TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 162 5e-040
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 162 5e-040
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 162 5e-040
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 162 5e-040
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 156 3e-038
gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip libra... 151 1e-036
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 148 9e-036
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 148 1e-035
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 148 1e-035
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 148 1e-035
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 148 1e-035
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 148 1e-035
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 148 1e-035
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 148 1e-035
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 147 2e-035
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 145 9e-035
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 142 6e-034
dbj|BD236020.1| Materials and method for modification of pl... 140 2e-033
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 140 2e-033
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 140 2e-033
gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciat... 80 2e-033
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 80 3e-033
gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Ve... 140 3e-033
gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Ver... 140 3e-033
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 80 3e-033
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 80 1e-032
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 80 1e-032
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 76 3e-031
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 76 6e-031
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 82 9e-031
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 131 1e-030
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 82 1e-030
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 82 1e-030
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 82 2e-030
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 82 2e-030
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 82 2e-030
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 82 2e-030
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 82 2e-030
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 82 2e-030
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 129 6e-030
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 79 1e-029
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 76 1e-029
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 76 6e-029
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 123 4e-028
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 122 5e-028
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 122 9e-028
gb|BX679126.1|BX679126 BX679126 RS Pinus pinaster cDNA clon... 115 2e-027
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 76 2e-027
gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciat... 82 5e-027
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 117 2e-026
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 67 1e-025
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 112 5e-025
gb|BQ696934.1|BQ696934 NXPV_047_A09_F NXPV (Nsf Xylem Plani... 69 1e-024
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 69 1e-024
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 69 2e-024
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 109 7e-024
gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iro... 109 7e-024
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 73 1e-023
gb|BE209216.1|BE209216 NXNV_147_D10_F Nsf Xylem Normal wood... 73 1e-022
gb|BG832804.1|BG832804 NXPV_080_B12_F NXPV (Nsf Xylem Plani... 63 2e-022
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 76 5e-022
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 100 2e-021
gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Ve... 82 3e-021
gb|CD028231.1|CD028231 NXNV003H02 Nsf Xylem Normal wood Ver... 82 3e-021
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 100 5e-021
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 100 5e-021
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 69 6e-021
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 162 bits (349), Expect = 5e-040
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK +AGVDT+FTVTSK GDD++FSELY FKW
Sbjct: 151 QFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTL 330
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N IGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 331 LIVNLIGVVAGVSNAINNGYESWGPLFGKLFF 426
Score = 124 bits (265), Expect = 4e-028
Identities = 50/93 (53%), Positives = 56/93 (60%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP +A PATTP++F VHLN SP D
Sbjct: 428 AKKSFPNRGPHDSYPLLMALDTPATTPIRFTISSVVGGINRVVHLNAYSSEKSSSSPAFD 249
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVK VSTPA ++PW TA +C DTPP QNC
Sbjct: 248 VTVKFVSTPARTFNNPWKTANKCADTPPITQNC 150
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 162 bits (349), Expect = 5e-040
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK +AGVDT+FTVTSK GDD++FSELY FKW
Sbjct: 246 QFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTL 425
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N IGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 426 LIVNLIGVVAGVSNAINNGYESWGPLFGKLFF 521
Score = 124 bits (265), Expect = 4e-028
Identities = 50/93 (53%), Positives = 56/93 (60%)
Frame = -1 / -2
