TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 354 2e-097
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 347 3e-095
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 347 5e-095
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 347 5e-095
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 347 5e-095
dbj|BD236020.1| Materials and method for modification of pl... 344 3e-094
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 344 3e-094
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 344 3e-094
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 337 3e-092
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 331 3e-090
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 281 3e-075
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 275 1e-073
gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus ad... 249 1e-065
gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA... 192 3e-049
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 182 2e-045
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 176 1e-043
gb|BE643725.1|BE643725 NXCI_043_H03_F NXCI (Nsf Xylem Compr... 158 3e-038
gb|DR089465.1|DR089465 RTAL1_8_G12.g1_A029 Roots plus added... 157 5e-038
gb|BQ701506.1|BQ701506 NXSI_065_D05_F NXSI (Nsf Xylem Side ... 155 2e-037
gb|BF169757.1|BF169757 NXCI_128_G07_F NXCI (Nsf Xylem Compr... 153 1e-036
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 88 1e-034
gb|DR691891.1|DR691891 EST1081978 Normalized pine embryo li... 144 7e-034
gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side ... 124 6e-028
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 117 5e-026
dbj|BD236018.1| Materials and method for modification of pl... 111 6e-024
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 354 bits (768), Expect = 2e-097
Identities = 141/197 (71%), Positives = 163/197 (82%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDPM EPPL+ A TVLSIL+V YPVDKV CYVSDDGAAMLTFEAL+ET FARKWVPF
Sbjct: 1786 TVDPMKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFV 1965
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK IEPRAPEWYFAQKIDYL++KV P FV+ERRAMKREYEEFKV IN + A ++KVPE
Sbjct: 1966 KKFDIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEE 2145
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G PW GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG +HHKKAG
Sbjct: 2146 GWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFEHHKKAG 2325
Query: 53 ALNALLRTSAILSNAPF 3
A+N+L+R SA+L+N P+
Sbjct: 2326 AMNSLVRVSAVLTNGPY 2376
Score = 195 bits (421), Expect = 2e-049
Identities = 102/184 (55%), Positives = 109/184 (59%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
G L R AE R+N F APAFL S PGLFSRET T++GS P+ S P T IP WS
Sbjct: 2372 GPLVRTAETRTNEFIAPAFLWCSKPGLFSRETYTSRGSSLPSVSSPPL*PKNTCIIPGWS 2193
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP G PS P SGT LA + TLNSSYSLFIA RS T G T S R*SIF
Sbjct: 2192 RVLFPGQGVPSCIIQPSSGTF*ALATRALIRTLNSSYSLFIALRSFTKEGCTLSFR*SIF 2013
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
*AKYHSGA GSI FL GTHF AN DT* +TLSTG* T +DK
Sbjct: 2012 *AKYHSGALGSISNFLTNGTHFLANSEVSERASNVSIAAPSSDT*HETLSTG*STERIDK 1833
Query: 547 TVXA 558
TV A
Sbjct: 1832 TVFA 1821
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 347 bits (753), Expect = 3e-095
Identities = 137/197 (69%), Positives = 161/197 (81%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVDKV CYVSDDGAAMLTFE+L+ET FARKWVPFC
Sbjct: 1033 TVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFESLSETSEFARKWVPFC 1212
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK IEPRAPEWYF+ K+DYL++KV P FV+ERRAMKREYEEFKV IN + A ++KVPE
Sbjct: 1213 KKFNIEPRAPEWYFSLKMDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPEE 1392
