TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 204 3e-068
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 204 2e-065
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 201 2e-063
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 163 1e-054
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 163 1e-054
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 166 3e-051
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 157 1e-050
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 157 1e-050
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 157 1e-050
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 162 2e-050
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 156 4e-049
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 153 1e-048
gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip libra... 151 4e-048
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 150 5e-048
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 152 5e-047
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 148 1e-046
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 148 1e-046
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 148 1e-046
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 148 2e-046
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 147 2e-046
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 148 8e-046
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 145 1e-045
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 133 1e-045
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 133 1e-045
gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C fo... 148 7e-045
gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2... 143 2e-044
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 141 2e-044
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 141 2e-044
gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control P... 144 6e-044
gb|CF477905.1|CF477905 RTWW3_13_C03.g1_A022 Well-watered lo... 137 9e-044
gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side ... 148 9e-044
gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus pota... 138 1e-043
gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control P... 147 3e-043
gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stresse... 174 5e-043
gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus p... 135 8e-043
gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control P... 137 2e-042
gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C fo... 139 2e-042
gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch... 139 2e-042
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 133 5e-042
gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinu... 143 7e-042
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 161 1e-041
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 130 3e-041
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 142 3e-041
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 129 5e-041
gb|CF475091.1|CF475091 RTWW2_5_F10.g1_A021 Well-watered lob... 144 5e-041
gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pin... 129 1e-040
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 145 2e-040
gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added... 144 2e-040
gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added... 144 2e-040
gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Plani... 165 3e-040
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 127 3e-040
gb|BF609979.1|BF609979 NXSI_053_C11_F NXSI (Nsf Xylem Side ... 155 4e-040
gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus... 132 6e-040
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 140 8e-040
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 140 8e-040
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 144 2e-039
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 140 2e-039
