TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 325 3e-088
gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Plani... 282 1e-075
gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Plani... 274 6e-073
gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pin... 160 9e-039
gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus adde... 152 2e-036
gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clon... 133 2e-030
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 325 bits (703), Expect = 3e-088
Identities = 127/171 (74%), Positives = 145/171 (84%)
Frame = -2 / +3
Query: 533 LERGFRTALSDFILMQLQLASVFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKF 354
LERGFR ALSDF++MQLQ+A+VFFTFSLGTKTHYYGRTLLHGGA+YR TGRGFVVFHAKF
Sbjct: 3 LERGFRKALSDFVIMQLQMAAVFFTFSLGTKTHYYGRTLLHGGAKYRGTGRGFVVFHAKF 182
Query: 353 AENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFN 174
AENYR YSRSHFVKGLELM+LL+VY ++ Q++R + YI IT SMWFMVG WLFAPFLFN
Sbjct: 183 AENYRFYSRSHFVKGLELMLLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLFAPFLFN 362
Query: 173 PSGFEWQKIVDDWTDWHKWISNRGGIGVAPXXXXXXXXXXEQEPLRCSGKR 21
PSGFEWQKIVDDWTDW+KWI+NRGGIGV +Q+ L+ +G R
Sbjct: 363 PSGFEWQKIVDDWTDWNKWINNRGGIGVPHEKSWESWWDEDQDHLKHAGLR 515
Score = 156 bits (335), Expect = 2e-037
Identities = 73/146 (50%), Positives = 99/146 (67%)
Frame = +3 / -3
Query: 90 HTNTSTIADPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*LT 269
HTNTST+ DPLVPI PVIHN LPL+SRRIEQE K P +H+PHG D D+ S ++ L
Sbjct: 446 HTNTSTVVDPLVPIRPVIHNFLPLESRRIEQERSK*PCPNHKPHGISD*DIGNSLTMCLA 267
Query: 270 KYFIHN**NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFCS 449
IHN HQL++ DK+AA I+++V K M+ +K T S SVF SSM+* ++++
Sbjct: 266 IDSIHNQEQHQLESFDKVAA*IEAVVFCKLRMKDNKSTPSTSVFCSSMK*CAAIIMCLRP 87
Query: 450 QRECEENRGQLKLHQYKITQCSSESS 527
+RE +EN L+LH +K+T +ESS
Sbjct: 86 KRESKENCCHLQLHDHKVT*GFAESS 9
Score = 131 bits (280), Expect = 6e-030
Identities = 75/161 (46%), Positives = 90/161 (55%)
Frame = -3 / +1
Query: 526 EDSELH*VILY*CSFSWPLFSSHSRWEQKLTTTEGRYSMEERNTEPLDVGLWCSMPNLLR 347
EDS *V L CS W FS S ++ Y MEE+NTE L V L M +L +
Sbjct: 10 EDSAKP*VTL*SCSCRWQQFSLLSLLGRRHIIMAAHYFMEEQNTEVLGVDLLSFMRSLQK 189
Query: 346 TIDFIPAAILSRALS**FY*LCMKYLVSHIEGL*LTSSSPYPCGSWWALGSLHHSCSILL 167
T I AA LS+ S* *LC+ + HI L S S PCG W G L SCSILL
Sbjct: 190 TTASIHAATLSKDSS*CCS*LCILSIARHIVRLFPIS*SLIPCGLWLGHGYLLLSCSILL 369
Query: 166 DLSGRRLWMTGLIGTSGSAIVEVLVWHQRKAGSHGGKKSRS 44
D SG++LWMTG IGTSGS VEVLV ++ G+ GG + R+