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G PW GNN RDH GM+QV G+ MD GN+LP LVYVSREKRPG HHKKAG
Sbjct: 1393 GWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGMDTEGNELPRLVYVSREKRPGFQHHKKAG 1572
Query: 53 ALNALLRTSAILSNAPF 3
A+N+L+R SA+L+N +
Sbjct: 1573 AMNSLVRVSAVLTNGSY 1623
Score = 182 bits (392), Expect = 2e-045
Identities = 93/178 (52%), Positives = 106/178 (59%)
Frame = +1 / -2
Query: 25 AEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPC 204
AE R+N F APAFL PGLFSR+T*T +GS P+ S+ P T IP WS LFP
Sbjct: 1601 AETRTNEFIAPAFLWCWKPGLFSRDT*TRRGSSLPSVSIPPLCPKNTCIIPGWSLVLFPG 1422
Query: 205 HGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHS 384
G PS P SGT A + + TLNSSYSLFIA RS T G T S +*SIF KYHS
Sbjct: 1421 QGVPSCITQPSSGTFWAFATSALIRTLNSSYSLFIALRSFTKVGCTLSFK*SIFSEKYHS 1242
Query: 385 GARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDKTVXA 558
GA GS+L FLQ GTHF AN +T*Q+TLSTG* T +D+TV A
Sbjct: 1241 GALGSMLNFLQNGTHFLANSEVSERDSKVNMAAPSSET*QETLSTG*STDRIDRTVFA 1068
>gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_D11_A029 5', mRNA sequence
Length = 769
Score = 347 bits (751), Expect = 5e-095
Identities = 135/197 (68%), Positives = 163/197 (82%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPLI A TVLSILA YPVD+V CYVSDDGA+MLTF+++TET FARKWVPFC
Sbjct: 140 TVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFC 319
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK+ IEPRAP++YF+QKIDYL++KV P FV+ERRAMKREYEEFKV IN + + ++K P+
Sbjct: 320 KKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDE 499
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G PW GNN RDH GM+QV G+ D GN+LP LVYVSREKRPG+ HHKKAG
Sbjct: 500 GWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQHHKKAG 679
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAPF
Sbjct: 680 AMNALVRVSAVLTNAPF 730
Score = 191 bits (411), Expect = 4e-048
Identities = 101/184 (54%), Positives = 109/184 (59%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R AE R+ AF APAFL PGLFSRET*T +GS FP+ S LP T IP S
Sbjct: 726 GAFVRTAETRTRAFMAPAFLWC*YPGLFSRET*TRRGSSFPSISWAPLLPRNT*IIPG*S 547
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP G PS HP SG F+ TLNSSYS F+ARRS T G T S R*SIF
Sbjct: 546 RVLFPGQGVPSCITHPSSGVF*AFETRAFILTLNSSYSRFMARRSFTKVGCTLSFR*SIF 367
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
* K SGARGSIL FLQKGTHFRAN DT* TLSTG* A +++
Sbjct: 366 *EK*KSGARGSILYFLQKGTHFRANSEVSVIESNVSMDAPSSDT*HDTLSTG*SAARIER 187
Query: 547 TVXA 558
TV A
Sbjct: 186 TVLA 175
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 347 bits (751), Expect = 5e-095
Identities = 135/197 (68%), Positives = 163/197 (82%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPLI A TVLSILA YPVD+V CYVSDDGA+MLTF+++TET FARKWVPFC
Sbjct: 1048 TVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFC 1227
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK+ IEPRAP++YF+QKIDYL++KV P FV+ERRAMKREYEEFKV IN + + ++K P+
Sbjct: 1228 KKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDE 1407
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G PW GNN RDH GM+QV G+ D GN+LP LVYVSREKRPG+ HHKKAG
Sbjct: 1408 GWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQHHKKAG 1587
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAPF
Sbjct: 1588 AMNALVRVSAVLTNAPF 1638
Score = 191 bits (411), Expect = 4e-048
Identities = 101/184 (54%), Positives = 109/184 (59%)
Frame = +1 / -3
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R AE R+ AF APAFL PGLFSRET*T +GS FP+ S LP T IP S
Sbjct: 1634 GAFVRTAETRTRAFMAPAFLWC*YPGLFSRET*TRRGSSFPSISWAPLLPRNT*IIPG*S 1455
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP G PS HP SG F+ TLNSSYS F+ARRS T G T S R*SIF
Sbjct: 1454 RVLFPGQGVPSCITHPSSGVF*AFETRAFILTLNSSYSRFMARRSFTKVGCTLSFR*SIF 1275