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 144 2e-039
gb|CF470618.1|CF470618 RTDS1_13_H10.g1_A015 Drought-stresse... 152 3e-039
gb|CF397637.1|CF397637 RTDS3_4_A07.g1_A022 Drought-stressed... 128 3e-039
gb|CF396041.1|CF396041 RTDS2_20_C12.g1_A021 Drought-stresse... 152 3e-039
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 139 3e-039
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 123 4e-039
gb|BQ654804.1|BQ654804 NXRV085_H06_F NXRV (Nsf Xylem Root w... 161 5e-039
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 137 5e-039
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 139 5e-039
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 160 7e-039
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 160 7e-039
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 136 7e-039
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 134 1e-038
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 137 1e-038
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 160 1e-038
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 154 1e-038
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 159 2e-038
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 158 3e-038
gb|CV034962.1|CV034962 RTNACL1_12_F05.g1_A029 Roots plus ad... 158 3e-038
gb|CX714163.1|CX714163 RTPQ1_18_D03.g1_A032 Roots treated w... 158 3e-038
gb|CO163969.1|CO163969 FLD1_45_A11.b1_A029 Root flooded Pin... 129 4e-038
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 134 4e-038
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 158 4e-038
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 158 4e-038
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 107 7e-038
gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip libra... 137 7e-038
gb|DR015810.1|DR015810 STRS1_5_F07.g1_A034 Shoot tip pitch ... 92 7e-038
gb|DR683171.1|DR683171 EST1073247 Normalized pine embryo li... 149 9e-038
gb|DT631296.1|DT631296 EST1146227 Normalized pine embryo li... 149 9e-038
gb|DR683172.1|DR683172 EST1073248 Normalized pine embryo li... 149 9e-038
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 156 1e-037
gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip libra... 156 2e-037
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 156 2e-037
gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus adde... 156 2e-037
gb|DT632905.1|DT632905 EST1147836 Normalized pine embryo li... 156 2e-037
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 131 2e-037
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 155 2e-037
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 155 2e-037
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 155 2e-037
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 127 3e-037
gb|DT633408.1|DT633408 EST1148339 Normalized pine embryo li... 86 3e-037
gb|DR686505.1|DR686505 EST1076583 Normalized pine embryo li... 86 3e-037
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 155 4e-037
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 116 6e-037
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 91 6e-037
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 91 6e-037
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 91 6e-037
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 129 8e-037
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 91 2e-036
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 100 1e-035
gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus ad... 127 1e-035
gb|CF393224.1|CF393224 RTDR3_17_B01.g1_A022 Loblolly pine r... 149 1e-035
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 149 1e-035
gb|CO368386.1|CO368386 RTK1_40_G08.b1_A029 Roots minus pota... 127 2e-035
gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo li... 121 4e-035
gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo li... 121 4e-035
