TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.006B01F020311.3.1
         (609 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI397974.1|BI397974  NXPV_112_H04_F NXPV (Nsf Xylem Plani...   117   8e-026
gb|DR167393.1|DR167393  RTPHOS1_18_B12.g1_A029 Roots minus p...    93   7e-023

>gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_112_H04 5' similar to Arabidopsis
           thaliana sequence At3g10740 putative
           alpha-L-arabinofuranosidase see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 332

 Score =  117 bits (250), Expect = 8e-026
 Identities = 48/80 (60%), Positives = 57/80 (71%)
 Frame = +1 / +2

                                                                       
Query: 175 RKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVET 354
           R+IP T  G+FF  + H GAGG+WAELVSN  FEAGGPNTPSNI       D+ SV + T
Sbjct: 77  RQIPSTLFGLFFXXINHAGAGGLWAELVSNXXFEAGGPNTPSNIXXXSPXXDEXSVLLAT 256

                               
Query: 355 DRSSCFSRNIVALRMEVLCN 414
           DRSS F  N +ALRME+LC+
Sbjct: 257 DRSSLFELNKIALRMEILCD 316



>gb|DR167393.1|DR167393 RTPHOS1_18_B12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
           clone RTPHOS1_18_B12_A029 5', mRNA sequence
          Length = 785

 Score = 93.0 bits (197), Expect(2) = 7e-023
 Identities = 33/55 (60%), Positives = 45/55 (81%)
 Frame = +1 / +1

                                                                  
Query: 412 NDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
           N CP GGVG+YNPG+WGMNIE+G++YH+V++V+S     L++S TSSDGL  LA+
Sbjct: 76  NQCPVGGVGVYNPGYWGMNIEEGESYHVVLWVRSTGPVNLSISFTSSDGLNILAA 240




 Score = 34.0 bits (68), Expect(2) = 7e-023
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +1 / +1

                               
Query: 355 DRSSCFSRNIVALRMEVLCN 414
           DRSS F  N +ALRME+LC+
Sbjct: 4   DRSSLFELNKIALRMEILCD 63



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.317    0.136    0.423 


Matrix: BLOSUM62
Number of Hits to DB: 384,298,418
Number of Sequences: 355925
Number of extensions: 6104565
Number of successful extensions: 62614
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 8412769260
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)