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
* K SGARGSIL FLQKGTHFRAN DT* TLSTG* A +++
Sbjct: 1274 *EK*KSGARGSILYFLQKGTHFRANSEVSVIESNVSMDAPSSDT*HDTLSTG*SAARIER 1095
Query: 547 TVXA 558
TV A
Sbjct: 1094 TVLA 1083
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 347 bits (751), Expect = 5e-095
Identities = 135/197 (68%), Positives = 163/197 (82%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPLI A TVLSILA YPVD+V CYVSDDGA+MLTF+++TET FARKWVPFC
Sbjct: 121 TVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFC 300
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK+ IEPRAP++YF+QKIDYL++KV P FV+ERRAMKREYEEFKV IN + + ++K P+
Sbjct: 301 KKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDE 480
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G PW GNN RDH GM+QV G+ D GN+LP LVYVSREKRPG+ HHKKAG
Sbjct: 481 GWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQHHKKAG 660
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAPF
Sbjct: 661 AMNALVRVSAVLTNAPF 711
Score = 191 bits (411), Expect = 4e-048
Identities = 101/184 (54%), Positives = 109/184 (59%)
Frame = +1 / -1
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R AE R+ AF APAFL PGLFSRET*T +GS FP+ S LP T IP S
Sbjct: 707 GAFVRTAETRTRAFMAPAFLWC*YPGLFSRET*TRRGSSFPSISWAPLLPRNT*IIPG*S 528
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP G PS HP SG F+ TLNSSYS F+ARRS T G T S R*SIF
Sbjct: 527 RVLFPGQGVPSCITHPSSGVF*AFETRAFILTLNSSYSRFMARRSFTKVGCTLSFR*SIF 348
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
* K SGARGSIL FLQKGTHFRAN DT* TLSTG* A +++
Sbjct: 347 *EK*KSGARGSILYFLQKGTHFRANSEVSVIESNVSMDAPSSDT*HDTLSTG*SAARIER 168
Query: 547 TVXA 558
TV A
Sbjct: 167 TVLA 156
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 344 bits (746), Expect = 3e-094
Identities = 137/197 (69%), Positives = 161/197 (81%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVD V CYVSDDGA+MLTFE+L+ET FARKWVPFC
Sbjct: 1263 TVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSETSEFARKWVPFC 1442
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK IEPRAPE YF+QKIDYL++K P FV+ERRAMKREYEEFKV IN + A + KVP+
Sbjct: 1443 KKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKERRAMKREYEEFKVRINRLVAKASKVPKE 1622
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW++ +G PW GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG HHKKAG
Sbjct: 1623 GWTMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAG 1802
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAPF
Sbjct: 1803 AMNALVRVSAVLTNAPF 1853
Score = 191 bits (412), Expect = 3e-048
Identities = 100/184 (54%), Positives = 108/184 (58%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+ AF APAFL* PGLFSRET T++GS P+ S P TW IP WS
Sbjct: 1849 GALVSTAETRTKAFMAPAFL*CWKPGLFSRETYTSRGSSLPSVSRPPL*PKNTWIIPGWS 1670
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R L P G PS HP GTL A M TLNSSYSLF+ARRS T G* S R*SIF
Sbjct: 1669 RVLLPGQGVPSCIVHPSLGTLEAFATNRLMRTLNSSYSLFMARRSLTKVG*NLSFR*SIF 1490
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
* K SGARGS+ FLQ GTHF AN +T*Q TLSTG* T +D
Sbjct: 1489 *EK*ISGARGSMSNFLQNGTHFLANSEVSERDSKVSIDAPSSET*QDTLSTG*STERIDN 1310
Query: 547 TVXA 558
TV A
Sbjct: 1309 TVLA 1298
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 344 bits (746), Expect = 3e-094
Identities = 137/197 (69%), Positives = 161/197 (81%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVD V CYVSDDGA+MLTFE+L+ET FARKWVPFC
Sbjct: 1279 TVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSETSEFARKWVPFC 1458
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK IEPRAPE YF+QKIDYL++K P FV+ERRAMKREYEEFKV IN + A + KVP+
Sbjct: 1459 KKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKERRAMKREYEEFKVRINRLVAKASKVPKE 1638