Sbjct: 370 DSSGKKLWMTGRIGTSGSTTVEVLVCRMKRVGNPGGMRIRT 492
Score = 122 bits (260), Expect(2) = 4e-054
Identities = 54/74 (72%), Positives = 58/74 (78%)
Frame = +1 / -1
Query: 22 RFPEQRRGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQ 201
R P R S S SH DSQLFS TPIPPRLLIHL QSVQSSTIFCHSNPEGLNR GA S
Sbjct: 514 RNPACLRWS*SSSHQDSQLFSCGTPIPPRLLIHLFQSVQSSTIFCHSNPEGLNRKGANSH 335
Query: 202 VPTMNHMDTVMKM* 243
PT+NHM+ V+K+*
Sbjct: 334 APTINHME*VIKI* 293
Score = 110 bits (234), Expect(2) = 4e-054
Identities = 53/74 (71%), Positives = 55/74 (74%)
Frame = +1 / -1
Query: 310 PLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SC 489
PLTKWLRE* R*FSAN A TTNPRPV LY APP SNV P** VFVP E VKKT A SC
Sbjct: 226 PLTKWLRE*KR*FSANFA*KTTNPRPVPLYFAPP*SNVRP**CVFVPREKVKKTAAICSC 47
Query: 490 ISIKSLNAVLNPLS 531
+ KSL A+ NP S
Sbjct: 46 MITKSLKALRNPRS 5
Score = 103 bits (219), Expect(2) = 2e-039
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = -1 / +2
Query: 246 NLHLHHRIHVVHGGHLALCTIPVQSFWI*VAEDCG*LD*LAQVDQQSWRYWCGTREKLGV 67
+L+L+H HVV+G +A+C+ PVQSFWI VA++CG*LD L QVDQQ WRYWC ++LG+
Sbjct: 290 SLYLNHLFHVVYGWGMAICSFPVQSFWIRVAKNCG*LDGLEQVDQQPWRYWCAA*KELGI 469
Query: 66 MVGKRAG 46
+VG +G
Sbjct: 470 LVG*GSG 490
Score = 80.8 bits (170), Expect(2) = 2e-023
Identities = 38/64 (59%), Positives = 42/64 (65%)
Frame = +2 / -2
Query: 47 PALFPTMTPSFSLVPHQYLHDC*STCANQSSHPQSSATQIQKD*TGMVQRAKCPP*TTWI 226
P PT P+ HQYLH C*STC+N SSHPQ AT+IQKD*TG Q A P*TTW
Sbjct: 489 PDPHPTRIPNSFHAAHQYLHGC*STCSNPSSHPQFFATRIQKD*TGKEQIAMPQP*TTWN 310
Query: 227 R**R 238
+* R
Sbjct: 309 K*LR 298
Score = 79.9 bits (168), Expect(2) = 2e-039
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = -1 / +2
Query: 525 RIQNCIE*FYTDAASVGLCFLHILVGNKNSLLRKDVTPWRSGIQSHWTWVCGVPCQIC*E 346
RI ++* AA+ G FL+ L ++++LL +T WRS IQ +W W+C + C++C +
Sbjct: 11 RIPQSLK*LCDHAAADGSSFLYFLSWDEDTLLWPHITSWRSKIQRYWAWICCLSCEVCRK 190
Query: 345 LSTLFPQPFCQGP*ADDSTSCV 280
L LF QP CQ D + CV
Sbjct: 191 LPLLFTQPLCQRTRVDAALDCV 256
Score = 48.3 bits (99), Expect(2) = 2e-023
Identities = 28/71 (39%), Positives = 37/71 (52%)
Frame = +2 / -2
Query: 278 HTQLVESSAQGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCIPLLHGVTSFRSSEFLFPTR 457
+TQ +S + *Q+GC N+ S Q H Q H Q+LCI LLH V ++ R
Sbjct: 258 YTQSRAASTRVL*QSGCVNRSGSFLQTSHERQQIHAQYLCILLLHEVMCGHNNVSSSQER 79
Query: 458 M*RKQRPTEAA 490
*RK P+ AA
Sbjct: 78 K*RKLLPSAAA 46
>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_G06 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 421
Score = 282 bits (611), Expect = 1e-075