gb|BX678005.1|BX678005 BX678005 RN Pinus pinaster cDNA clon... 144 5e-035
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 108 9e-035
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 145 3e-034
gb|CO362169.1|CO362169 RTK1_1_F07.g1_A029 Roots minus potas... 123 3e-034
gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus ni... 122 3e-034
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 106 4e-034
gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control P... 144 6e-034
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 144 6e-034
gb|DR015700.1|DR015700 STRS1_5_D02.b1_A034 Shoot tip pitch ... 119 8e-034
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 116 1e-033
gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clon... 143 2e-033
gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropis... 143 2e-033
gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2... 143 2e-033
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 95 3e-033
gb|DR015783.1|DR015783 STRS1_5_D02.g1_A034 Shoot tip pitch ... 119 4e-033
gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2... 140 8e-033
gb|CX651169.1|CX651169 COLD1_50_D03.g1_A029 Root cold Pinus... 140 8e-033
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 90 1e-032
gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response R... 115 2e-032
gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pin... 115 2e-032
gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine r... 115 2e-032
gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pin... 115 2e-032
gb|BX680288.1|BX680288 BX680288 RS Pinus pinaster cDNA clon... 138 5e-032
gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulf... 113 7e-032
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 137 7e-032
gb|DR386238.1|DR386238 RTHG1_13_G03.g1_A029 Roots plus adde... 115 9e-032
gb|DR384837.1|DR384837 RTHG1_4_H08.g1_A029 Roots plus added... 111 1e-031
gb|CV033497.1|CV033497 RTNACL1_34_H05.g1_A029 Roots plus ad... 111 1e-031
gb|DR089238.1|DR089238 RTAL1_7_A05.g1_A029 Roots plus added... 111 1e-031
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 95 6e-031
gb|CF663690.1|CF663690 RTCNT1_4_C02.g1_A029 Root control Pi... 112 6e-031
gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus ad... 133 9e-031
gb|DR055413.1|DR055413 RTCA1_23_C03.g2_A029 Roots minus cal... 76 1e-030
gb|CF395899.1|CF395899 RTDS2_19_G06.g1_A021 Drought-stresse... 126 2e-030
gb|CV034623.1|CV034623 RTNACL1_10_A11.g1_A029 Roots plus ad... 132 3e-030
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 92 8e-030
gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iro... 122 2e-029
gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compr... 106 3e-029
gb|CF396536.1|CF396536 RTDS2_22_H07.g1_A021 Drought-stresse... 84 6e-029
gb|CV035967.1|CV035967 RTNACL1_43_E10.g1_A029 Roots plus ad... 101 7e-029
gb|DR690028.1|DR690028 EST1080114 Normalized pine embryo li... 102 9e-029
gb|DT635793.1|DT635793 EST1150724 Normalized pine embryo li... 102 9e-029
gb|CO362724.1|CO362724 RTK1_5_A02.g1_A029 Roots minus potas... 105 4e-028
gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pin... 87 6e-028
gb|CF672338.1|CF672338 RTCNT1_62_H04.g1_A029 Root control P... 86 7e-027
gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response R... 82 1e-026
gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 ... 113 2e-026
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 115 3e-025
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 86 8e-025
gb|DR746217.1|DR746217 RTCU1_35_B06.g1_A029 Roots plus adde... 84 2e-024
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 110 1e-023
gb|CF392063.1|CF392063 RTDR3_12_C02.g1_A022 Loblolly pine r... 85 2e-023
gb|CD022618.1|CD022618 NXPV_071_H11_F NXPV (Nsf Xylem Plani... 108 5e-023
gb|CV033833.1|CV033833 RTNACL1_36_H06.g1_A029 Roots plus ad... 106 1e-022