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW++ +G PW GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG HHKKAG
Sbjct: 1639 GWTMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAG 1818
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAPF
Sbjct: 1819 AMNALVRVSAVLTNAPF 1869
Score = 191 bits (412), Expect = 3e-048
Identities = 100/184 (54%), Positives = 108/184 (58%)
Frame = +1 / -1
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+ AF APAFL* PGLFSRET T++GS P+ S P TW IP WS
Sbjct: 1865 GALVSTAETRTKAFMAPAFL*CWKPGLFSRETYTSRGSSLPSVSRPPL*PKNTWIIPGWS 1686
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R L P G PS HP GTL A M TLNSSYSLF+ARRS T G* S R*SIF
Sbjct: 1685 RVLLPGQGVPSCIVHPSLGTLEAFATNRLMRTLNSSYSLFMARRSLTKVG*NLSFR*SIF 1506
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
* K SGARGS+ FLQ GTHF AN +T*Q TLSTG* T +D
Sbjct: 1505 *EK*ISGARGSMSNFLQNGTHFLANSEVSERDSKVSIDAPSSET*QDTLSTG*STERIDN 1326
Query: 547 TVXA 558
TV A
Sbjct: 1325 TVLA 1314
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 344 bits (746), Expect = 3e-094
Identities = 137/197 (69%), Positives = 161/197 (81%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVD V CYVSDDGA+MLTFE+L+ET FARKWVPFC
Sbjct: 1269 TVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSETSEFARKWVPFC 1448
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK IEPRAPE YF+QKIDYL++K P FV+ERRAMKREYEEFKV IN + A + KVP+
Sbjct: 1449 KKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKERRAMKREYEEFKVRINRLVAKASKVPKE 1628
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW++ +G PW GNN RDH GM+QV G+ +D GN+LP LVYVSREKRPG HHKKAG
Sbjct: 1629 GWTMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAG 1808
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAPF
Sbjct: 1809 AMNALVRVSAVLTNAPF 1859
Score = 191 bits (412), Expect = 3e-048
Identities = 100/184 (54%), Positives = 108/184 (58%)
Frame = +1 / -2
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GAL AE R+ AF APAFL* PGLFSRET T++GS P+ S P TW IP WS
Sbjct: 1855 GALVSTAETRTKAFMAPAFL*CWKPGLFSRETYTSRGSSLPSVSRPPL*PKNTWIIPGWS 1676
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R L P G PS HP GTL A M TLNSSYSLF+ARRS T G* S R*SIF
Sbjct: 1675 RVLLPGQGVPSCIVHPSLGTLEAFATNRLMRTLNSSYSLFMARRSLTKVG*NLSFR*SIF 1496
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
* K SGARGS+ FLQ GTHF AN +T*Q TLSTG* T +D
Sbjct: 1495 *EK*ISGARGSMSNFLQNGTHFLANSEVSERDSKVSIDAPSSET*QDTLSTG*STERIDN 1316
Query: 547 TVXA 558
TV A
Sbjct: 1315 TVLA 1304
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 337 bits (731), Expect = 3e-092
Identities = 132/197 (67%), Positives = 159/197 (80%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSILAV YPV+KV CYVSDDGAAMLTFE ++ET FARKWVPFC
Sbjct: 826 TVDPLKEPPLVTANTVLSILAVDYPVEKVSCYVSDDGAAMLTFETMSETAEFARKWVPFC 1005
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
K IEPRAPE+YF+ K+DYL++KV P FV+ERRAMKREYEE+KV IN + A ++K P+
Sbjct: 1006 KNFNIEPRAPEFYFSLKVDYLKDKVQPNFVKERRAMKREYEEYKVRINALVAKAQKTPDE 1185
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G W GNN RDH GM+QV G+ D GN+LP LVYVSREKRPG+ HHKKAG
Sbjct: 1186 GWIMQDGTAWPGNNTRDHPGMIQVFLGHTGAHDVEGNELPRLVYVSREKRPGYQHHKKAG 1365
Query: 53 ALNALLRTSAILSNAPF 3
A+NAL+R SA+L+NAP+
Sbjct: 1366 AMNALVRVSAVLTNAPY 1416
Score = 183 bits (395), Expect = 7e-046
Identities = 97/184 (52%), Positives = 110/184 (59%)
Frame = +1 / -3
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA AE R+NAF APAFL PG FSRET*T++GS FP++S P T IP S
Sbjct: 1412 GAFVSTAETRTNAFMAPAFLWC*YPGRFSRET*TSRGSSFPSTSCAPVCPKNT*IIPG*S 1233
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP PS HP SG LA + + TL SSYSLFIARRS T G T S +*S F
Sbjct: 1232 RVLFPGQAVPSCMIHPSSGVF*ALATSALILTLYSSYSLFIARRSLTKLGCTLSFK*STF 1053
