TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS16e03.yg.2.1
(608 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF667932.1|CF667932 RTCNT1_33_H11.b1_A029 Root control P... 126 1e-037
dbj|BD266974.1| Compositions isolated from plant cells and ... 115 8e-029
gb|CF397914.1|CF397914 RTDS3_23_F01.g1_A022 Drought-stresse... 100 3e-025
>gb|CF667932.1|CF667932 RTCNT1_33_H11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_33_H11_A029 3', mRNA sequence
Length = 682
Score = 126 bits (270), Expect(3) = 1e-037
Identities = 51/88 (57%), Positives = 65/88 (73%)
Frame = -2 / -1
Query: 370 APIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGL 191
+P S +++L +S+EDTGVGIP +AQ RVF PFMQ S +R +GGTGIGLSIS+ LV L
Sbjct: 514 SPETSQTVNLCVSIEDTGVGIPLNAQERVFVPFMQADSSTSRTYGGTGIGLSISRFLVEL 335
Query: 190 MRGEIGFASKPQVGSTFTFTAVLTRAHS 107
M G + F SKP +GSTF FTAV + H+
Sbjct: 334 MNGRMDFVSKPAIGSTFVFTAVFKKGHT 251
Score = 39.6 bits (80), Expect(3) = 1e-037
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -2 / -1
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
++E ++ FKG+ ALV+D RP+RA VT Y
Sbjct: 220 QSEALTTVFKGMRALVIDGRPIRASVTEY 134
Score = 28.6 bits (56), Expect(3) = 1e-037
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2 / -1
Query: 478 TQSANTLSGYPVANRKRSWENFRV 407
+ S NTLSG + + +WENF++
Sbjct: 637 SSSCNTLSGCEAFDVRSNWENFKL 566
>dbj|BD266974.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 1489
Score = 115 bits (246), Expect(2) = 8e-029
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / +1
Query: 334 SVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQ 155
S EDTG+GIP AQ RVFTPFMQ S +R +GGTGIGLSIS+CL+ LM GEI F S+P
Sbjct: 10 STEDTGIGIPLPAQHRVFTPFMQADSSTSRTYGGTGIGLSISRCLIELMGGEIRFISRPG 189
Query: 154 VGSTFTFTAV 125
+GSTF+FTA+
Sbjct: 190 IGSTFSFTAL 219
Score = 31.3 bits (62), Expect(2) = 8e-029
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2 / +1
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
R + FKG+ ALV+D PV + VT+Y
Sbjct: 265 RGARLPTHFKGMKALVLDGNPVCSLVTKY 351
>gb|CF397914.1|CF397914 RTDS3_23_F01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_23_F01_A022 5', mRNA sequence
Length = 406
Score = 100 bits (212), Expect(2) = 3e-025
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = -2 / +1
Query: 313 GIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTF 134
GIP AQ RVFTPFM S +R +GGTGIGLSIS+CL+ LM GEI F S+P +GSTF+F
Sbjct: 1 GIPLPAQHRVFTPFMHADSSTSRTYGGTGIGLSISRCLIELMGGEIRFISRPGIGSTFSF 180
Query: 133 TAV 125
TA+
Sbjct: 181 TAL 189
Score = 35.0 bits (70), Expect(2) = 3e-025
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2 / +1
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
R + FKG+ ALV+D PVR+ VT+Y
Sbjct: 235 RGARLPTHFKGMKALVLDGNPVRSLVTKY 321
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 295,076,422
Number of Sequences: 355925
Number of extensions: 4444510
Number of successful extensions: 50078
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8195309070
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)