gb|DR112102.1|DR112102 RTS1_25_H07.g1_A029 Roots minus sulf... 106 1e-022
gb|DR167893.1|DR167893 RTPHOS1_21_G02.g1_A029 Roots minus p... 68 3e-022
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 81 6e-022
>gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_H05_A029 3', mRNA sequence
Length = 793
Score = 204 bits (440), Expect(2) = 3e-068
Identities = 76/88 (86%), Positives = 83/88 (94%)
Frame = +2 / -2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGRHSCCYKQKLRKGLWSPEEDEKL+ HITK+GHGCWS+VPK AGLQRCGKSCRLRWINY
Sbjct: 699 MGRHSCCYKQKLRKGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINY 520
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F+ EE+LI+ELH+VLGNR
Sbjct: 519 LRPDLKRGTFSPQEENLIVELHSVLGNR 436
Score = 100 bits (214), Expect(2) = 4e-033
Identities = 41/90 (45%), Positives = 61/90 (67%)
Frame = -3 / +1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
VPED +Q ++E+FF+ EC SL++W Q+V PP+P TL A L+ S + PA+MA+ +
Sbjct: 439 VPED*MQFNNEIFFLRRECASLQIWSQVVDPPKPATLPATLEASLLWHCTPASMAVFGNM 618
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNA 275
H+ LIL R P+ L + L VAAR+ PH ++
Sbjct: 619 AHQLLILFRRPQTLPEFLFVAARVAPHYSS 708
Score = 74.8 bits (157), Expect(2) = 3e-068
Identities = 31/41 (75%), Positives = 33/41 (80%)
Frame = +2 / -2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
SQIA LPGRTDNEIKNLWNS IK LRQ+GIDPNT L+
Sbjct: 432 SQIATHLPGRTDNEIKNLWNSCIKKKLRQRGIDPNTHRPLS 310
Score = 60.6 bits (126), Expect(2) = 4e-033
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -1 / +2
Query: 660 VLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI* 556
VLGSMP CL LM EF RFLISLSVLPG C AI*
Sbjct: 326 VLGSMPRCLSFFLMHEFQRFLISLSVLPGRCVAI* 430
>gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_D07 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 764
Score = 204 bits (440), Expect(2) = 2e-065
Identities = 76/88 (86%), Positives = 83/88 (94%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGRHSCCYKQKLRKGLWSPEEDEKL+ HITK+GHGCWS+VPK AGLQRCGKSCRLRWINY
Sbjct: 320 MGRHSCCYKQKLRKGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINY 499
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F+ EE+LI+ELH+VLGNR
Sbjct: 500 LRPDLKRGTFSPQEENLIVELHSVLGNR 583
Score = 100 bits (214), Expect(2) = 2e-030
Identities = 41/90 (45%), Positives = 61/90 (67%)
Frame = -3 / -2
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
VPED +Q ++E+FF+ EC SL++W Q+V PP+P TL A L+ S + PA+MA+ +
Sbjct: 580 VPED*MQFNNEIFFLRRECASLQIWSQVVDPPKPATLPATLEASLLWHCTPASMAVFGNM 401
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNA 275
H+ LIL R P+ L + L VAAR+ PH ++
Sbjct: 400 AHQLLILFRRPQTLPEFLFVAARVAPHYSS 311
Score = 65.2 bits (136), Expect(2) = 2e-065
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
SQIA LPGRTDNEIKNLWNS IK R +GID NT
Sbjct: 587 SQIATHLPGRTDNEIKNLWNSCIKXXXRXRGIDXNT 694
Score = 51.9 bits (107), Expect(2) = 2e-030
Identities = 27/35 (77%), Positives = 27/35 (77%)
Frame = -1 / -3
Query: 660 VLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI* 556
VL SMP L LM EF RFLISLSVLPG C AI*
Sbjct: 693 VLXSMPRXLXXFLMHEFQRFLISLSVLPGRCVAI* 589
>gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_E09 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 742
Score = 201 bits (433), Expect(2) = 2e-063
Identities = 75/88 (85%), Positives = 82/88 (93%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGRHSCCYKQKLRKGLWSPEEDEKL+ HITK+GHGCWS+VPK AGLQRCGKSCRLRWINY
Sbjct: 326 MGRHSCCYKQKLRKGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINY 505
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F+ E+LI+ELH+VLGNR
Sbjct: 506 LRPDLKRGTFSPXXENLIVELHSVLGNR 589
Score = 96.8 bits (205), Expect(2) = 1e-029
Identities = 40/90 (44%), Positives = 59/90 (65%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
VPED +Q ++E+F EC SL++W Q+V PP+P TL A L+ S + PA+MA+ +
Sbjct: 586 VPED*MQFNNEIFXXRRECASLQIWSQVVDPPKPATLPATLEASLLWHCTPASMAVFGNM 407