Query: 367 *AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDK 546
K +SGARGS+L FLQKGTHF AN +T*Q+T STG* TA MD+
Sbjct: 1052 REK*NSGARGSMLKFLQKGTHFLANSAVSDMVSNVSMAAPSSET*QETFSTG*STARMDR 873
Query: 547 TVXA 558
TV A
Sbjct: 872 TVLA 861
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 331 bits (717), Expect = 3e-090
Identities = 132/188 (70%), Positives = 153/188 (81%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVDKV CYVSDDGAAMLTFE+L+ET FARKWVPFC
Sbjct: 99 TVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFESLSETSEFARKWVPFC 278
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK IEPRAPEWYF+ K+DYL++KV P FV+ERRAMKREYEEFKV IN + A ++KVPE
Sbjct: 279 KKFNIEPRAPEWYFSLKMDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPEE 458
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHHKKAG 54
GW + +G W GNN RDH GM+QV G+ MD GN+LP LVYVSREKRPG HHKKAG
Sbjct: 459 GWVMQDGTLWPGNNTRDHPGMIQVFLGHSGGMDTEGNELPRLVYVSREKRPGFQHHKKAG 638
Query: 53 ALNALLRT 30
A+N+L+ T
Sbjct: 639 AMNSLVYT 662
Score = 175 bits (377), Expect = 2e-043
Identities = 90/179 (50%), Positives = 106/179 (59%)
Frame = +1 / -1
Query: 22 IAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFP 201
+++V +N F APAFL PGLFSR+T*T +GS P+ S+ P T IP WS LFP
Sbjct: 670 VSKVYTNEFIAPAFLWCWKPGLFSRDT*TRRGSSLPSVSIPPLCPKNTCIIPGWSLVLFP 491
Query: 202 CHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYH 381
PS P SGT A + + TLNSSYSLFIA RS T G T S +*SIF KYH
Sbjct: 490 GQRVPSCITQPSSGTFWAFATSALIRTLNSSYSLFIALRSFTKVGCTLSFK*SIFSEKYH 311
Query: 382 SGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTLSTG*XTASMDKTVXA 558
SGA GS+L FLQ GTHF AN +T*Q+TLSTG* T +D+TV A
Sbjct: 310 SGALGSMLNFLQNGTHFLANSEVSERDSKVNMAAPSSET*QETLSTG*STDRIDRTVFA 134
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 281 bits (608), Expect = 3e-075
Identities = 107/162 (66%), Positives = 134/162 (82%)
Frame = -1 / +2
Query: 488 DGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRA 309
+GA+MLTF+++TET FARKWVPFCKK+ IEPRAP++YF+QKIDYL++KV P FV+ERRA
Sbjct: 5 EGASMLTFDSMTETSEFARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRA 184
Query: 308 MKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDA 129
MKREYEEFKV IN + + ++K P+ GW + +G PW GNN RDH GM+QV G+ D
Sbjct: 185 MKREYEEFKVRINALVSKAQKTPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIE 364
Query: 128 GNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
GN+LP LVYVSREKRPG+ HHKKAGA+NAL+R SA+L+NAPF
Sbjct: 365 GNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPF 490
Score = 170 bits (365), Expect = 1e-041
Identities = 88/145 (60%), Positives = 93/145 (64%)
Frame = +1 / -3
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R AE R+ AF APAFL PGLFSRET*T +GS FP+ S LP T IP S
Sbjct: 486 GAFVRTAETRTRAFMAPAFLWC*YPGLFSRET*TRRGSSFPSISWAPLLPRNT*IIPG*S 307
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP G PS HP SG F+ TLNSSYS F+ARRS T G T S R*SIF
Sbjct: 306 RVLFPGQGVPSCITHPSSGVF*AFETRAFILTLNSSYSRFMARRSFTKVGCTLSFR*SIF 127
Query: 367 *AKYHSGARGSILCFLQKGTHFRAN 441
* K SGARGSIL FLQKGTHFRAN
Sbjct: 126 *EK*KSGARGSILYFLQKGTHFRAN 52
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 275 bits (596), Expect = 1e-073
Identities = 107/147 (72%), Positives = 123/147 (83%)
Frame = -1 / -1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSILAV YPVDKV CYVSDDGAAMLTFE L+ET FARKWVPFC
Sbjct: 443 TVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFETLSETSEFARKWVPFC 264
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEG 234
KK+ IEPRAPE+YFAQKIDYL++KV P FV+ERRAMKREYEE+K+ IN + A + KVPE
Sbjct: 263 KKYSIEPRAPEFYFAQKIDYLKDKVQPSFVKERRAMKREYEEYKIRINALVAKAXKVPEE 84
Query: 233 GWSLPEGAPWHGNNVRDHAGMVQVITG 153
GW++ +G PW GNN RDH GM+QV G
