TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF7a10.yg.2.1
(523 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR052757.1|DR052757 RTCA1_6_E04.g1_A029 Roots minus calc... 184 1e-059
gb|CO166148.1|CO166148 FLD1_59_E03.g1_A029 Root flooded Pin... 184 2e-059
gb|DR071198.1|DR071198 RTDK1_18_F12.b1_A029 Roots, dark Pin... 184 2e-059
gb|DR057937.1|DR057937 RTNIT1_8_E08.g1_A029 Roots minus nit... 168 2e-054
gb|BQ696623.1|BQ696623 NXPV_043_D05_F NXPV (Nsf Xylem Plani... 174 8e-053
gb|CO197051.1|CO197051 GEO1_3_C05.g1_A029 Root gravitropism... 143 7e-045
gb|DT637598.1|DT637598 EST1152529 Normalized pine embryo li... 143 2e-044
gb|DR693051.1|DR693051 EST1083139 Normalized pine embryo li... 140 1e-043
gb|BE187099.1|BE187099 NXNV_155_F10_F Nsf Xylem Normal wood... 154 1e-040
gb|BX248935.1|BX248935 BX248935 Pinus pinaster differenciat... 132 3e-039
gb|BE241154.1|BE241154 NXNV_173_E06_F Nsf Xylem Normal wood... 148 2e-035
gb|BQ655331.1|BQ655331 NXRV093_A03_F NXRV (Nsf Xylem Root w... 136 1e-031
gb|BE123675.1|BE123675 NXNV_151_C09_F Nsf Xylem Normal wood... 119 1e-026
>gb|DR052757.1|DR052757 RTCA1_6_E04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_E04_A029 5', mRNA sequence
Length = 805
Score = 184 bits (397), Expect(2) = 1e-059
Identities = 76/113 (67%), Positives = 92/113 (81%)
Frame = +3 / +3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSH
Sbjct: 123 DSGQRHHYIAKVLLAACLTIFCIIALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSH 302
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
A RLL+DSYRVTIVDNLSRGN+GAVK+L+ FP+PGRLQFI ADLGD K+V+
Sbjct: 303 AVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFICADLGDSKAVN 461
Score = 133 bits (285), Expect(2) = 3e-038
Identities = 64/107 (59%), Positives = 73/107 (68%)
Frame = -1 / -1
Query: 367 NSFRSIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKA 188
N+F + T SP+SA++NCSLPG GN R+FTAP FP +RLSTMVT * S +S K
Sbjct: 484 NAFSANILFTALLSPKSAQINCSLPGSGNCSLRSFTAPRFPRERLSTMVTL*ESFRSRKT 305
Query: 187 ACEPI*PAPPVTKTWVTPGSWRENTLLPPKPGDCFRANIQSVVRTRA 47
ACEPI*PAPPVT T VTP S NT P KP DC RA IQ +VR A
Sbjct: 304 ACEPI*PAPPVTST*VTPNSCLLNTSEPLKPDDCLRAIIQKMVRQAA 164
Score = 82.2 bits (173), Expect(2) = 1e-026
Identities = 44/105 (41%), Positives = 63/105 (60%)
Frame = -3 / -3
Query: 341 YRFLVPQISKDEL*STRLRK*ALQNLYCSHISSR*IIHNGNSIAIL*EP*SGM*TNITSS 162
YRF + Q+S ++L +R K + LY IS IIHNG S+ IL*+ + M*TNITS+
Sbjct: 458 YRFAITQVSTNKLQPSRFWKLLFKKLYSP*ISP*KIIHNGYSVGIL*KSKNSM*TNITST 279
Query: 161 SCY*DVGNTRFMARKHTIATKTRRLLQSKYTECCEDQGCNDFSNI 27
+CY* + + +FM +H KTR L QS T+ + +FSN+
Sbjct: 278 TCY*HMSDPQFMPIEHI*TIKTR*LSQSNNTKNGKTGSQKNFSNV 144
Score = 65.2 bits (136), Expect(2) = 1e-059
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +1 / +3
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
VNKIFAENAFDAVMHFAA AYVGEST++P
Sbjct: 456 VNKIFAENAFDAVMHFAAVAYVGESTIDP 542
Score = 57.0 bits (118), Expect(2) = 1e-026