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNA 275
H+ LIL R P+ L + L VAAR+ PH ++
Sbjct: 406 AHQLLILFRRPQTLPEFLFVAARVAPHYSS 317
Score = 62.0 bits (129), Expect(2) = 2e-063
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
SQIA LPG TDNEIKNLWNS IK LRQ+G NT
Sbjct: 593 SQIATHLPGXTDNEIKNLWNSCIKKKLRQRGXXXNT 700
Score = 52.8 bits (109), Expect(2) = 1e-029
Identities = 24/35 (68%), Positives = 24/35 (68%)
Frame = -1 / -2
Query: 660 VLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI* 556
VL P CL LM EF RFLISLSVLPG C AI*
Sbjct: 699 VLXXXPRCLSFFLMHEFQRFLISLSVLPGRCVAI* 595
>gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_E02_A029 5', mRNA sequence
Length = 708
Score = 163 bits (351), Expect(2) = 1e-054
Identities = 62/89 (69%), Positives = 70/89 (78%)
Frame = +2 / +1
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L+KG W+ EED KL+N IT HGHGCW VPKLAGL RCGKSCRLRW N
Sbjct: 169 KMGRQPCCDKVGLKKGPWTAEEDRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTN 348
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG ++ EE LII+LHA +GNR
Sbjct: 349 YLRPDLKRGLLSESEEKLIIDLHAAIGNR 435
Score = 75.8 bits (159), Expect(2) = 4e-022
Identities = 36/91 (39%), Positives = 41/91 (45%)
Frame = -1 / -2
Query: 546 LFPRTACXXXXXXXXSWANAPLLRSGLR*FIHLSLQLFPHL*SPASLGTELQQPWPCFVM 367
LFP AC N P +SG +*F+ +LQL PHL PASLGT Q PWPC V+
Sbjct: 434 LFPMAACRSMMSFSSDSDNNPRFKSGRK*FVQRNLQLLPHLSRPASLGTSRQHPWPCRVI 255
Query: 366 XXXXXXXXXXXXXXXXXFCL*QQECLPISTQ 274
L Q CLPI Q
Sbjct: 254 KFTSFLSSSAVHGPFFNPTLSQHGCLPIFCQ 162
Score = 70.3 bits (147), Expect(2) = 1e-054
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
S+IAAQLPGRTDNEIKN WN+ IK LRQ GIDP T LT
Sbjct: 439 SRIAAQLPGRTDNEIKNYWNTRIKKKLRQMGIDPVTHKPLT 561
Score = 48.7 bits (100), Expect(2) = 4e-022
Identities = 22/39 (56%), Positives = 25/39 (64%)
Frame = -1 / -2
Query: 675 VSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
V WV GS+P L+ F FLISLSVLPG+CAAI
Sbjct: 560 VRGLWVTGSIPIWRSFFLILVFQ*FLISLSVLPGNCAAI 444
>gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (MYB1) mRNA, complete cds
Length = 1023
Score = 163 bits (350), Expect(2) = 1e-054
Identities = 62/88 (70%), Positives = 69/88 (78%)
Frame = +2 / +1
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K L+KG W+ EED KL+N IT HGHGCW VPKLAGL RCGKSCRLRW NY
Sbjct: 1 MGRQPCCDKVGLKKGPWTAEEDRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTNY 180
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG ++ EE LII+LHA +GNR
Sbjct: 181 LRPDLKRGLLSESEEKLIIDLHAAIGNR 264
Score = 73.0 bits (153), Expect(2) = 3e-021
Identities = 34/87 (39%), Positives = 39/87 (44%)
Frame = -1 / -2
Query: 546 LFPRTACXXXXXXXXSWANAPLLRSGLR*FIHLSLQLFPHL*SPASLGTELQQPWPCFVM 367
LFP AC N P +SG +*F+ +LQL PHL PASLGT Q PWPC V+
Sbjct: 263 LFPMAACRSMMSFSSDSDNNPRFKSGRK*FVQRNLQLLPHLSRPASLGTSRQHPWPCRVI 84
Query: 366 XXXXXXXXXXXXXXXXXFCL*QQECLP 286
L Q CLP
Sbjct: 83 KFTSFLSSSAVHGPFFNPTLSQHGCLP 3
Score = 70.3 bits (147), Expect(2) = 1e-054
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
S+IAAQLPGRTDNEIKN WN+ IK LRQ GIDP T LT
Sbjct: 268 SRIAAQLPGRTDNEIKNYWNTRIKKKLRQMGIDPVTHKPLT 390
Score = 48.7 bits (100), Expect(2) = 3e-021
Identities = 22/39 (56%), Positives = 25/39 (64%)
Frame = -1 / -2
Query: 675 VSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
V WV GS+P L+ F FLISLSVLPG+CAAI
Sbjct: 389 VRGLWVTGSIPIWRSFFLILVFQ*FLISLSVLPGNCAAI 273
>gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130B11, mRNA sequence
Length = 685
Score = 166 bits (356), Expect(2) = 3e-051
Identities = 65/93 (69%), Positives = 74/93 (79%)
Frame = +2 / +2
Query: 269 LHCVEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRL 448
+ C G S K KLRKGLWSPEED+KL+N++ K+G GCWS V K AGLQRCGKSCRL
Sbjct: 47 MSCTTGGLSSPISKPKLRKGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRL 226
Query: 449 RWINYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
RWINYLRPDLKRGAF+ EE LII LH++LGNR