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP +A PATTP++F VHLN SP D
Sbjct: 523 AKKSFPNRGPHDSYPLLMALDTPATTPIRFTISSVVGGINRVVHLNAYSSEKSSSSPAFD 344
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVK VSTPA ++PW TA +C DTPP QNC
Sbjct: 343 VTVKFVSTPARTFNNPWKTANKCADTPPITQNC 245
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 162 bits (349), Expect = 5e-040
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK +AGVDT+FTVTSK GDD++FSELY FKW
Sbjct: 159 QFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTL 338
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N IGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 339 LIVNLIGVVAGVSNAINNGYESWGPLFGKLFF 434
Score = 124 bits (265), Expect = 4e-028
Identities = 50/93 (53%), Positives = 56/93 (60%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP +A PATTP++F VHLN SP D
Sbjct: 436 AKKSFPNRGPHDSYPLLMALDTPATTPIRFTISSVVGGINRVVHLNAYSSEKSSSSPAFD 257
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVK VSTPA ++PW TA +C DTPP QNC
Sbjct: 256 VTVKFVSTPARTFNNPWKTANKCADTPPITQNC 158
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 162 bits (349), Expect = 5e-040
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK +AGVDT+FTVTSK GDD++FSELY FKW
Sbjct: 254 QFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTL 433
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N IGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 434 LIVNLIGVVAGVSNAINNGYESWGPLFGKLFF 529
Score = 124 bits (265), Expect = 4e-028
Identities = 50/93 (53%), Positives = 56/93 (60%)
Frame = -1 / -2
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP +A PATTP++F VHLN SP D
Sbjct: 531 AKKSFPNRGPHDSYPLLMALDTPATTPIRFTISSVVGGINRVVHLNAYSSEKSSSSPAFD 352
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVK VSTPA ++PW TA +C DTPP QNC
Sbjct: 351 VTVKFVSTPARTFNNPWKTANKCADTPPITQNC 253
>gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B11 similar to Cellulose synthase, mRNA
sequence
Length = 540
Score = 156 bits (336), Expect = 3e-038
Identities = 63/92 (68%), Positives = 70/92 (76%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFA+FQGLLK +AGVDT+FTVTSKGGDD EFSELY FKW
Sbjct: 88 QFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKGGDDGEFSELYLFKWTNLLIPPTTL 267
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N IGVVAG+ +AI GY SWGPLFGK+FF
Sbjct: 268 LVINIIGVVAGVSDAINNGYASWGPLFGKMFF 363
>gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST26D09, mRNA sequence
Length = 569
Score = 151 bits (324), Expect = 1e-036
Identities = 61/87 (70%), Positives = 67/87 (77%)
Frame = +3 / +2
Query: 24 GGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNF 203
GGVS+HLFAVFQGLLK +AGVDT+FTVTSK GDD++FSELY FKW N
Sbjct: 17 GGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTLLIVNL 196
Query: 204 IGVVAGIXNAIXXGYESWGPLFGKLFF 284
IGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 197 IGVVAGVSNAINNGYESWGPLFGKLFF 277
Score = 115 bits (246), Expect = 2e-025
Identities = 48/88 (54%), Positives = 54/88 (61%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP +A PATTP++F VHLN SP D
Sbjct: 279 AKKSFPNRGPHDSYPLLMAXDTPATTPIRFTISSVVGGINRVVHLNAYSSEKSSSSPAFD 100
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPP 23
VTVK VSTPA ++PW TA +C DTPP
Sbjct: 99 VTVKFVSTPARTFNNPWKTANKCADTPP 16
>gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_F10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 493
Score = 148 bits (318), Expect = 9e-036
Identities = 57/92 (61%), Positives = 67/92 (72%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 110 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIXPTTL 289
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 290 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 385
>gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026B12, mRNA sequence
Length = 685
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 307 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 486
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 487 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 582
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 256 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 435
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 436 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 531
>gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_A10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 518
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 110 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 289
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 290 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 385
>gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_1_A02_A029 5', mRNA sequence
Length = 662
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 139 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 318
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 319 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 414
>gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_F09_A029 5', mRNA sequence
Length = 802
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 525 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 704
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 705 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 800
>gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H07_A029 5', mRNA sequence
Length = 853
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 548 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 727
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 728 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 823
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 148 bits (317), Expect = 1e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 2509 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 2688