Identities = 106/127 (83%), Positives = 116/127 (91%)
Frame = -2 / +1
Query: 470 VFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMIL 291
VFFTFSLGTKTHYYGRTLLHGGA+YRATGRGFVVFHAKFA+NYR YSRSHFVKGLELM+L
Sbjct: 1 VFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFADNYRFYSRSHFVKGLELMLL 180
Query: 290 LVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWIS 111
L+VY ++GQ YR I Y+ IT SMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDW+KW +
Sbjct: 181 LIVYNVYGQPYRNTIAYLLITFSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWXN 360
Query: 110 NRGGIGV 90
+ G IGV
Sbjct: 361 SHGXIGV 381
Score = 183 bits (395), Expect = 8e-046
Identities = 88/139 (63%), Positives = 91/139 (65%)
Frame = +1 / -3
Query: 52 SFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNHMDTV 231
S SH S TPI P L HL QSVQSSTIFCHSNPEGLNR GAKS VPT+NHM+ V
Sbjct: 419 SSSHXXSXXLXXGTPIXPWLXXHLFQSVQSSTIFCHSNPEGLNRKGAKSHVPTINHMEKV 240
Query: 232 MKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPP 411
+K * I Y P PLTK LRE* R* SANLA TT PRPVALY APP
Sbjct: 239 IKR*AIVLRYGWP*TLYTINSNINSSPLTK*LRE*KR*LSANLA*KTTKPRPVALYFAPP 60
Query: 412 WSNVLP***VFVPNENVKK 468
WSNV P** VFVP E VKK
Sbjct: 59 WSNVRP**CVFVPREKVKK 3
Score = 156 bits (336), Expect = 1e-037
Identities = 66/127 (51%), Positives = 89/127 (70%)
Frame = +3 / -2
Query: 90 HTNTSTIADPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*LT 269
HTN S PLVPI PVI+N LPLKSRRI+QE CKEP H+PHG D ++ S +I L
Sbjct: 381 HTNXSMAVXPLVPICPVIYNFLPLKSRRIKQERCKEPRPDHKPHGKSD*EIGDSITIRLA 202
Query: 270 KYFIHN**NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFCS 449
+HN * HQLK+ DK+ A +K++V+ K GM+ +K T S SVF S+ME*RP++++ C
Sbjct: 201 IDIVHNQ*QHQLKSFDKVTA*VKAVVIRKLGMKDNKTTPSSSVFCSTME*RPAIIMCLCP 22
Query: 450 QRECEEN 470
+R+ +EN
Sbjct: 21 KRKSKEN 1
Score = 150 bits (323), Expect = 7e-036
Identities = 64/128 (50%), Positives = 79/128 (61%)
Frame = -1 / +3
Query: 468 FLHILVGNKNSLLRKDVTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQGP*ADDST 289
FL+ +K++LL DVTPW S IQS+W W C + CQ+C L L Q CQ * D +
Sbjct: 3 FLYFFSWDKDTLLWPDVTPWWSKIQSYWAWFCCLSCQVCG*LPLLLTQSLCQRT*VDVAI 182
Query: 288 SCV*NIWSVI*RGYNLHLHHRIHVVHGGHLALCTIPVQSFWI*VAEDCG*LD*LAQVDQQ 109
CV +W + Y L L+H HVV+G +ALCT PV SFWI*VA++C *LD L QV Q
Sbjct: 183 DCVQCLWPTVS*YYRLSLNHFFHVVYGRDVALCTFPV*SFWI*VAKNCR*LDRLEQVXXQ 362
Query: 108 SWRYWCGT 85
W YWC T
Sbjct: 363 PWXYWCAT 386
Score = 119 bits (255), Expect = 2e-026
Identities = 63/122 (51%), Positives = 73/122 (59%)
Frame = -3 / +2
