV264055 WS02023.B21_H24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_H24 3', mRNA sequence
Length = 839
Score = 200 bits (431), Expect = 7e-051
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 670 VIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 491
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 490 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 371
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 369 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 521
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +3
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 570 DPQKPACCISGLQACAISSSPHPEGKNARMQT 665
>gb|CV275032.1|CV275032 WS0175.B21_C07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_C07 3', mRNA sequence
Length = 826
Score = 200 bits (431), Expect = 7e-051
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 655 VIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 476
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 475 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 356
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 354 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 506
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +3
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 555 DPQKPACCISGLQACAISSSPHPEGKNARMQT 650
>gb|DT524325.1|DT524325 WS02042.C21.1_F05 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_F05 3', mRNA sequence
Length = 884
Score = 200 bits (431), Expect = 7e-051
Identities = 80/100 (80%), Positives = 92/100 (92%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 672 VIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 493
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 492 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 373
Score = 90.0 bits (190), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / +2
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 371 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 523
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 572 DPQKPACCISGLQACAISSSPHPEGKNARMQT 667
>gb|CX168355.1|CX168355 A12_69-60_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 664
Score = 195 bits (421), Expect = 2e-049
Identities = 79/100 (79%), Positives = 91/100 (91%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ V ILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 81 VIVSILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 260
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+KE*
Sbjct: 261 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRNKE* 380
Score = 90.0 bits (190), Expect(2) = 1e-023
Identities = 38/51 (74%), Positives = 41/51 (80%)
Frame = -2 / -1
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+YSL RSFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 382 HYSLFLEVRSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 230
Score = 39.6 bits (80), Expect(2) = 1e-023
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = -2 / -1
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARM T
Sbjct: 181 DPQKPACCISGLQACAISSSPHPEGKNARMLT 86
>gb|BU897357.1|BU897357 X055G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 426
Score = 117 bits (250), Expect(2) = 4e-049
Identities = 44/62 (70%), Positives = 53/62 (85%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VCILAFMPTGWG+LLIAQA +PV+Q+ G WGS++ LARGYEI+MGLLLFTP+AF
Sbjct: 89 VIVCILAFMPTGWGMLLIAQACKPVVQRAGFWGSVRTLARGYEIVMGLLLFTPVAFPRLV 268
Query: 183 PF 188
PF
Sbjct: 269 PF 274
Score = 97.3 bits (206), Expect(2) = 4e-049
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3 / +3
Query: 171 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSK 296
LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDR +R+K
Sbjct: 258 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRSSRNK 383
Score = 84.0 bits (177), Expect(2) = 2e-025
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = -2 / -3
Query: 280 RSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARK 167
RSFL PPRIREICRPLL AWLNSI VWNSDT GNQAR+