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 2689 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 2784
>gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRNA, partial cds
Length = 1333
Score = 147 bits (316), Expect = 2e-035
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 526 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLPIPPTTL 705
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKLFF
Sbjct: 706 LVINLVGIVAGFSDALNNGYQSWGPLFGKLFF 801
>gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_016_G11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 393
Score = 145 bits (311), Expect = 9e-035
Identities = 55/92 (59%), Positives = 65/92 (70%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 43 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 222
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+VAG +A+ GY+SWGPLFGKL F
Sbjct: 223 LVINLVGIVAGFSDALNNGYQSWGPLFGKLLF 318
>gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_147_C08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 516
Score = 142 bits (305), Expect = 6e-034
Identities = 54/92 (58%), Positives = 64/92 (69%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 135 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 314
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +G+ A +A+ GY+SWGPLFGKLFF
Sbjct: 315 LVINLVGIXAXFSDALNNGYQSWGPLFGKLFF 410
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 140 bits (301), Expect = 2e-033
Identities = 54/92 (58%), Positives = 64/92 (69%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAV QGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 2940 QFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELYAFKWTTLLIPPTTL 3119
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVV G+ +AI G++SWGPL GKLFF
Sbjct: 3120 LVINLVGVVVGVADAINNGFQSWGPLLGKLFF 3215
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 140 bits (301), Expect = 2e-033
Identities = 54/92 (58%), Positives = 64/92 (69%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAV QGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 2956 QFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELYAFKWTTLLIPPTTL 3135
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVV G+ +AI G++SWGPL GKLFF
Sbjct: 3136 LVINLVGVVVGVADAINNGFQSWGPLLGKLFF 3231
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 140 bits (301), Expect = 2e-033
Identities = 54/92 (58%), Positives = 64/92 (69%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAV QGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 2946 QFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELYAFKWTTLLIPPTTL 3125
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVV G+ +AI G++SWGPL GKLFF
Sbjct: 3126 LVINLVGVVVGVADAINNGFQSWGPLLGKLFF 3221
>gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048A02, mRNA sequence
Length = 671
Score = 79.9 bits (168), Expect(2) = 2e-033
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D EF+ELY FKW N +GVVAG+ AI GY+SWGPLFGKLFF
Sbjct: 122 EDGEFAELYVFKWTSLLIPPTTLLVVNLVGVVAGVSQAINSGYQSWGPLFGKLFF 286
Score = 79.4 bits (167), Expect(2) = 2e-033
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 8 QFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDED 127
>gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 5', mRNA sequence
Length = 730
Score = 79.9 bits (168), Expect(2) = 3e-033
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D EF+ELY FKW N +GVVAG+ AI GY+SWGPLFGKLFF
Sbjct: 515 EDGEFAELYVFKWTSLLIPPTTLLVVNLVGVVAGVSQAINSGYQSWGPLFGKLFF 679
Score = 79.4 bits (167), Expect(2) = 3e-033
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 401 QFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDED 520
>gb|AW290647.1|AW290647 NXNV044E04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044E04 5', mRNA sequence
Length = 327
Score = 140 bits (300), Expect = 3e-033
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAV QGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 28 QFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELYAFKWTTLLIPPTTL 207
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVV G+ +AI G++SWGPL GKLFF
Sbjct: 208 LVINLVGVVVGVXDAINXGFQSWGPLLGKLFF 303
>gb|CD027309.1|CD027309 NXNV044E04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044E04 5' similar to Arabidopsis thaliana sequence
At5g17420 cellulose synthase catalytic subunit (IRX3)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 327
Score = 140 bits (300), Expect = 3e-033
Identities = 56/92 (60%), Positives = 66/92 (71%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAV QGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 28 QFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTAKASDDGEFGELYAFKWTTLLIPPTTL 207
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVV G+ +AI G++SWGPL GKLFF
Sbjct: 208 LVINLVGVVVGVXDAINXGFQSWGPLLGKLFF 303
>gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_16_E10_A034 3', mRNA sequence
Length = 852
Score = 79.9 bits (168), Expect(2) = 3e-033
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D EF+ELY FKW N +GVVAG+ AI GY+SWGPLFGKLFF
Sbjct: 254 EDGEFAELYVFKWTSLLIPPTTLLVVNLVGVVAGVSQAINSGYQSWGPLFGKLFF 418
Score = 79.4 bits (167), Expect(2) = 3e-033
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 140 QFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDED 259
>gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACK80 3' end, mRNA sequence
Length = 707
Score = 79.9 bits (168), Expect(2) = 1e-032
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D EF+ELY FKW N +GVVAG+ AI GY+SWGPLFGKLFF
Sbjct: 178 EDGEFAELYVFKWTSLLIPPTTLLVVNLVGVVAGVSQAINSGYQSWGPLFGKLFF 342
Score = 77.1 bits (162), Expect(2) = 1e-032
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQGLLK +AG+DT+FTVT K D++
