TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCL28h07.yg.2.1
         (277 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO159016.1|CO159016  FLD1_10_F07.g1_A029 Root flooded Pin...   170   2e-042
gb|BG317521.1|BG317521  NXPV_002_G06_F NXPV (Nsf Xylem Plani...   164   2e-040
gb|BQ696956.1|BQ696956  NXPV_047_C11_F NXPV (Nsf Xylem Plani...   156   4e-038
gb|DR388038.1|DR388038  RTHG1_25_F10.g1_A029 Roots plus adde...   124   1e-028

>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_10_F07_A029 5', mRNA sequence
          Length = 796

 Score =  170 bits (366), Expect = 2e-042
 Identities = 66/84 (78%), Positives = 77/84 (91%)
 Frame = -1 / +3

                                                                       
Query: 256 VLMQLQLASVFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHF 77
           V+MQLQ+A+VFFTFSLGTKTHYYG TLLHGGA+YR TGRGFVVFHAKFAENYR YSRSHF
Sbjct: 39  VIMQLQMAAVFFTFSLGTKTHYYGRTLLHGGAKYRGTGRGFVVFHAKFAENYRFYSRSHF 218

                                   
Query: 76  VKGIELMILLIVYEIFGQSYRGAI 5
           VKG+ELM+LLIVY ++ Q++R  +
Sbjct: 219 VKGLELMLLLIVYTVYSQAHRKTV 290



>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_002_G06 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 421

 Score =  164 bits (352), Expect = 2e-040
 Identities = 64/76 (84%), Positives = 70/76 (92%)
 Frame = -1 / +1

                                                                       
Query: 229 VFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGIELMIL 50
           VFFTFSLGTKTHYYG TLLHGGA+YRATGRGFVVFHAKFA+NYR YSRSHFVKG+ELM+L
Sbjct: 1   VFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFADNYRFYSRSHFVKGLELMLL 180

                           
Query: 49  LIVYEIFGQSYRGAIA 2
           LIVY ++GQ YR  IA
Sbjct: 181 LIVYNVYGQPYRNTIA 228



>gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_047_C11 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 601

 Score =  156 bits (335), Expect = 4e-038
 Identities = 62/76 (81%), Positives = 70/76 (92%)
 Frame = -1 / +2

                                                                       
Query: 256 VLMQLQLASVFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHF 77
           V+MQLQLASVFFTFSLGTKTHY+G T+LHGGA+YRATGRGFVV H K+AENYRLYSRSHF
Sbjct: 242 VIMQLQLASVFFTFSLGTKTHYFGRTILHGGAKYRATGRGFVVRHEKYAENYRLYSRSHF 421

                           
Query: 76  VKGIELMILLIVYEIF 29
            KG+ELM+LL VY I+
Sbjct: 422 TKGLELMMLLFVYNIY 469



>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_25_F10_A029 5', mRNA sequence
          Length = 753

 Score =  124 bits (266), Expect = 1e-028
 Identities = 48/59 (81%), Positives = 54/59 (91%)
 Frame = -1 / +1

                                                                      
Query: 250 MQLQLASVFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFV 74
           MQLQL S+FFTFSLGT+THY+G T+LHGGA Y+ATGRGFVV H KFA+NYRLYSRSHFV
Sbjct: 577 MQLQLCSIFFTFSLGTRTHYFGRTILHGGAXYKATGRGFVVQHIKFADNYRLYSRSHFV 753



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 145,637,384
Number of Sequences: 355925
Number of extensions: 1754059
Number of successful extensions: 138639
Number of sequences better than 1.0e-020: 7
length of database: 72,425,745
effective HSP length: 48
effective length of database: 55,341,345
effective search space used: 2379677835
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)