Query: 424 GRYSMEERNTEPLDVGLWCSMPNLLRTIDFIPAAILSRALS**FY*LCMKYLVSHIEGL* 245
GRYSM E+NTE L V L MP+L T F A LS+ LS* Y*LC + + I L
Sbjct: 47 GRYSMVEQNTELLGVVLLSFMPSLRITTAFTHAVTLSKDLS*CCY*LCTMSMANRIVILS 226
Query: 244 LTSSSPYPCGSWWALGSLHHSCSILLDLSGRRLWMTGLIGTSGSAIVEVLVWHQRKAGSH 65
S S +PCG W GSLH SC ILLDLSG++L MTG IGTSG +E LV H +
Sbjct: 227 PIS*SLFPCGLWSGRGSLHLSCLILLDLSGKKL*MTGQIGTSGXTAMEXLVCHXXRXXXX 406
Query: 64 GG 59
GG
Sbjct: 407 GG 412
Score = 74.8 bits (157), Expect(2) = 2e-023
Identities = 35/51 (68%), Positives = 37/51 (72%)
Frame = +2 / -1
Query: 86 VPHQYLHDC*STCANQSSHPQSSATQIQKD*TGMVQRAKCPP*TTWIR**R 238
V HQ LH C STC+N SSH Q ATQIQKD*TG VQRA P*TTW +* R
Sbjct: 385 VAHQXLHGCXSTCSNLSSHLQFFATQIQKD*TGKVQRATSRP*TTWKK*LR 233
Score = 54.2 bits (112), Expect(2) = 2e-023
Identities = 28/63 (44%), Positives = 35/63 (55%)
Frame = +2 / -1
Query: 281 TQLVESSAQGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCIPLLHGVTSFRSSEFLFPTRM 460
TQ + +S Q *Q+ C +K S Q WH Q H Q LCI L HGVTS ++ L +
Sbjct: 190 TQSIATSTQVL*QSDCVSKSGSYPQTWHERQQNHAQ*LCILLHHGVTSGHNNVSLSQEKK 11
Query: 461 *RK 469
*RK
Sbjct: 10 *RK 2
>gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_C11 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 601
Score = 274 bits (592), Expect = 6e-073
Identities = 111/153 (72%), Positives = 129/153 (84%)
Frame = -2 / +2
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N L+ AS S V G LMALPM+MEIGLERGFR+ALSDF++MQLQLASVFFTFSLGTK
Sbjct: 119 NFPLEAVLASQSLVQIGLLMALPMVMEIGLERGFRSALSDFVIMQLQLASVFFTFSLGTK 298
Query: 440 THYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQS 261
THY+GRT+LHGGA+YRATGRGFVV H K+AENYRLYSRSHF KGLELM+LL VY I+ +
Sbjct: 299 THYFGRTILHGGAKYRATGRGFVVRHEKYAENYRLYSRSHFTKGLELMMLLFVYNIYCSA 478
Query: 260 YRGAITYIFITVSMWFMVGTWLFAPFLFNPSGF 162
+ ++Y+ IT+SMWF+V TWLFAPFLFNP F
Sbjct: 479 AKDFVSYLLITLSMWFLVVTWLFAPFLFNPXXF 577
Score = 129 bits (276), Expect(2) = 2e-033
Identities = 63/96 (65%), Positives = 67/96 (69%)
Frame = +1 / -2
Query: 310 PLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SC 489
P KWL E*S *FSA + TT PRPVALY APP VLP **VFVP ENVKKTEA+ SC
Sbjct: 429 PFVKWLLE*SL*FSAYFSCRTTKPRPVALYFAPPCKIVLPK**VFVPRENVKKTEASCSC 250
Query: 490 ISIKSLNAVLNPLSKPISIIMGSAIKNPXXTKDXDA 597
I KSLNA P SKPISI +G AI P T+D DA
Sbjct: 249 IITKSLNADRKPRSKPISITIGKAISRPI*TRDCDA 142
Score = 106 bits (226), Expect = 2e-022
Identities = 54/132 (40%), Positives = 70/132 (53%)
Frame = -3 / +3
Query: 568 F*WRCP**WKSVWREDSELH*VILY*CSFSWPLFSSHSRWEQKLTTTEGRYSMEERNTEP 389