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = -3 / -1
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKCITASNAFSANIL T
Sbjct: 541 GSIVLSPT*ATAAKCITASNAFSANILFT 455
Score = 44.6 bits (91), Expect(2) = 3e-038
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2 / -3
Query: 513 CALSHISXSCKVHHSIKCIFSKYLV 439
CAL+HIS S +VH+ +KCIF KY +
Sbjct: 533 CALAHISHSSEVHYCVKCIFCKYFI 459
>gb|CO166148.1|CO166148 FLD1_59_E03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 5', mRNA sequence
Length = 885
Score = 184 bits (396), Expect(2) = 2e-059
Identities = 76/113 (67%), Positives = 92/113 (81%)
Frame = +3 / +2
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSH
Sbjct: 365 DSGQRHHYIAKVLLAACLTIFCIVALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSH 544
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
A RLL+DSYRVTIVDNLSRGN+GAVK+L+ FP+PGRLQFI ADLGD K+V+
Sbjct: 545 AVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFICADLGDSKAVN 703
Score = 134 bits (288), Expect(2) = 1e-038
Identities = 64/107 (59%), Positives = 73/107 (68%)
Frame = -1 / -1
Query: 367 NSFRSIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKA 188
N+F + T SP+SA++NCSLPG GN R+FTAP FP +RLSTMVT * S +S K
Sbjct: 726 NAFSANILFTALLSPKSAQINCSLPGSGNCSLRSFTAPRFPRERLSTMVTL*ESFRSRKT 547
Query: 187 ACEPI*PAPPVTKTWVTPGSWRENTLLPPKPGDCFRANIQSVVRTRA 47
ACEPI*PAPPVT T VTP S NT P KP DC RA IQ +VR A
Sbjct: 546 ACEPI*PAPPVTST*VTPNSCLLNTSEPLKPDDCLRATIQKMVRQAA 406
Score = 82.2 bits (173), Expect(2) = 1e-026
Identities = 44/105 (41%), Positives = 63/105 (60%)
Frame = -3 / -3
Query: 341 YRFLVPQISKDEL*STRLRK*ALQNLYCSHISSR*IIHNGNSIAIL*EP*SGM*TNITSS 162
YRF + Q+S ++L +R K + LY IS IIHNG S+ IL*+ + M*TNITS+
Sbjct: 700 YRFAITQVSTNKLQPSRFWKLLFKKLYSP*ISP*KIIHNGYSVGIL*KSKNSM*TNITST 521
Query: 161 SCY*DVGNTRFMARKHTIATKTRRLLQSKYTECCEDQGCNDFSNI 27
+CY* + + +FM +H KTR L QS T+ + +FSN+
Sbjct: 520 TCY*HMSDPQFMPIEHI*TIKTR*LSQSNNTKNGKTGSQKNFSNV 386
Score = 65.2 bits (136), Expect(2) = 2e-059
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +1 / +2
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
VNKIFAENAFDAVMHFAA AYVGEST++P
Sbjct: 698 VNKIFAENAFDAVMHFAAVAYVGESTIDP 784
Score = 57.0 bits (118), Expect(2) = 1e-026
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = -3 / -1
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKCITASNAFSANIL T
Sbjct: 783 GSIVLSPT*ATAAKCITASNAFSANILFT 697
Score = 44.6 bits (91), Expect(2) = 1e-038
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2 / -3
Query: 513 CALSHISXSCKVHHSIKCIFSKYLV 439
CAL+HIS S +VH+ +KCIF KY +
Sbjct: 775 CALAHISHSSEVHYCVKCIFCKYFI 701
>gb|DR071198.1|DR071198 RTDK1_18_F12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_F12_A029 3', mRNA sequence
Length = 817
Score = 184 bits (396), Expect(2) = 2e-059
Identities = 76/113 (67%), Positives = 92/113 (81%)
Frame = +3 / -3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSH
Sbjct: 533 DSGQRHHYIAKVLLAACLTIFCIVALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSH 354
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
A RLL+DSYRVTIVDNLSRGN+GAVK+L+ FP+PGRLQFI ADLGD K+V+
Sbjct: 353 AVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFICADLGDSKAVN 195
Score = 134 bits (288), Expect(2) = 1e-038
Identities = 64/107 (59%), Positives = 73/107 (68%)
Frame = -1 / +1
Query: 367 NSFRSIDEDTDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKA 188
N+F + T SP+SA++NCSLPG GN R+FTAP FP +RLSTMVT * S +S K
Sbjct: 172 NAFSANILFTALLSPKSAQINCSLPGSGNCSLRSFTAPRFPRERLSTMVTL*ESFRSRKT 351
Query: 187 ACEPI*PAPPVTKTWVTPGSWRENTLLPPKPGDCFRANIQSVVRTRA 47
ACEPI*PAPPVT T VTP S NT P KP DC RA IQ +VR A
Sbjct: 352 ACEPI*PAPPVTST*VTPNSCLLNTSEPLKPDDCLRATIQKMVRQAA 492
Score = 82.2 bits (173), Expect(2) = 1e-026
Identities = 44/105 (41%), Positives = 63/105 (60%)
Frame = -3 / +3
Query: 341 YRFLVPQISKDEL*STRLRK*ALQNLYCSHISSR*IIHNGNSIAIL*EP*SGM*TNITSS 162
YRF + Q+S ++L +R K + LY IS IIHNG S+ IL*+ + M*TNITS+
Sbjct: 198 YRFAITQVSTNKLQPSRFWKLLFKKLYSP*ISP*KIIHNGYSVGIL*KSKNSM*TNITST 377
Query: 161 SCY*DVGNTRFMARKHTIATKTRRLLQSKYTECCEDQGCNDFSNI 27
+CY* + + +FM +H KTR L QS T+ + +FSN+
Sbjct: 378 TCY*HMSDPQFMPIEHI*TIKTR*LSQSNNTKNGKTGSQKNFSNV 512
Score = 65.2 bits (136), Expect(2) = 2e-059
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +1 / -3
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
VNKIFAENAFDAVMHFAA AYVGEST++P
Sbjct: 200 VNKIFAENAFDAVMHFAAVAYVGESTIDP 114
Score = 57.0 bits (118), Expect(2) = 1e-026
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = -3 / +1
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKCITASNAFSANIL T
Sbjct: 115 GSIVLSPT*ATAAKCITASNAFSANILFT 201
Score = 44.6 bits (91), Expect(2) = 1e-038
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -2 / +3
Query: 513 CALSHISXSCKVHHSIKCIFSKYLV 439
CAL+HIS S +VH+ +KCIF KY +
Sbjct: 123 CALAHISHSSEVHYCVKCIFCKYFI 197
>gb|DR057937.1|DR057937 RTNIT1_8_E08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 5', mRNA sequence
Length = 840
Score = 168 bits (362), Expect(2) = 2e-054
Identities = 69/102 (67%), Positives = 83/102 (81%)
Frame = +3 / +3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSH
Sbjct: 243 DSGQRHHYIAKVLLAACLTIFCIIALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSH 422
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFI 311
A RLL+DSYRVTIVDNLSRGN+GAVK+L+ FP+PGRLQFI
Sbjct: 423 AVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFI 548
Score = 122 bits (262), Expect(2) = 3e-038
Identities = 57/89 (64%), Positives = 63/89 (70%)
Frame = -1 / -3
Query: 313 KMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTP 134
++NCSLPG GN R+FTAP FP +RLSTMVT * S +S K ACEPI*PAPPVT T VTP
Sbjct: 550 QINCSLPGSGNCSLRSFTAPRFPRERLSTMVTL*ESFRSRKTACEPI*PAPPVTST*VTP 371
Query: 133 GSWRENTLLPPKPGDCFRANIQSVVRTRA 47
S NT P KP DC RA IQ +VR A
