TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCF4h05.yg.2.1
         (697 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR388038.1|DR388038  RTHG1_25_F10.g1_A029 Roots plus adde...   274   6e-073
gb|BG625791.1|BG625791  NXPV_066_B06_F NXPV (Nsf Xylem Plani...   160   9e-039
gb|BG625796.1|BG625796  NXPV_066_B11_F NXPV (Nsf Xylem Plani...   160   9e-039

>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_25_F10_A029 5', mRNA sequence
          Length = 753

 Score =  274 bits (592), Expect = 6e-073
 Identities = 111/117 (94%), Positives = 114/117 (97%)
 Frame = -2 / +1

                                                                       
Query: 369 NPLKVRMHYGHPDVFDRIFHITRGGISKASRSINISEDIYAGFNSTLRQGCITHHEYIQV 190
           NPLKVRMHYGHPDVFDRIFHITRGGISKASR INISEDIYAGFNSTLRQG ITHHEYIQV
Sbjct: 1   NPLKVRMHYGHPDVFDRIFHITRGGISKASRIINISEDIYAGFNSTLRQGNITHHEYIQV 180

                                                                    
Query: 189 GKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYVTTVGFYFCT 19
           GKGRDVGLNQIA+FEGKVAGGNGEQVLSRD+YRLGQLFDFFRMLSFY +TVGFYFCT
Sbjct: 181 GKGRDVGLNQIAMFEGKVAGGNGEQVLSRDVYRLGQLFDFFRMLSFYFSTVGFYFCT 351




 Score =  121 bits (258), Expect = 7e-027
 Identities = 57/116 (49%), Positives = 80/116 (68%)
 Frame = +1 / -1

                                                                       
Query: 22  TEVESNSCHVEG*HPEKVKKLSESIYVSAKNLFTISTSNFSFK*CNLIKSNIPTFANLNI 201
           T++++N   VE *HP++VK+L + I +SA NLF+I T NF  K  NLIKSNI TF++LN+
Sbjct: 348 TKIKANCREVER*HPKEVKELPKPINISA*NLFSIPTCNFPLKHRNLIKSNISTFSHLNV 169

                                                                   
Query: 202 FMMSYASLTQS*VESCIYILTDIDAARGLTNSTPCYMKNSIKNIWMTIVHSHFQRV 369
           FMM   SL    V+ CI I T I+    L  ++ C +KNS+KNIW+TIVH++  R+
Sbjct: 168 FMMRDISLP*CGVKPCIDIFTYINNT*CLAYASSCDVKNSVKNIWVTIVHTNL*RI 1




 Score = 83.5 bits (176), Expect(3) = 4e-026
 Identities = 37/47 (78%), Positives = 38/47 (80%)
 Frame = +2 / -2

                                                          
Query: 20  VQK*NPTVVT*KDNILKKSKSCPSLYMSRLRTCSPFPPATFPSNSAI 160
           VQK* PTV  * DNILKKSKSCPS   S L+TCSPFPPATFPSN AI
Sbjct: 350 VQK*KPTVEK*NDNILKKSKSCPSR*TSLLKTCSPFPPATFPSNIAI 210




 Score = 41.8 bits (85), Expect(3) = 4e-026
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +2 / -2

                                         
Query: 197 IYS**VMHP*RRVELNPAYISSLILMLREA 286
           +YS* V+ P R VELNPA ISSLIL++R+A
Sbjct: 173 MYS*CVIFPCRNVELNPA*ISSLILIIRDA 84




 Score = 30.4 bits (60), Expect(3) = 4e-026
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3 / -3

                         
Query: 312 EKFYQKHLDDHSAF 353
           EKF QKHL DHSA+
Sbjct: 58  EKFCQKHLGDHSAY 17



>gb|BG625791.1|BG625791 NXPV_066_B06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_066_B06 5' similar to Arabidopsis
           thaliana sequence At2g13675 callose synthase
           (1,3-beta-glucan synthase) like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 401

 Score =  160 bits (344), Expect = 9e-039
 Identities = 65/79 (82%), Positives = 70/79 (88%)
 Frame = -2 / +3

                                                                       
Query: 261 EDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQ 82
           EDI+AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+ FE KVA GNGEQ LSRDIYRLG 
Sbjct: 3   EDIFAGFNSTLRKGNVTHHEYMQVGKGRDVGLNQISQFEAKVANGNGEQTLSRDIYRLGH 182

                              
Query: 81  LFDFFRMLSFYVTTVGFYF 25
            FDFFRMLS Y TTVGFYF
Sbjct: 183 RFDFFRMLSCYFTTVGFYF 239



>gb|BG625796.1|BG625796 NXPV_066_B11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_066_B11 5' similar to Arabidopsis
           thaliana sequence At5g13000 callose synthase catalytic
           subunit -like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 517

 Score =  160 bits (344), Expect = 9e-039
 Identities = 65/79 (82%), Positives = 70/79 (88%)
 Frame = -2 / +3

                                                                       
Query: 261 EDIYAGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQ 82
           EDI+AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+ FE KVA GNGEQ LSRDIYRLG 
Sbjct: 3   EDIFAGFNSTLRKGNVTHHEYMQVGKGRDVGLNQISQFEAKVANGNGEQTLSRDIYRLGH 182

                              
Query: 81  LFDFFRMLSFYVTTVGFYF 25
            FDFFRMLS Y TTVGFYF
Sbjct: 183 RFDFFRMLSCYFTTVGFYF 239



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 278,914,215
Number of Sequences: 355925
Number of extensions: 3574503
Number of successful extensions: 24900
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9651258455
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)