+*W C W+ W E S LH*VIL CS + PL SHS W Q+L G++ M ++ P
Sbjct: 171 Y*WPCQWLWRLAWNEASGLH*VILLLCSCNLPLSFSHSLWVQRLIILAGQFCMVVQSIGP 350
Query: 388 LDVGLWCSMPNLLRTIDFIPAAILSRALS**FY*LCMKYLVSHIEGL*LTSSSPYPCGSW 209
L LWC M N+ R FI A + S** + L + ++ + L LT + CG W
Sbjct: 351 LGEVLWCGMRNMQRITGFIRGATSQKDWS**CFSLSITFIALLQKILSLTC**HFQCGFW 530
Query: 208 WALGSLHHSCSI 173
W G L HSCSI
Sbjct: 531 W*HGCLLHSCSI 566
Score = 104 bits (221), Expect = 8e-022
Identities = 53/145 (36%), Positives = 79/145 (54%)
Frame = -1 / +1
Query: 606 GXSCVXVFCAXWIFDGAAHDDGNRFGERIQNCIE*FYTDAASVGLCFLHILVGNKNSLLR 427
G SC+ V + +G A+ G+ G R+ CI+*F AA+ LC HIL G K+SL
Sbjct: 133 GSSCIAVSGSDRSTNGLANGYGDWLGTRLPVCIK*FCYYAAATCLCLFHILSGYKDSLFW 312
Query: 426 KDVTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQGP*ADDSTSCV*NIWSVI*RGY 247
+D W + HW CG +IC EL LF +P + ADD++ C+*++ R
Sbjct: 313 QDNFAWWCKV*GHWARFCGAA*EICRELQALFEEPLHKRTGADDASLCL*HLLLCCKRFC 492
Query: 246 NLHLHHRIHVVHGGHLALCTIPVQS 172
L +++ +VV GG + +C+I VQS
Sbjct: 493 LLPVNNTFNVVFGGDMVVCSILVQS 567
Score = 100 bits (212), Expect(2) = 2e-024
Identities = 39/90 (43%), Positives = 62/90 (68%)
Frame = +3 / -1
Query: 294 NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFCSQRECEENR 473
+HQL++ ++A IK ++L F M HHK + SG + ++M+ P+ ++S C+QRECE++R
Sbjct: 445 HHQLQSFCEVAPRIKPVILCIFLMPHHKTSPSGPILCTTMQNCPAKIMSLCTQRECEKDR 266
Query: 474 GQLKLHQYKITQCSSESSLQTDFHHHGQRH 563
G+L+LH KIT C E+S Q + H+H Q H
Sbjct: 265 GKLQLHNNKIT*CRPEASFQANLHNHWQGH 176
Score = 33.6 bits (67), Expect(2) = 2e-033
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3 / -1
Query: 162 KSRRIEQEWCKEPSAHHEPH 221
K+ IEQEW K+P H +PH
Sbjct: 577 KTXGIEQEWSKQPCHHQKPH 518
Score = 32.7 bits (65), Expect(2) = 2e-024
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1 / -2
Query: 172 GLNRNGAKSQVPTMNHMDTVM 234
GLN+NGA + V T NH+++V+
Sbjct: 567 GLNKNGANNHVTTKNHIESVI 505
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 5', mRNA sequence
Length = 607
Score = 160 bits (344), Expect = 9e-039
Identities = 61/97 (62%), Positives = 74/97 (76%)
Frame = -2 / +1
Query: 311 GLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWT 132
GLELM+LL+VY ++ Q++R + YI IT SMWFMVG WLFAPFLFNPSGFEWQKIVDDWT
Sbjct: 1 GLELMLLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLFAPFLFNPSGFEWQKIVDDWT 180
Query: 131 DWHKWISNRGGIGVAPXXXXXXXXXXEQEPLRCSGKR 21
DW+KWI+NRGGIGV +Q+ L+ +G R
Sbjct: 181 DWNKWINNRGGIGVPHEKSWESWWDEDQDHLKHAGLR 291
Score = 122 bits (260), Expect = 4e-027
