TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCG13d12.yg.2.1
         (755 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR388038.1|DR388038  RTHG1_25_F10.g1_A029 Roots plus adde...   133   2e-030

>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_25_F10_A029 5', mRNA sequence
          Length = 753

 Score =  133 bits (284), Expect = 2e-030
 Identities = 47/58 (81%), Positives = 57/58 (98%)
 Frame = -2 / +1

                                                                     
Query: 187 NPLRVRFHYGHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYL 14
           NPL+VR HYGHPD+FDR+FHITRGG+SKAS+IIN+SEDI+AGFNSTLR+GN+THHEY+
Sbjct: 1   NPLKVRMHYGHPDVFDRIFHITRGGISKASRIINISEDIYAGFNSTLRQGNITHHEYI 174



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 361,008,169
Number of Sequences: 355925
Number of extensions: 5048714
Number of successful extensions: 30771
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10729611355
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)