Sbjct: 83 GWTMQDGTPWPGNNTRDHPGMIQVFLG 3
Score = 144 bits (310), Expect = 4e-034
Identities = 72/135 (53%), Positives = 79/135 (58%)
Frame = +1 / +1
Query: 154 PVMTWTIPAWSRTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNS 333
P TW IP WSR L P HG PS HP SGT LA + L SSYSLFIA RS T
Sbjct: 4 PKNTWIIPGWSRVLLPGHGVPSCMVHPSSGTXCALATRALIRILYSSYSLFIALRSLTKE 183
Query: 334 G*TFSLR*SIF*AKYHSGARGSILCFLQKGTHFRANRHXXXXXXXXXXXXXXXDT*QQTL 513
G T S +*SIF AK +SGA GSIL FLQ GTHF AN +T* +TL
Sbjct: 184 GCTLSFK*SIFWAK*NSGALGSILYFLQNGTHFLANSEVSERVSKVNIAAPSSET*HETL 363
Query: 514 STG*XTASMDKTVXA 558
STG* TA +D+TV A
Sbjct: 364 STG*STARIDRTVFA 408
>gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_A02_A029 5', mRNA sequence
Length = 741
Score = 249 bits (539), Expect = 1e-065
Identities = 94/142 (66%), Positives = 116/142 (81%)
Frame = -1 / +3
Query: 428 WVPFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSR 249
WVPFCKK+ IEPRAP++YF+QKIDYL++KV P FV+ERRAMKREYEEFKV IN + + ++
Sbjct: 3 WVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQ 182
Query: 248 KVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDH 69
K P+ GW + +G PW GNN RDH GM+QV G+ D GN+LP LVYVSREKRPG+ H
Sbjct: 183 KTPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQH 362
Query: 68 HKKAGALNALLRTSAILSNAPF 3
HKKAGA+NAL+R SA+L+NAPF
Sbjct: 363 HKKAGAMNALVRVSAVLTNAPF 428
Score = 159 bits (341), Expect = 2e-038
Identities = 83/141 (58%), Positives = 89/141 (63%)
Frame = +1 / -3
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R AE R+ AF APAFL PGLFSRET*T +GS FP+ S LP T IP S
Sbjct: 424 GAFVRTAETRTRAFMAPAFLWC*YPGLFSRET*TRRGSSFPSISWAPLLPRNT*IIPG*S 245
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF 366
R LFP G PS HP SG F+ TLNSSYS F+ARRS T G T S R*SIF
Sbjct: 244 RVLFPGQGVPSCITHPSSGVF*AFETRAFILTLNSSYSRFMARRSFTKVGCTLSFR*SIF 65
Query: 367 *AKYHSGARGSILCFLQKGTH 429
* K SGARGS+L FLQKGTH
Sbjct: 64 *EK*KSGARGSMLYFLQKGTH 2
>gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA clone 2C7G, mRNA sequence
Length = 537
Score = 192 bits (414), Expect(2) = 3e-049
Identities = 78/105 (74%), Positives = 88/105 (83%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVD V CYVSDDGA+MLTFE+L+ET FARKWVPFC
Sbjct: 42 TVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSETSEFARKWVPFC 221
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKV 279
KK IEPRAPE YF+QKIDYL++K P FV+ RRAMK YEEFKV
Sbjct: 222 KKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKXRRAMKXXYEEFKV 356
Score = 22.6 bits (43), Expect(2) = 3e-049
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1 / +2
Query: 275 INTVAANSRKVPEGGWS 225
IN + A + K+P+ GW+
Sbjct: 359 INRLVAKALKLPKEGWT 409
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 182 bits (391), Expect = 2e-045
Identities = 70/109 (64%), Positives = 86/109 (78%)
Frame = -1 / +1
Query: 329 FVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGN 150
FV+ERRAMKREYEEFKV IN + + ++K P+ GW + +G PW GNN RDH GM+QV G+
Sbjct: 13 FVKERRAMKREYEEFKVRINALVSKAQKTPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGS 192
Query: 149 DCVMDDAGNKLPWLVYVSREKRPGHDHHKKAGALNALLRTSAILSNAPF 3
D GN+LP LVYVSREKRPG+ HHKKAGA+NAL+R SA+L+NAPF
Sbjct: 193 SGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPF 339
Score = 113 bits (241), Expect = 1e-024
Identities = 59/107 (55%), Positives = 64/107 (59%)
Frame = +1 / -3
Query: 7 GALERIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWS 186
GA R AE R+ AF APAFL PGLFSRET*T +GS FP+ S LP T IP S
Sbjct: 335 GAFVRTAETRTRAFMAPAFLWC*YPGLFSRET*TRRGSSFPSISWAPLLPRNT*IIPG*S 156
Query: 187 RTLFPCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRT 327
R LFP G PS HP SG F+ TLNSSYS F+ARRS T
Sbjct: 155 RVLFPGQGVPSCITHPSSGVF*AFETRAFILTLNSSYSRFMARRSFT 15
>gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV116_D12 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 685
Score = 176 bits (379), Expect = 1e-043
Identities = 71/105 (67%), Positives = 83/105 (79%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPLI A TVLSILA YPVD+V CYVSDDGA+MLTF+++TET FARKWVPFC
Sbjct: 351 TVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFC 530
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKV 279
KK+ IEPRAP++YF+QKIDYL++ P FV RA KR F V
Sbjct: 531 KKYSIEPRAPDFYFSQKIDYLKDXXQPTFVXXXRAXKRXXXXFXV 665
>gb|BE643725.1|BE643725 NXCI_043_H03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_043_H03 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 323
Score = 158 bits (340), Expect = 3e-038
Identities = 61/107 (57%), Positives = 78/107 (72%)
Frame = -1 / +2
Query: 386 PEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVAANSRKVPEGGWSLPEGAP 207
P++YF+QKIDYL++KV P FV+ERRAMKREYEEFKV IN + + ++K P+ W + +G P
Sbjct: 2 PDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDXXWVMQDGTP 181
Query: 206 WHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRPGHDHH 66
GNN RDH GM+ G+ D GN+LP LVYVSREKRPG+ H
Sbjct: 182 XPGNNTRDHPGMIXXFLGSSGAHDIEGNELPRLVYVSREKRPGYXXH 322
Score = 103 bits (220), Expect = 1e-021
Identities = 56/103 (54%), Positives = 60/103 (58%)
Frame = +1 / -3
Query: 79 PGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLFPCHGAPSGRDHPPSGTLREL 258
PGLFSRET*T +GS FP+ S LP IP SR LFP G PS H SG
Sbjct: 309 PGLFSRET*TRRGSSFPSISWAPLLPRNXXIIPG*SRVLFPGXGVPSCITHXSSGVF*AF 130
Query: 259 AATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKYHSG 387
F+ TLNSSYS F+ARRS T G T S R*SIF* K SG
Sbjct: 129 ETRAFILTLNSSYSRFMARRSFTKVGCTLSFR*SIF*EK*KSG 1
>gb|DR089465.1|DR089465 RTAL1_8_G12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_8_G12_A029 5', mRNA sequence
Length = 560
Score = 157 bits (338), Expect = 5e-038
Identities = 71/146 (48%), Positives = 91/146 (62%)
Frame = -1 / +1
Query: 440 FARKWVPFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYEEFKVHINTVA 261
F RKWV FCKK+ IE R E+YF KIDYL++KV FV+E R MKREYEE+K+ IN
Sbjct: 13 FVRKWVLFCKKYSIEFRGLEFYFV*KIDYLKDKV*FFFVKEWRVMKREYEEYKIWINVFV 192
Query: 260 ANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWLVYVSREKRP 81
KV E GW + +G W GNN+ D+ GM+ V G +D+ GN+L WLVYV EKR
Sbjct: 193 VKV*KVLEEGWIM*DGILWLGNNI*DYLGMI*VFLGYSGGVDNDGNELLWLVYVFCEKRF 372
Query: 80 GHDHHKKAGALNALLRTSAILSNAPF 3
G ++KK G +N L+ + N F
Sbjct: 373 GF*YYKKVGVMNVLV*VXVVFINGLF 450
Score = 101 bits (216), Expect = 3e-021
Identities = 60/141 (42%), Positives = 70/141 (49%)
Frame = +1 / -1
Query: 19 RIAEVRSNAFKAPAFL**SCPGLFSRET*TNQGSLFPASSMTQSLPVMTWTIPAWSRTLF 198
+ ++N F P FL* P LFS+ T*TN + P+ S P T IP S+ L
Sbjct: 434 KTTXTQTNTFITPTFL*Y*KPNLFSQNT*TNHNNSLPSLSTPPL*PKNT*IIPK*SQILL 255
Query: 199 PCHGAPSGRDHPPSGTLRELAATVFM*TLNSSYSLFIARRSRTNSG*TFSLR*SIF*AKY 378
P H PS HP S T L + L SSYSLFI S T T S +*SIF* K
Sbjct: 254 PNHKIPSYIIHPSSNTFYTLTTKTLIQILYSSYSLFITLHSLTKKNYTLSFK*SIF*TK* 75
Query: 379 HSGARGSILCFLQKGTHFRAN 441
+S SIL FLQ THF N
Sbjct: 74 NSKPLNSILYFLQNNTHFLTN 12
>gb|BQ701506.1|BQ701506 NXSI_065_D05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_065_D05 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 273
Score = 155 bits (334), Expect = 2e-037
Identities = 59/89 (66%), Positives = 72/89 (80%)
Frame = -1 / +3
Query: 503 CYVSDDGAAMLTFEALTETCLFARKWVPFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFV 324
CYVSDDGAAMLTFE ++ET FARKWVPFCK IEPRAPE+YF+ K+DYL++K P FV
Sbjct: 6 CYVSDDGAAMLTFETMSETAEFARKWVPFCKNFNIEPRAPEFYFSLKVDYLKDKXQPNFV 185
Query: 323 RERRAMKREYEEFKVHINTVAANSRKVPE 237
+ERRAMKREYEE+KV + A ++K P+
Sbjct: 186 KERRAMKREYEEYKVXXXALVAKAQKTPD 272