Identities = 54/74 (72%), Positives = 58/74 (78%)
Frame = +1 / -3
Query: 22 RFPEQRRGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQ 201
R P R S S SH DSQLFS TPIPPRLLIHL QSVQSSTIFCHSNPEGLNR GA S
Sbjct: 290 RNPACLRWS*SSSHQDSQLFSCGTPIPPRLLIHLFQSVQSSTIFCHSNPEGLNRKGANSH 111
Query: 202 VPTMNHMDTVMKM* 243
PT+NHM+ V+K+*
Sbjct: 110 APTINHME*VIKI* 69
Score = 103 bits (219), Expect = 2e-021
Identities = 39/67 (58%), Positives = 53/67 (79%)
Frame = -1 / +3
Query: 246 NLHLHHRIHVVHGGHLALCTIPVQSFWI*VAEDCG*LD*LAQVDQQSWRYWCGTREKLGV 67
+L+L+H HVV+G +A+C+ PVQSFWI VA++CG*LD L QVDQQ WRYWC ++LG+
Sbjct: 66 SLYLNHLFHVVYGWGMAICSFPVQSFWIRVAKNCG*LDGLEQVDQQPWRYWCAA*KELGI 245
Query: 66 MVGKRAG 46
+VG +G
Sbjct: 246 LVG*GSG 266
>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F10_A029 5', mRNA sequence
Length = 753
Score = 152 bits (327), Expect = 2e-036
Identities = 63/102 (61%), Positives = 74/102 (72%)
Frame = -2 / +1
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N L A + G A+PM+M LE+GF A+ F MQLQL S+FFTFSLGT+
Sbjct: 448 NTALTAALNTQFLFQIGIFTAVPMIMGFILEQGFLKAIVSFFTMQLQLCSIFFTFSLGTR 627
Query: 440 THYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFV 315
THY+GRT+LHGGA Y+ATGRGFVV H KFA+NYRLYSRSHFV
Sbjct: 628 THYFGRTILHGGAXYKATGRGFVVQHIKFADNYRLYSRSHFV 753
>gb|AL750522.1|AL750522 AL750522 RN Pinus pinaster cDNA clone RN03D12 similar to GLUCAN
(CALLOSE) SYNTHASE, mRNA sequence
Length = 378
Score = 133 bits (284), Expect = 2e-030
Identities = 52/77 (67%), Positives = 57/77 (74%)
Frame = -2 / +2
Query: 248 ITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGVAPXXXXX 69
I Y+ IT MWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDW+KWI++ GGIGV
Sbjct: 8 IAYLLITFCMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWINSHGGIGVPQDKSWE 187
Query: 68 XXXXXEQEPLRCSGKRG 18
EQE L+ SG RG
Sbjct: 188 SWWDDEQEHLKYSGLRG 238
Score = 131 bits (280), Expect = 6e-030
Identities = 57/77 (74%), Positives = 59/77 (76%)
Frame = +1 / -1
Query: 19 PRFPEQRRGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKS 198
PR PE R SCS SH DSQL S TPIPP LLIHL QSVQSSTIFCHSNPEGLNR GA S
Sbjct: 237 PRKPEYLRCSCSSSHQDSQLLSCGTPIPPWLLIHLFQSVQSSTIFCHSNPEGLNRKGANS 58
Query: 199 QVPTMNHMDTVMKM*VI 249
VPT+NHM V+K * I
Sbjct: 57 HVPTINHMQKVIKR*AI 7
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 368,075,021
Number of Sequences: 355925
Number of extensions: 5842137
Number of successful extensions: 50422
Number of sequences better than 1.0e-020: 9
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)