Sbjct: 367 RSFLWPPRIREICRPLLNAWLNSIRVWNSDTKGNQARE 254
Score = 51.5 bits (106), Expect(2) = 2e-025
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = -1 / -3
Query: 173 KESNGREQEKPH*DLVAPGKSLDRPPQPDLLNHRPDSLGNQEQTPSSGHEGKDANKD 3
+E N EQE+ H D + K + P+P LN+R SL NQE +P+ HE ++A D
Sbjct: 259 RECNWSEQEQAHDDFIPTCKCPN*SPKPGSLNNRFTSLSNQEHSPTGWHESENAYND 89
>gb|BU896477.1|BU896477 X041A06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 189 bits (408), Expect = 1e-047
Identities = 76/95 (80%), Positives = 86/95 (90%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 72 IIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 251
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVSEFQTRMLFNQAFSRGLQISRILGG +K+ T
Sbjct: 252 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKEDRT 356
Score = 86.3 bits (182), Expect(2) = 2e-023
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = -2 / -3
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
Y L V SFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 373 YSLFLEVRSSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 221
Score = 42.8 bits (87), Expect(2) = 2e-023
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / -3
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 172 DPQKPACCISGLQACAISSSPHPEGKNARMQT 77
>gb|CK088908.1|CK088908 A079P12.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A079P12 3', mRNA sequence
Length = 683
Score = 189 bits (408), Expect = 1e-047
Identities = 76/95 (80%), Positives = 86/95 (90%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLAWF
Sbjct: 644 IIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWF 465
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVSEFQTRMLFNQAFSRGLQISRILGG +K+ T
Sbjct: 464 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKEDRT 360
Score = 86.3 bits (182), Expect(2) = 2e-023
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
Y L V SFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 343 YSLFLEVRSSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 495
Score = 42.8 bits (87), Expect(2) = 2e-023
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / +1
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 544 DPQKPACCISGLQACAISSSPHPEGKNARMQT 639
>gb|BU819078.1|BU819078 UA39BPB02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 497
Score = 187 bits (402), Expect = 7e-047
Identities = 75/95 (78%), Positives = 85/95 (89%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAF P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MG+LLFTP+AFLAWF
Sbjct: 108 IIVCILAFCPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGVLLFTPVAFLAWF 287
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVSEFQTRMLFNQAFSRGLQISRILGG +K+ T
Sbjct: 288 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKEDRT 392
Score = 86.3 bits (182), Expect(2) = 1e-023
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = -2 / -2
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
Y L V SFL PPRIREI RP LKAWLNSI VWNS+TNGNQA+ A GVN
Sbjct: 409 YSLFLEVRSSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGNQAKNATGVN 257
Score = 43.2 bits (88), Expect(2) = 1e-023
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / -2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 208 DPQKPACCISGLQACAISSSPHPEGQNARMQT 113
>gb|BU831269.1|BU831269 T019F02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 694
Score = 182 bits (393), Expect = 1e-045
Identities = 75/95 (78%), Positives = 85/95 (89%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
I VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AFLA F
Sbjct: 191 IIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFLA*F 370
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGT 287
PFVSEFQTRMLFNQAFSRGLQISRILGG +K+ T
Sbjct: 371 PFVSEFQTRMLFNQAFSRGLQISRILGGPRKEDRT 475
Score = 82.2 bits (173), Expect(2) = 3e-022
Identities = 36/51 (70%), Positives = 38/51 (74%)
Frame = -2 / -2
Query: 304 YYSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
Y L V SFL PPRIREI RP LKAWLNSI VWNS+TNGN A+ A GVN
Sbjct: 492 YSLFLEVRSSFLGPPRIREI*RPRLKAWLNSIRVWNSETNGN*AKNATGVN 340