>gb|BF169757.1|BF169757 NXCI_128_G07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_128_G07 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 345
Score = 153 bits (328), Expect = 1e-036
Identities = 63/90 (70%), Positives = 70/90 (77%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPL+ A TVLSIL+V YPVD V CYVSDDGA MLTFE+L+ET FARKWVPFC
Sbjct: 76 TVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGAXMLTFESLSETSEFARKWVPFC 255
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFV 324
KK I RAPE YF+ IDYL+ K P FV
Sbjct: 256 KKXXIXXRAPEIYFSXXIDYLKXKFQPXFV 345
>gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA clone 3C11G, mRNA sequence
Length = 718
Score = 88.1 bits (186), Expect(3) = 1e-034
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = -1 / +1
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFE 462
TVDP+ EPPL+ A TVLSILAV YPV+KV CYVSDDGAAMLTFE
Sbjct: 313 TVDPLKEPPLVTANTVLSILAVDYPVEKVSCYVSDDGAAMLTFE 444
Score = 71.6 bits (150), Expect(3) = 1e-034
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = -1 / +2
Query: 422 PFCKKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMKREYE 291
PFCK I PR PE+YF+ K+DYL+ KVHP FV+ERR ++E
Sbjct: 482 PFCKNFNIXPRXPEFYFSLKVDYLKXKVHPNFVKERRXXNXKFE 613
Score = 24.4 bits (47), Expect(3) = 1e-034
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 458 LTETCLFARKWV 423
++ET FARKWV
Sbjct: 447 MSETAXFARKWV 482
>gb|DR691891.1|DR691891 EST1081978 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF24 3' end, mRNA sequence
Length = 788
Score = 144 bits (308), Expect = 7e-034
Identities = 54/97 (55%), Positives = 71/97 (73%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
T DP EPPL+ A T+LSIL+ YPV+K+ CYVSDDG A+LTFEA+ E FA WVPFC
Sbjct: 482 TADPEKEPPLVTANTILSILSADYPVEKLACYVSDDGGALLTFEAMAEAASFADIWVPFC 661
Query: 413 KKHKIEPRAPEWYFAQKIDYLREKVHPEFVRERRAMK 303
+KH IEPR P+ YF+ D + K+ P+FV++RR ++
Sbjct: 662 RKHNIEPRNPDTYFSSTRDPTKNKLRPDFVKDRRRVR 772
>gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_083_G10 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 261
Score = 124 bits (265), Expect = 6e-028
Identities = 48/84 (57%), Positives = 60/84 (71%)
Frame = -1 / +2
Query: 287 FKVHINTVAANSRKVPEGGWSLPEGAPWHGNNVRDHAGMVQVITGNDCVMDDAGNKLPWL 108
FKV IN + A + KVP+ GW++ +G PW GNN RDH GM+QV G+ +D GN+LP L
Sbjct: 2 FKVRINRLVAKASKVPKEGWTMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRL 181
Query: 107 VYVSREKRPGHDHHKKAGALNALL 36
VYVSREKRPG HK GA+NAL+
Sbjct: 182 VYVSREKRPGFXXHKXXGAMNALV 253
>gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV101_G08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 566
Score = 117 bits (251), Expect = 5e-026
Identities = 48/69 (69%), Positives = 54/69 (78%)
Frame = -1 / +3
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
TVDP+ EPPLI A TVLSILA YPVD+V CYVSDDGA+MLTF+++TET A KWVPFC
Sbjct: 351 TVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSXXAXKWVPFC 530
Query: 413 KKHKIEPRA 387
K E RA
Sbjct: 531 KXXXXEXRA 557
>dbj|BD236018.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 669
Score = 111 bits (236), Expect = 6e-024
Identities = 44/75 (58%), Positives = 52/75 (69%)
Frame = -1 / +2
Query: 593 TVDPMXEPPLIIAXTVLSILAVXYPVDKVCCYVSDDGAAMLTFEALTETCLFARKWVPFC 414
T DP EPPL + TVLS LAV YP+ K+ CYVSDDG + LTF AL E FA+ W+PFC
Sbjct: 293 TADPFKEPPLTVINTVLSALAVHYPMGKLSCYVSDDGGSPLTFYALLEASRFAKIWIPFC 472
Query: 413 KKHKIEPRAPEWYFA 369
K+ IE R PE YF+
Sbjct: 473 DKYSIEDRCPEVYFS 517
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 316,962,703
Number of Sequences: 355925
Number of extensions: 4538638
Number of successful extensions: 48454
Number of sequences better than 1.0e-020: 35
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7923941220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)