TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCM12h10.yg.2.1
         (339 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO159016.1|CO159016  FLD1_10_F07.g1_A029 Root flooded Pin...   143   4e-034
gb|BG317521.1|BG317521  NXPV_002_G06_F NXPV (Nsf Xylem Plani...   142   8e-034
gb|BQ696956.1|BQ696956  NXPV_047_C11_F NXPV (Nsf Xylem Plani...   134   2e-031

>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_10_F07_A029 5', mRNA sequence
          Length = 796

 Score =  143 bits (307), Expect = 4e-034
 Identities = 56/111 (50%), Positives = 73/111 (65%)
 Frame = -3 / +3

                                                                       
Query: 334 SSVXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELG 155
           ++V  TFS+GTK+      +LHGGAKYR T RGFVV H  FAENY  Y+R HF+K +EL 
Sbjct: 60  AAVFFTFSLGTKTHYYGRTLLHGGAKYRGTGRGFVVFHAKFAENYRFYSRSHFVKGLELM 239

                                                              
Query: 154 IILTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDWLKTV 2
           ++L VY  +S   + T+ YI    S WF+V +W+ APF F  SGF+W K V
Sbjct: 240 LLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLFAPFLFNPSGFEWQKIV 392



>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_002_G06 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 421

 Score =  142 bits (305), Expect = 8e-034
 Identities = 55/109 (50%), Positives = 72/109 (66%)
 Frame = -3 / +1

                                                                       
Query: 328 VXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELGII 149
           V  TFS+GTK+      +LHGGAKYRAT RGFVV H  FA+NY  Y+R HF+K +EL ++
Sbjct: 1   VFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFADNYRFYSRSHFVKGLELMLL 180

                                                            
Query: 148 LTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDWLKTV 2
           L VY  +    +NT+ Y+    S WF+V +W+ APF F  SGF+W K V
Sbjct: 181 LIVYNVYGQPYRNTIAYLLITFSMWFMVGTWLFAPFLFNPSGFEWQKIV 327



>gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_047_C11 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 601

 Score =  134 bits (287), Expect = 2e-031
 Identities = 54/100 (54%), Positives = 70/100 (70%)
 Frame = -3 / +2

                                                                       
Query: 334 SSVXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELG 155
           +SV  TFS+GTK+      ILHGGAKYRAT RGFVV+H+ +AENY LY+R HF K +EL 
Sbjct: 263 ASVFFTFSLGTKTHYFGRTILHGGAKYRATGRGFVVRHEKYAENYRLYSRSHFTKGLELM 442

                                                   
Query: 154 IILTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAF 35
           ++L VY  +   AK+ + Y+    S WFLVV+W+ APF F
Sbjct: 443 MLLFVYNIYCSAAKDFVSYLLITLSMWFLVVTWLFAPFLF 562



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 152,436,304
Number of Sequences: 355925
Number of extensions: 1608385
Number of successful extensions: 61866
Number of sequences better than 1.0e-020: 5
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3464081460
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)