TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCS16e03.yg.2.1
         (608 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF667932.1|CF667932  RTCNT1_33_H11.b1_A029 Root control P...   126   1e-037
dbj|BD266974.1|  Compositions isolated from plant cells and ...   115   8e-029
gb|CF397914.1|CF397914  RTDS3_23_F01.g1_A022 Drought-stresse...   100   3e-025
>gb|CF667932.1|CF667932 RTCNT1_33_H11.b1_A029 Root control Pinus taeda cDNA clone
           RTCNT1_33_H11_A029 3', mRNA sequence
          Length = 682

 Score =  126 bits (270), Expect(3) = 1e-037
 Identities = 51/88 (57%), Positives = 65/88 (73%)
 Frame = -2 / -1

                                                                       
Query: 370 APIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGL 191
           +P  S +++L +S+EDTGVGIP +AQ RVF PFMQ   S +R +GGTGIGLSIS+ LV L
Sbjct: 514 SPETSQTVNLCVSIEDTGVGIPLNAQERVFVPFMQADSSTSRTYGGTGIGLSISRFLVEL 335

                                       
Query: 190 MRGEIGFASKPQVGSTFTFTAVLTRAHS 107
           M G + F SKP +GSTF FTAV  + H+
Sbjct: 334 MNGRMDFVSKPAIGSTFVFTAVFKKGHT 251

 Score = 39.6 bits (80), Expect(3) = 1e-037
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -2 / -1

                                        
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
           ++E  ++ FKG+ ALV+D RP+RA VT Y
Sbjct: 220 QSEALTTVFKGMRALVIDGRPIRASVTEY 134

 Score = 28.6 bits (56), Expect(3) = 1e-037
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2 / -1

                                   
Query: 478 TQSANTLSGYPVANRKRSWENFRV 407
           + S NTLSG    + + +WENF++
Sbjct: 637 SSSCNTLSGCEAFDVRSNWENFKL 566
>dbj|BD266974.1| Compositions isolated from plant cells and utilization of the same
           in modifying plant cell signal transduction
          Length = 1489

 Score =  115 bits (246), Expect(2) = 8e-029
 Identities = 47/70 (67%), Positives = 56/70 (80%)
 Frame = -2 / +1

                                                                       
Query: 334 SVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQ 155
           S EDTG+GIP  AQ RVFTPFMQ   S +R +GGTGIGLSIS+CL+ LM GEI F S+P 
Sbjct: 10  STEDTGIGIPLPAQHRVFTPFMQADSSTSRTYGGTGIGLSISRCLIELMGGEIRFISRPG 189

                     
Query: 154 VGSTFTFTAV 125
           +GSTF+FTA+
Sbjct: 190 IGSTFSFTAL 219

 Score = 31.3 bits (62), Expect(2) = 8e-029
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2 / +1

                                        
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
           R     + FKG+ ALV+D  PV + VT+Y
Sbjct: 265 RGARLPTHFKGMKALVLDGNPVCSLVTKY 351
>gb|CF397914.1|CF397914 RTDS3_23_F01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
           taeda cDNA clone RTDS3_23_F01_A022 5', mRNA sequence
          Length = 406

 Score =  100 bits (212), Expect(2) = 3e-025
 Identities = 41/63 (65%), Positives = 49/63 (77%)
 Frame = -2 / +1

                                                                       
Query: 313 GIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTF 134
           GIP  AQ RVFTPFM    S +R +GGTGIGLSIS+CL+ LM GEI F S+P +GSTF+F
Sbjct: 1   GIPLPAQHRVFTPFMHADSSTSRTYGGTGIGLSISRCLIELMGGEIRFISRPGIGSTFSF 180

              
Query: 133 TAV 125
           TA+
Sbjct: 181 TAL 189

 Score = 35.0 bits (70), Expect(2) = 3e-025
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2 / +1

                                        
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
           R     + FKG+ ALV+D  PVR+ VT+Y
Sbjct: 235 RGARLPTHFKGMKALVLDGNPVRSLVTKY 321
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 295,076,422
Number of Sequences: 355925
Number of extensions: 4444510
Number of successful extensions: 50078
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8195309070
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)