Sbjct: 370 NSCLLNTSEPLKPDDCLRAIIQKMVRQAA 284
Score = 65.2 bits (136), Expect(2) = 2e-054
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +1 / +2
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
VNKIFAENAFDAVMHFAA AYVGEST++P
Sbjct: 575 VNKIFAENAFDAVMHFAAVAYVGESTIDP 661
Score = 57.0 bits (118), Expect(2) = 3e-038
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = -3 / -1
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKCITASNAFSANIL T
Sbjct: 660 GSIVLSPT*ATAAKCITASNAFSANILFT 574
>gb|BQ696623.1|BQ696623 NXPV_043_D05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_043_D05 5' similar to Arabidopsis
thaliana sequence At1g30620 UDP-galactose
4-epimerase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 174 bits (374), Expect(2) = 8e-053
Identities = 73/113 (64%), Positives = 87/113 (76%)
Frame = +3 / +3
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSH
Sbjct: 57 DSGQRHHYIAKVLLAACLTIFCIVALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSH 236
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQFIFADLGDQKSVS 344
A RLL+DSYRVTIVDNLSRGN+ AVK+L+ FP PG QFI ADLGD K V+
Sbjct: 237 AVFRLLKDSYRVTIVDNLSRGNLXAVKLLKEQFPXPGXXQFICADLGDSKXVN 395
Score = 122 bits (260), Expect(2) = 4e-036
Identities = 58/98 (59%), Positives = 64/98 (65%)
Frame = -1 / -2
Query: 340 TDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAP 161
T SP+SA++NC PG GN R+ TA FP +RLSTMVT * S S K ACEPI*PAP
Sbjct: 391 TXLLSPKSAQINCXXPGXGNCSLRSLTAXRFPRERLSTMVTL*ESFXSRKTACEPI*PAP 212
Query: 160 PVTKTWVTPGSWRENTLLPPKPGDCFRANIQSVVRTRA 47
PVT T VTP S NT P KP DC RA IQ +VR A
Sbjct: 211 PVTST*VTPNSCLLNTSEPLKPDDCLRATIQKMVRQAA 98
Score = 52.8 bits (109), Expect(2) = 8e-053
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +1 / +3
Query: 436 VNKIFAENAFDAVMHFAAXAYVGEST 513
VNKIFA NAFDAVMHFAA AYVG T
Sbjct: 390 VNKIFAXNAFDAVMHFAAXAYVGXXT 467
Score = 49.2 bits (101), Expect(2) = 4e-036
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = -3 / -2
Query: 512 VLSPT*AXAAKCITASNAFSANILLT 435
V SPT*A AAKCITASNAF ANIL T
Sbjct: 466 VXSPT*AXAAKCITASNAFXANILFT 389
>gb|CO197051.1|CO197051 GEO1_3_C05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_C05_A029 5', mRNA sequence
Length = 702
Score = 143 bits (306), Expect(2) = 7e-045
Identities = 58/75 (77%), Positives = 67/75 (89%)
Frame = +3 / +3
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPG 296
FSRHE GV H+LVTGGAGYIGSHA+LRLL+D + VTIVDNLSRGN+GAV VLQ LFP P
Sbjct: 120 FSRHEEGVQHILVTGGAGYIGSHASLRLLEDGHMVTIVDNLSRGNLGAVHVLQQLFPHPN 299
Query: 297 RLQFIFADLGDQKSV 341
+LQFI+ADLGD+K+V
Sbjct: 300 QLQFIYADLGDKKAV 344
Score = 98.7 bits (209), Expect(2) = 4e-028
Identities = 45/76 (59%), Positives = 53/76 (69%)
Frame = -1 / -3
Query: 340 TDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAP 161
T F SP+SA MNCS GCGN C+T TAP FP +RLST+VT * S S + AC+P+ PAP
Sbjct: 343 TAFLSPKSA*MNCS*LGCGNNCCKT*TAPKFPRERLSTIVTM*PSSNSRREACDPMYPAP 164
Query: 160 PVTKTWVTPGSWRENT 113