Score = 42.8 bits (87), Expect(2) = 3e-022
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -2 / -2
Query: 103 DPHSPIF*ITGLIAWAIRSKPHPVGMKARMQT 8
DP P I+GL A AI S PHP G ARMQT
Sbjct: 291 DPQKPACCISGLQACAISSSPHPEGKNARMQT 196
>gb|CV259929.1|CV259929 WS02012.B21_K15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_K15 3', mRNA sequence
Length = 495
Score = 158 bits (340), Expect(2) = 1e-040
Identities = 64/87 (73%), Positives = 75/87 (86%)
Frame = +3 / -3
Query: 42 GLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFN 221
G AQA +P++Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWFPF SEFQTRMLFN
Sbjct: 448 GCF*FAQACKPIVQRAGFWGSVQTLARGYEIVMGLLLFTPVAFLAWFPFGSEFQTRMLFN 269
Query: 222 QAFSRGLQISRILGGHKKDRGTRSKE* 302
QAFSRGLQISRI GG +KDR +R+KE*
Sbjct: 268 QAFSRGLQISRIFGGPRKDRFSRNKE* 188
Score = 91.3 bits (193), Expect(2) = 6e-022
Identities = 37/50 (74%), Positives = 40/50 (80%)
Frame = -2 / +3
Query: 301 YSLLRVPRSFLCPPRIREICRPLLKAWLNSILVWNSDTNGNQARKAMGVN 152
+SL RSFL PP+IREIC+PLL AWLNSI VWNSD NGNQAR A GVN
Sbjct: 189 HSLFLEKRSFLGPPKIREICKPLLNAWLNSIRVWNSDPNGNQARNATGVN 338
Score = 32.2 bits (64), Expect(2) = 6e-022
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 55 IRSKPHPVGMKARMQTK 5
I+S P PVGMKARM TK
Sbjct: 436 IKSIPQPVGMKARMPTK 486
Score = 28.1 bits (55), Expect(2) = 1e-040
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2 / -1
Query: 8 CLHPCLHAHWMGFAPD 55
C H C H++W+G A D
Sbjct: 483 CRHSCFHSNWLGDAFD 436
>gb|BU891366.1|BU891366 P049D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 371
Score = 164 bits (352), Expect = 6e-040
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +3 / +3
Query: 42 GLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFN 221
G+LLIAQA +PV Q+ G WGS++ LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRML N
Sbjct: 3 GMLLIAQACKPVAQRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLVN 182
Query: 222 QAFSRGLQISRILGGHKKDRGTRSKE 299
QAF+RGLQ S LGGH KDR +R+KE
Sbjct: 183 QAFNRGLQTSSTLGGHNKDRSSRNKE 260
>gb|CN517705.1|CN517705 GQ0092.B3_H22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H22 5', mRNA sequence
Length = 481
Score = 136 bits (292), Expect = 1e-031
Identities = 56/66 (84%), Positives = 63/66 (95%)
Frame = +3 / +3
Query: 105 IKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRG 284
++ LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG +KDR
Sbjct: 3 VRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRT 182
Query: 285 TRSKE* 302
+R+KE*
Sbjct: 183 SRNKE* 200
>gb|DT469857.1|DT469857 WS01919.C21_B19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_B19 3', mRNA sequence
Length = 651
Score = 134 bits (288), Expect = 4e-031
Identities = 53/87 (60%), Positives = 72/87 (82%)
Frame = +3 / -2
Query: 24 FMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQ 203
F+PT WG+L IA A +PV++++GLW SI+++AR Y+ MG+L+F PIAFL+WFPFVS FQ
Sbjct: 650 FIPTIWGILSIASAWKPVMKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQ 471
Query: 204 TRMLFNQAFSRGLQISRILGGHKKDRG 284
TR++FNQAFSRGL+IS IL G+ + G
Sbjct: 470 TRLMFNQAFSRGLEISLILAGNNPNIG 390
>gb|BI069529.1|BI069529 C002P54U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 369
Score = 118 bits (252), Expect(2) = 4e-031
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAW 179
I VCILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI MGLLLFTP+AFLAW
Sbjct: 68 IIVCILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIXMGLLLFTPVAFLAW 244
Score = 35.9 bits (72), Expect(2) = 4e-031
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3 / +1
Query: 171 LAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE 299
L PFVSE QTRML NQAF + S + G + S++
Sbjct: 235 LGLVPFVSEXQTRMLXNQAFKSEVFRSPVFFGGPRKEDRTSRK 363
>gb|CN549860.1|CN549860 GQ0243.B3_A18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_A18 5', mRNA sequence
Length = 536
Score = 134 bits (287), Expect = 5e-031
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +3 / +1
Query: 114 LARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRS 293
