TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.063O07F020916.3.1
         (657 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO361234.1|CO361234  NDL2_3_D02.g1_A029 Needles control 2...    88   9e-021

>gb|CO361234.1|CO361234 NDL2_3_D02.g1_A029 Needles control 2 Pinus taeda cDNA clone
           NDL2_3_D02_A029 5', mRNA sequence
          Length = 696

 Score = 87.7 bits (185), Expect(2) = 9e-021
 Identities = 36/56 (64%), Positives = 48/56 (85%)
 Frame = +2 / +3

                                                                   
Query: 476 VGSKGVIKKEEFVRIITKTLYSLGYEKSGAVLEEESGIILHNPMVKLFREQVIGWK 643
           VGSKG+I++ EFVRIIT+ LYSLGY+K+GA+LEEESGI+L +  V LFR+Q++  K
Sbjct: 492 VGSKGLIRRVEFVRIITQALYSLGYQKAGALLEEESGILLQSSNVALFRKQILDGK 659




 Score = 32.2 bits (64), Expect(2) = 9e-021
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2 / +3

                              
Query: 314 FMGGSEDDEPPSKRARTSS 370
           FMG  ED+EPP KR + SS
Sbjct: 333 FMGAIEDEEPPLKRLKVSS 389



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 376,068,395
Number of Sequences: 355925
Number of extensions: 6034786
Number of successful extensions: 80612
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8950329070
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)