PVTK TP S EN+
Sbjct: 163 PVTKMC*TPSSCLENS 116
Score = 57.4 bits (119), Expect(2) = 7e-045
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +1 / +3
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
V++IF NAFDAVMHFAA AYVGESTL+P
Sbjct: 342 VDEIFKNNAFDAVMHFAAVAYVGESTLDP 428
Score = 45.5 bits (93), Expect(2) = 4e-028
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -3 / -3
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKC+TASNA NI T
Sbjct: 427 GSRVLSPT*ATAAKCMTASNALFLNISST 341
>gb|DT637598.1|DT637598 EST1152529 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH548 3' end, mRNA sequence
Length = 831
Score = 143 bits (306), Expect(2) = 2e-044
Identities = 58/75 (77%), Positives = 67/75 (89%)
Frame = +3 / +1
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPG 296
FSRHE GV H+LVTGGAGYIGSHA+LRLL+D + VTIVDNLSRGN+GAV VLQ LFP P
Sbjct: 103 FSRHEEGVQHILVTGGAGYIGSHASLRLLEDGHMVTIVDNLSRGNLGAVHVLQQLFPHPN 282
Query: 297 RLQFIFADLGDQKSV 341
+LQFI+ADLGD+K+V
Sbjct: 283 QLQFIYADLGDKKAV 327
Score = 98.7 bits (209), Expect(2) = 8e-028
Identities = 45/76 (59%), Positives = 53/76 (69%)
Frame = -1 / -2
Query: 340 TDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAP 161
T F SP+SA MNCS GCGN C+T TAP FP +RLST+VT * S S + AC+P+ PAP
Sbjct: 326 TAFLSPKSA*MNCS*LGCGNNCCKT*TAPKFPRERLSTIVTM*PSSNSRREACDPMYPAP 147
Query: 160 PVTKTWVTPGSWRENT 113
PVTK TP S EN+
Sbjct: 146 PVTKMC*TPSSCLENS 99
Score = 55.6 bits (115), Expect(2) = 2e-044
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +1 / +1
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
V++IF NAFDAV+HFAA AYVGESTL+P
Sbjct: 325 VDEIFKNNAFDAVVHFAAVAYVGESTLDP 411
Score = 44.6 bits (91), Expect(2) = 8e-028
Identities = 21/29 (72%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKC TASNA NI T
Sbjct: 410 GSRVLSPT*ATAAKCTTASNALFLNISST 324
>gb|DR693051.1|DR693051 EST1083139 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADT74 3' end, mRNA sequence
Length = 691
Score = 140 bits (301), Expect(2) = 1e-043
Identities = 57/75 (76%), Positives = 66/75 (88%)
Frame = +3 / +2
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPG 296
FSRHE GV H+LVTGGAGYIG HA+LRLL+D + VTIVDNLSRGN+GAV VLQ LFP P
Sbjct: 95 FSRHEEGVQHILVTGGAGYIGPHASLRLLEDGHMVTIVDNLSRGNLGAVHVLQQLFPHPN 274
Query: 297 RLQFIFADLGDQKSV 341
+LQFI+ADLGD+K+V
Sbjct: 275 QLQFIYADLGDKKAV 319
Score = 96.8 bits (205), Expect(2) = 3e-027
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = -1 / -2
Query: 340 TDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAP 161
T F SP+SA MNCS GCGN C+T TAP FP +RLST+VT * S S + AC P+ PAP
Sbjct: 318 TAFLSPKSA*MNCS*LGCGNNCCKT*TAPKFPRERLSTIVTM*PSSNSRREACGPMYPAP 139
Query: 160 PVTKTWVTPGSWRENT 113
PVTK TP S EN+
Sbjct: 138 PVTKMC*TPSSCLENS 91
Score = 55.6 bits (115), Expect(2) = 1e-043
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +1 / +2
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTLEP 522