LARGYEI+MGLLLFTP+AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG +KDR +R+
Sbjct: 1 LARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGPRKDRTSRN 180
Query: 294 KE* 302
KE*
Sbjct: 181 KE* 189
>gb|CK096914.1|CK096914 UB32BPD05.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB32BPD05 3', mRNA sequence
Length = 579
Score = 133 bits (285), Expect = 1e-030
Identities = 53/90 (58%), Positives = 66/90 (73%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ VC LAF+PTGWGL+LIAQA RP I++ GLW + LAR Y+ M ++LF P+A LAW
Sbjct: 397 LIVCCLAFLPTGWGLILIAQAARPKIEETGLWHFTRVLARAYDYGMSVVLFAPVAVLAWL 218
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
P +S FQTR LFN+AF+R LQI IL G K
Sbjct: 217 PVISAFQTRFLFNEAFNRHLQIQPILAGKK 128
>gb|CF235857.1|CF235857 PtaJXT0027H12H1216 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 615
Score = 130 bits (279), Expect = 7e-030
Identities = 52/90 (57%), Positives = 69/90 (76%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L IA A + ++ +GLW S++ AR Y+ MG+L+F PIAFL+WF
Sbjct: 166 LFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWF 345
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVS FQ+R+LFNQAFSRGL+IS IL G+K
Sbjct: 346 PFVSTFQSRLLFNQAFSRGLEISLILAGNK 435
>gb|CV229637.1|CV229637 WS01913.B21_P11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_P11 3', mRNA sequence
Length = 718
Score = 130 bits (279), Expect = 7e-030
Identities = 52/90 (57%), Positives = 69/90 (76%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L IA A + ++ +GLW S++ AR Y+ MG+L+F PIAFL+WF
Sbjct: 540 LFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWF 361
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVS FQ+R+LFNQAFSRGL+IS IL G+K
Sbjct: 360 PFVSTFQSRLLFNQAFSRGLEISLILAGNK 271
>gb|BP932002.1|BP932002 BP932002 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_I23.r 3', mRNA sequence
Length = 587
Score = 129 bits (277), Expect = 1e-029
Identities = 52/90 (57%), Positives = 68/90 (75%)
Frame = +3 / -1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L IA A + ++ +GLW S++ AR Y+ MG L+F PIAFL+WF
Sbjct: 545 LFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFVPIAFLSWF 366
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVS FQ+R+LFNQAFSRGL+IS IL G+K
Sbjct: 365 PFVSTFQSRLLFNQAFSRGLEISLILAGNK 276
>gb|BP933403.1|BP933403 BP933403 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_P13.r 3', mRNA sequence
Length = 620
Score = 128 bits (275), Expect = 2e-029
Identities = 52/90 (57%), Positives = 67/90 (74%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F LAF+ TGW +L IA A + ++ +GLW S++ AR Y+ MG L+F PIAFL+WF
Sbjct: 547 LFASFLAFIATGWTILSIAIAWKRIVWSLGLWDSVREFARMYDAGMGALIFVPIAFLSWF 368
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVS FQ R+LFNQAFSRGL+IS IL G+K
Sbjct: 367 PFVSTFQPRLLFNQAFSRGLEISLILAGNK 278
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 119 bits (254), Expect(2) = 4e-027
Identities = 47/77 (61%), Positives = 64/77 (83%)
Frame = +3 / +3
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IA A +PV++++GLW SI+++AR Y+ MG+L+F PIAFL+WFPFVS FQTR++FNQAFS
Sbjct: 30894 IASAWKPVVKRMGLWKSIRSIARLYDAGMGMLIFIPIAFLSWFPFVSTFQTRLMFNQAFS 31073
Query: 234 RGLQISRILGGHKKDRG 284
RGL+IS IL G+ + G
Sbjct: 31074 RGLEISLILAGNNPNIG 31124
Score = 30.9 bits (61), Expect(2) = 4e-027
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIA 59
IF ILAF+PT WG+L ++
Sbjct: 30121 IFASILAFIPTIWGILSVS 30177
>gb|CN522760.1|CN522760 GQ0123.B3_C19 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0123_C19 5', mRNA sequence
Length = 336
Score = 119 bits (255), Expect = 1e-026
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ V ILAF+P+GWGLLLIAQA +P+IQ G WGS++ LARGYEI+MGLLLFTP+AF F
Sbjct: 127 VIVSILAFLPSGWGLLLIAQACKPLIQHAGFWGSVRTLARGYEIVMGLLLFTPVAFXXXF 306
Query: 183 PFVSEFQTR 209
PFVS TR
Sbjct: 307 PFVSXXXTR 333
>gb|DN493190.1|DN493190 X068E11.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X068E11 3', mRNA sequence
Length = 807
Score = 110 bits (234), Expect = 1e-023
Identities = 44/73 (60%), Positives = 58/73 (79%)
Frame = +3 / -3