Sbjct: 64 QFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTPKSSDED 183
>gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGG33 3' end, mRNA sequence
Length = 761
Score = 79.9 bits (168), Expect(2) = 1e-032
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D EF+ELY FKW N +GVVAG+ AI GY+SWGPLFGKLFF
Sbjct: 178 EDGEFAELYVFKWTSLLIPPTTLLVVNLVGVVAGVSQAINSGYQSWGPLFGKLFF 342
Score = 77.1 bits (162), Expect(2) = 1e-032
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAVFQGLLK +AG+DT+FTVT K D++
Sbjct: 64 QFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTPKSSDED 183
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 76.2 bits (160), Expect(2) = 3e-031
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAGI AI GY +WGPLFGKLFF
Sbjct: 347 EDGDFAELYLFKWTALLIPPTTLLVINIVGVVAGISQAISSGYAAWGPLFGKLFF 511
Score = 76.2 bits (160), Expect(2) = 3e-031
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAV QGLLK +AG+DT+FTVTSK D++
Sbjct: 233 QFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKASDED 352
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 76.2 bits (160), Expect(2) = 6e-031
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAGI AI GY +WGPLFGKLFF
Sbjct: 2845 EDGDFAELYLFKWTALLIPPTTLLVINIVGVVAGISQAISSGYAAWGPLFGKLFF 3009
Score = 76.2 bits (160), Expect(2) = 6e-031
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAV QGLLK +AG+DT+FTVTSK D++
Sbjct: 2731 QFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKASDED 2850
>gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP070C12 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 650
Score = 81.7 bits (172), Expect(2) = 9e-031
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 60 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 182
Score = 68.9 bits (144), Expect(2) = 9e-031
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 174 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 338
>gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_D04 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 664
Score = 131 bits (281), Expect = 1e-030
Identities = 53/92 (57%), Positives = 61/92 (66%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 308 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIXPTTL 487
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+ VAG + + G WGPLFGKLFF
Sbjct: 488 LVXXLVXXVAGFSDXLNNGXXXWGPLFGKLFF 583
>gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_E03_A029 3', mRNA sequence
Length = 815
Score = 81.7 bits (172), Expect(2) = 1e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / -3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 381 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 259
Score = 68.9 bits (144), Expect(2) = 1e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / -3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 267 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 103
>gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_E03_A029 5', mRNA sequence
Length = 847
Score = 81.7 bits (172), Expect(2) = 1e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / -2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 705 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 583
Score = 68.9 bits (144), Expect(2) = 1e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / -2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 591 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 427
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 2761 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 2883
Score = 68.9 bits (144), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 2875 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 3039
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 1834 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1956
Score = 68.9 bits (144), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 1948 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 2112
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 1613 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1735
Score = 68.9 bits (144), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 1727 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 1891
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 1501 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1623
Score = 68.9 bits (144), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 1615 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 1779
>gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRNA, partial cds
Length = 1989
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 1055 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 1177
Score = 68.9 bits (144), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 1169 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 1333
>gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mRNA, partial cds
Length = 1258
Score = 81.7 bits (172), Expect(2) = 2e-030
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 496 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 618
Score = 68.9 bits (144), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 610 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 774
>gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_056_B10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 129 bits (276), Expect = 6e-030
Identities = 51/84 (60%), Positives = 61/84 (72%)
Frame = +3 / +3
Query: 33 SSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGV 212
S+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW N +G+
Sbjct: 3 SAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTXXVINLVGI 182
Query: 213 VAGIXNAIXXGYESWGPLFGKLFF 284
VAG +A+ GY+SWGPLFGKLFF
Sbjct: 183 VAGFSDALNNGYQSWGPLFGKLFF 254
>gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_B01_A029 3', mRNA sequence
Length = 876
Score = 79.4 bits (167), Expect(2) = 1e-029
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW GGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 140 QFWVXGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 262
Score = 68.9 bits (144), Expect(2) = 1e-029
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++++F ELY FKW N + +VAG+ A+ Y+SWGPLFGKLFF
Sbjct: 254 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFF 418
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 76.2 bits (160), Expect(2) = 1e-029
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDD 125
QFW IGGVS+HLFAV QGLLK +AGVDT+FTVTSK D+
Sbjct: 3469 QFWVIGGVSAHLFAVIQGLLKVLAGVDTNFTVTSKASDE 3585
Score = 71.6 bits (150), Expect(2) = 1e-029
Identities = 28/52 (53%), Positives = 31/52 (59%)
Frame = +3 / +1
Query: 129 EFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+F+ELY KW N +GVVAGI AI GY SWGPLFGKLFF
Sbjct: 3592 DFAELYIIKWTALLIPPTTLLIINIVGVVAGISYAISTGYRSWGPLFGKLFF 3747
>gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_18_G11_A022 5', mRNA sequence
Length = 717
Score = 76.2 bits (160), Expect(2) = 6e-029
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGGVS+HLFAV QGLLK +AG+DT+FTVTSK D++
Sbjct: 404 QFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKASDED 523
Score = 68.4 bits (143), Expect(2) = 6e-029
Identities = 26/54 (48%), Positives = 31/54 (57%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLF 281
+D +F+ELY FKW N +GVVAGI AI GY +WGPLFG F
Sbjct: 518 EDGDFAELYLFKWTALLIPPTTLLVINIVGVVAGISQAISSGYAAWGPLFGNSF 679
>gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099B08, mRNA sequence
Length = 707
Score = 123 bits (263), Expect = 4e-028
Identities = 47/80 (58%), Positives = 56/80 (70%)
Frame = +3 / +2
Query: 45 FAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGI 224
FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW N +G+VAG
Sbjct: 5 FAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTLLVINLVGIVAGF 184
Query: 225 XNAIXXGYESWGPLFGKLFF 284
+A+ GY+SWGPLFGKLFF
Sbjct: 185 SDALNNGYQSWGPLFGKLFF 244
>gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 399
Score = 122 bits (262), Expect = 5e-028
Identities = 47/84 (55%), Positives = 57/84 (67%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 136 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 315
Query: 189 XXXNFIGVVAGIXNAIXXGYESWG 260
N +G+VAG +A+ G +SWG
Sbjct: 316 LVINLVGIVAGFSDALNNG*QSWG 387
>gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_E11 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 529
Score = 122 bits (260), Expect = 9e-028
Identities = 51/91 (56%), Positives = 60/91 (65%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAV Q LLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 241 QFWVIGGVSAHFFAVIQXLLKVLAGIDTNFTVTAKXSDDGEFGELYAFKWXTLLIPPTTL 420
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLF 281
N +GVV G+ AI G++ GPL G LF
Sbjct: 421 LVINLVGVVVGVXXAINNGFQXXGPLLGXLF 513
>gb|BX679126.1|BX679126 BX679126 RS Pinus pinaster cDNA clone RS20B6, mRNA sequence
Length = 466
Score = 115 bits (246), Expect(2) = 2e-027
Identities = 47/73 (64%), Positives = 52/73 (71%)
Frame = +3 / +3
Query: 66 LKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXG 245
LK +AGVDT+FTVTSKGGDD EFSELY FKW N IGVVAG+ +AI G
Sbjct: 33 LKVLAGVDTNFTVTSKGGDDGEFSELYLFKWTNLLIPPTTLLVINIIGVVAGVSDAINNG 212
Query: 246 YESWGPLFGKLFF 284
Y SWGPLFGK+FF
Sbjct: 213 YASWGPLFGKMFF 251
Score = 23.5 bits (45), Expect(2) = 2e-027
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3 / +1
Query: 33 SSHLFAVFQG 62
S+HLFA+FQG
Sbjct: 1 SAHLFALFQG 30
>gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_117_A06 5' similar to Arabidopsis thaliana
sequence At5g05170 cellulose synthase catalytic subunit
(Ath-B) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 416
Score = 76.2 bits (160), Expect(2) = 2e-027
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDD 125
QFW IGGVS+HLFAV QGLLK +AGVDT+FTVTSK D+
Sbjct: 8 QFWVIGGVSAHLFAVIQGLLKVLAGVDTNFTVTSKASDE 124
Score = 62.5 bits (130), Expect(2) = 2e-027
Identities = 25/52 (48%), Positives = 28/52 (53%)
Frame = +3 / +2
Query: 129 EFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+F+ELY KW N + VVAGI AI GY WG LFGKLFF
Sbjct: 131 DFAELYIIKWTALLIPPTTLLIINIVXVVAGISYAISTGYRXWGXLFGKLFF 286
>gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007A04 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 696
Score = 81.7 bits (172), Expect(2) = 5e-027
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEE 131
QFW IGGVS+HLFAVFQGLLK + GVDT+FTVT+KG D+E+
Sbjct: 432 QFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEED 554
Score = 56.5 bits (117), Expect(2) = 5e-027
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLF 269
++++F ELY FKW N + +VAG+ A+ Y+SWGPLF
Sbjct: 546 EEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLF 695
>gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_20_E07_A029 5', mRNA sequence
Length = 410
Score = 117 bits (250), Expect = 2e-026
Identities = 45/80 (56%), Positives = 54/80 (67%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+H FAVFQGLLK +AG+DT+FTVT+K DD EF ELY FKW
Sbjct: 170 QFWVIGGVSAHFFAVFQGLLKVLAGIDTNFTVTAKASDDNEFGELYAFKWTTLLIPPTTL 349
Query: 189 XXXNFIGVVAGIXNAIXXGY 248
N +G+VAG +A+ GY
Sbjct: 350 LVINLVGIVAGFSDALNNGY 409
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 139,445,819
Number of Sequences: 355925
Number of extensions: 1521311
Number of successful extensions: 123209
Number of sequences better than 1.0e-020: 93
length of database: 72,425,745
effective HSP length: 48
effective length of database: 55,341,345
effective search space used: 2545701870
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)