V++IF NAFDAV+HFAA AYVGESTL+P
Sbjct: 317 VDEIFKNNAFDAVVHFAAVAYVGESTLDP 403
Score = 44.6 bits (91), Expect(2) = 3e-027
Identities = 21/29 (72%), Positives = 21/29 (72%)
Frame = -3 / -2
Query: 521 GSNVLSPT*AXAAKCITASNAFSANILLT 435
GS VLSPT*A AAKC TASNA NI T
Sbjct: 402 GSRVLSPT*ATAAKCTTASNALFLNISST 316
>gb|BE187099.1|BE187099 NXNV_155_F10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_155_F10 5' similar to Arabidopsis thaliana
sequence At1g30620 UDP-galactose 4-epimerase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 314
Score = 154 bits (330), Expect(2) = 1e-040
Identities = 65/89 (73%), Positives = 74/89 (83%)
Frame = +3 / +2
Query: 72 IFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGN 251
I AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSHA RLL+DSY VTIVDNLSRGN
Sbjct: 2 IVALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSHAVFRLLKDSYXVTIVDNLSRGN 181
Query: 252 MGAVKVLQGLFPQPGRLQFIFADLGDQKS 338
+ AVK+L+ FP+PGRL I ADLGD K+
Sbjct: 182 LXAVKLLKEQFPEPGRLXXICADLGDSKA 268
Score = 114 bits (243), Expect(2) = 2e-028
Identities = 54/86 (62%), Positives = 60/86 (69%)
Frame = -1 / -3
Query: 328 SPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTK 149
SP+SA++ SLPG GN R+FTA FP +RLSTMVT * S +S K ACEPI*PAPPVT
Sbjct: 258 SPKSAQIXXSLPGSGNCSLRSFTAXRFPRERLSTMVTX*ESFRSRKTACEPI*PAPPVTS 79
Query: 148 TWVTPGSWRENTLLPPKPGDCFRANI 71
T VTP S NT P KP DC RA I
Sbjct: 78 T*VTPNSCLLNTSEPLKPDDCLRATI 1
Score = 31.3 bits (62), Expect(2) = 1e-040
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1 / +2
Query: 442 KIFAENAFDAVMH 480
KIFAENAFDA MH
Sbjct: 275 KIFAENAFDAXMH 313
Score = 29.9 bits (59), Expect(2) = 2e-028
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -3 / -3
Query: 479 CITASNAFSANIL 441
CI ASNAFSANIL
Sbjct: 312 CIXASNAFSANIL 274
>gb|BX248935.1|BX248935 BX248935 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP002H04, mRNA sequence
Length = 332
Score = 132 bits (283), Expect(2) = 3e-039
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = +3 / +3
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPG 296
FSR E GV H+LVTGGAGYIGSHA+LRLL+D + VTIV NLSRGN+GAV VLQ LFP P
Sbjct: 30 FSRREEGVQHILVTGGAGYIGSHASLRLLEDGHMVTIVHNLSRGNLGAVHVLQQLFPHPN 209
Query: 297 RLQFIFADLGDQKSV 341
+LQFI+ADL D+K+V
Sbjct: 210 QLQFIYADLRDKKAV 254
Score = 90.9 bits (192), Expect(2) = 7e-023
Identities = 43/76 (56%), Positives = 50/76 (65%)
Frame = -1 / -2
Query: 340 TDFWSPRSAKMNCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAP 161
T F S +SA MNCS GCGN C T TAP FP +RL T+VT * S S + AC+P+ PAP
Sbjct: 253 TAFLSRKSA*MNCS*LGCGNSCCNT*TAPKFPRERLCTIVTM*PSSNSRREACDPMYPAP 74
Query: 160 PVTKTWVTPGSWRENT 113
PVTK TP S EN+
Sbjct: 73 PVTKMC*TPSSRLENS 26
Score = 48.3 bits (99), Expect(2) = 3e-039
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1 / +3
Query: 436 VNKIFAENAFDAVMHFAAXAYVGESTL 516
V++IF NAFDAVMHFA Y GESTL
Sbjct: 252 VDEIFKNNAFDAVMHFAVAVYAGESTL 332