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IA A + ++ +GLW S++ AR Y+ MG+L+F PIAFL+WFPFVS FQ+R+LFNQAFS
Sbjct: 637 IAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAFS 458
Query: 234 RGLQISRILGGHK 272
RGL+IS IL G+K
Sbjct: 457 RGLEISLILAGNK 419
>gb|DT485310.1|DT485310 WS02527.B21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_N20 3', mRNA sequence
Length = 840
Score = 78.5 bits (165), Expect(2) = 5e-023
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +3 / -3
Query: 93 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
LW ++ ++AR Y+IL G+++ P+AFL+W P QTR+LFN+AFSRGL+I ++ G K
Sbjct: 589 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGKK 410
Score = 48.7 bits (100), Expect(2) = 5e-023
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / -3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKI 89
+F +LAF+PTGWG+LLIAQ +RP + I
Sbjct: 676 VFTSLLAFIPTGWGILLIAQVLRPFLPAI 590
>gb|CV253436.1|CV253436 WS0221.B21_O23 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_O23 3', mRNA sequence
Length = 741
Score = 78.5 bits (165), Expect(2) = 5e-023
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +3 / -2
Query: 93 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
LW ++ ++AR Y+IL G+++ P+AFL+W P QTR+LFN+AFSRGL+I ++ G K
Sbjct: 587 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGKK 408
Score = 48.7 bits (100), Expect(2) = 5e-023
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKI 89
+F +LAF+PTGWG+LLIAQ +RP + I
Sbjct: 674 VFTSLLAFIPTGWGILLIAQVLRPFLPAI 588
>gb|CF228442.1|CF228442 PtaXM0013A9A0901 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 722
Score = 78.5 bits (165), Expect(2) = 5e-023
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +3 / +2
Query: 93 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
LW ++ ++AR Y+IL G+++ P+AFL+W P QTR+LFN+AFSRGL+I ++ G K
Sbjct: 155 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGKK 334
Score = 48.7 bits (100), Expect(2) = 5e-023
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKI 89
+F +LAF+PTGWG+LLIAQ +RP + I
Sbjct: 68 VFTSLLAFIPTGWGILLIAQVLRPFLPAI 154
>gb|CF233701.1|CF233701 PtaJXO0026F5F0511 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 654
Score = 78.5 bits (165), Expect(2) = 5e-023
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +3 / +1
Query: 93 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
LW ++ ++AR Y+IL G+++ P+AFL+W P QTR+LFN+AFSRGL+I ++ G K
Sbjct: 205 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIFQLFTGKK 384
Score = 48.7 bits (100), Expect(2) = 5e-023
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKI 89
+F +LAF+PTGWG+LLIAQ +RP + I
Sbjct: 118 VFTSLLAFIPTGWGILLIAQVLRPFLPAI 204
>gb|DN503210.1|DN503210 X068E11.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X068E11 5', mRNA sequence
Length = 524
Score = 107 bits (228), Expect = 7e-023
Identities = 43/71 (60%), Positives = 56/71 (78%)
Frame = +3 / +3
Query: 54 IAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFS 233
IA A + ++ +GLW S++ AR Y+ MG+L+F PIAFL+WFPFVS FQ+R+LFNQAFS
Sbjct: 312 IAIAWKRIVWSLGLWDSVREFARMYDAGMGVLIFVPIAFLSWFPFVSTFQSRLLFNQAFS 491
Query: 234 RGLQISRILGG 266
RGL+IS IL G
Sbjct: 492 RGLEISLILAG 524
>gb|BU891564.1|BU891564 P052B10 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 558
Score = 74.4 bits (156), Expect(2) = 9e-022
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +3 / +2
Query: 93 LWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 266
LW ++ ++AR Y+IL G+++ P+AFL+W P QT +LFN+AFSRGL+I ++ G
Sbjct: 383 LWEAVVSVARLYDILFGVIVMVPVAFLSWMPAFQSMQTTILFNEAFSRGLRIFQLFTG 556
Score = 48.7 bits (100), Expect(2) = 9e-022
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKI 89
+F +LAF+PTGWG+LLIAQ +RP + I
Sbjct: 296 VFTSLLAFIPTGWGILLIAQVLRPFLPAI 382
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 310,165,599
Number of Sequences: 369679
Number of extensions: 4428979
Number of successful extensions: 56854
Number of sequences better than 1.0e-020: 53
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7587135145
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)