Score = 35.0 bits (70), Expect(2) = 7e-023
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -3 / -2
Query: 512 VLSPT*AXAAKCITASNAFSANILLT 435
VLSP * AKC+TASNA NI T
Sbjct: 328 VLSPA*TATAKCMTASNALFLNISST 251
>gb|BE241154.1|BE241154 NXNV_173_E06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_173_E06 5' similar to Arabidopsis thaliana
sequence At1g30620 UDP-galactose 4-epimerase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 511
Score = 148 bits (318), Expect = 2e-035
Identities = 62/101 (61%), Positives = 75/101 (74%)
Frame = +3 / +1
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+RHE GVTHVLVTGGAGYIGSH
Sbjct: 208 DSGQRHHYIAKVLLAXFLTIFCIIALRQSSGFNGSDVFNRHELGVTHVLVTGGAGYIGSH 387
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPGRLQF 308
A RLL+DSYRVTIVDNLS N+ AVK+L+ FP PG F
Sbjct: 388 AXFRLLKDSYRVTIVDNLSXXNLXAVKLLKEQFPXPGXXXF 510
Score = 101 bits (215), Expect = 4e-021
Identities = 51/87 (58%), Positives = 55/87 (63%)
Frame = -1 / -3
Query: 307 NCSLPGCGNKPCRTFTAPIFPLDRLSTMVTR*LSCKSLKAACEPI*PAPPVTKTWVTPGS 128
N PG GN R+FTA +RLSTMVT * S +S K ACEPI*PAPPVT T VTP S
Sbjct: 509 NXXXPGXGNCSLRSFTAXRXXXERLSTMVTL*ESFRSRKXACEPI*PAPPVTST*VTPNS 330
Query: 127 WRENTLLPPKPGDCFRANIQSVVRTRA 47
NT P KP DC RA IQ +VR A
Sbjct: 329 CLLNTSEPLKPDDCLRAIIQKMVRKXA 249
>gb|BQ655331.1|BQ655331 NXRV093_A03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV093_A03 5' similar to Arabidopsis thaliana
sequence At1g30620 UDP-galactose 4-epimerase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 526
Score = 136 bits (291), Expect = 1e-031
Identities = 55/71 (77%), Positives = 62/71 (87%)
Frame = +3 / +1
Query: 117 FSRHEPGVTHVLVTGGAGYIGSHAALRLLQDSYRVTIVDNLSRGNMGAVKVLQGLFPQPG 296
FSRHE GV H+LVTGGAGYIGSHA+LRLL+D + VTIVDNLSRGN+GAV VLQ FP P
Sbjct: 235 FSRHEEGVQHILVTGGAGYIGSHASLRLLEDGHMVTIVDNLSRGNLGAVHVLQXXFPHPN 414
Query: 297 RLQFIFADLGD 329
+LQFI+ADLGD
Sbjct: 415 QLQFIYADLGD 447
>gb|BE123675.1|BE123675 NXNV_151_C09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_151_C09 5' similar to Arabidopsis thaliana
sequence At1g30620 UDP-galactose 4-epimerase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 471
Score = 119 bits (255), Expect = 1e-026
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +3 / +1
Query: 6 DARRKPRNVGKIIAALVLTTLCIFALKQSPGFGGNSVFSRHEPGVTHVLVTGGAGYIGSH 185
D+ ++ + K++ A LT CI AL+QS GF G+ VF+ HE GVTHVLVTGGA YIGSH
Sbjct: 208 DSGQRHHYIAKVLLAXFLTIFCIIALRQSSGFNGSDVFNXHELGVTHVLVTGGAXYIGSH 387
Query: 186 AALRLLQDSYRVTIVDNLSRGNMGAVKV 269
A RLL+ YRVTI DNLS N+ A K+
Sbjct: 388 AVFRLLKXXYRVTIXDNLSXXNLXAXKL 471
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 296,147,826
Number of Sequences: 355925
Number of extensions: 4439200
Number of successful extensions: 50072
Number of sequences better than 1.0e-020: 19
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6621375540
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)