Sbjct: 227 RWINYLRPDLKRGAFSPQEEQLIIHLHSILGNR 325
Score = 82.6 bits (174), Expect(2) = 1e-020
Identities = 36/60 (60%), Positives = 38/60 (63%)
Frame = -1 / -2
Query: 546 LFPRTACXXXXXXXXSWANAPLLRSGLR*FIHLSLQLFPHL*SPASLGTELQQPWPCFVM 367
L PR C NAP LRSGL+* IHLSLQLFPHL PA L T LQQPWP F+M
Sbjct: 324 LLPRMECRCMINCSSWGENAPRLRSGLK*LIHLSLQLFPHLCRPACLATSLQQPWPFFIM 145
Score = 56.5 bits (117), Expect(2) = 3e-051
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
SQIAA+LPGRTDNEIKN WNS IK L+ N ++
Sbjct: 329 SQIAARLPGRTDNEIKNFWNSCIKKKLKHLSASTNNSKSIS 451
Score = 37.3 bits (75), Expect(2) = 1e-020
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = -1 / -2
Query: 639 CLXXXLMXEFHRFLISLSVLPGSCAAI*XXXL 544
C M EF +FLISLSV PG AAI* L
Sbjct: 414 CFNFFFMQEFQKFLISLSVRPGKRAAI*DHLL 319
>gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC94 3' end, mRNA sequence
Length = 822
Score = 157 bits (338), Expect(2) = 1e-050
Identities = 60/89 (67%), Positives = 70/89 (78%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
EMGR CC K L+KG W+ EED+KL++ I HGH CW +VPKLAGL RCGKSCRLRW N
Sbjct: 78 EMGRQPCCDKVGLKKGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTN 257
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG ++ EE LII+LH+ LGNR
Sbjct: 258 YLRPDLKRGLLSESEEQLIIDLHSQLGNR 344
Score = 62.5 bits (130), Expect(2) = 1e-050
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IAA LPGRTDNEIKN WN+ IK L++ GIDP T
Sbjct: 348 SKIAAHLPGRTDNEIKNYWNTHIKKKLKRMGIDPVT 455
>gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI92 3' end, mRNA sequence
Length = 822
Score = 157 bits (338), Expect(2) = 1e-050
Identities = 60/89 (67%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
EMGR CC K L+KG W+ EED+KL++ I HGH CW +VPKLAGL RCGKSCRLRW N
Sbjct: 86 EMGRQPCCDKVGLKKGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTN 265
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG ++ EE LII+LH+ LGNR
Sbjct: 266 YLRPDLKRGLLSESEEQLIIDLHSQLGNR 352
Score = 62.5 bits (130), Expect(2) = 1e-050
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IAA LPGRTDNEIKN WN+ IK L++ GIDP T
Sbjct: 356 SKIAAHLPGRTDNEIKNYWNTHIKKKLKRMGIDPVT 463
>gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB633 3' end, mRNA sequence
Length = 786
Score = 157 bits (338), Expect(2) = 1e-050
Identities = 60/89 (67%), Positives = 70/89 (78%)
Frame = +2 / +1
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
EMGR CC K L+KG W+ EED+KL++ I HGH CW +VPKLAGL RCGKSCRLRW N
Sbjct: 25 EMGRQPCCDKVGLKKGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTN 204
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG ++ EE LII+LH+ LGNR
Sbjct: 205 YLRPDLKRGLLSESEEQLIIDLHSQLGNR 291
Score = 62.5 bits (130), Expect(2) = 1e-050
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IAA LPGRTDNEIKN WN+ IK L++ GIDP T
Sbjct: 295 SKIAAHLPGRTDNEIKNYWNTHIKKKLKRMGIDPVT 402
>gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (MYB4) mRNA, complete cds
Length = 945
Score = 162 bits (349), Expect(2) = 2e-050
Identities = 64/93 (68%), Positives = 73/93 (78%)
Frame = +2 / +1
Query: 269 LHCVEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRL 448
+ C G S K KLRKGLWSPEED+KL+N++ K+G GCWS V K AGLQRCGKSCRL
Sbjct: 1 MSCTTGGLSSPVSKPKLRKGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRL 180
Query: 449 RWINYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
RWINYLRPDLKRGAF+ EE II LH++LGNR
Sbjct: 181 RWINYLRPDLKRGAFSPQEEHWIIHLHSILGNR 279
Score = 82.6 bits (174), Expect(2) = 7e-021
Identities = 36/60 (60%), Positives = 38/60 (63%)
Frame = -1 / -2
Query: 546 LFPRTACXXXXXXXXSWANAPLLRSGLR*FIHLSLQLFPHL*SPASLGTELQQPWPCFVM 367
L PR C NAP LRSGL+* IHLSLQLFPHL PA L T LQQPWP F+M
Sbjct: 278 LLPRMECKCMIQCSSWGENAPRLRSGLK*LIHLSLQLFPHLCRPACLATSLQQPWPFFIM 99
Score = 56.5 bits (117), Expect(2) = 2e-050
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
SQIAA+LPGRTDNEIKN WNS IK L+ N ++
Sbjct: 283 SQIAARLPGRTDNEIKNFWNSCIKKKLKHLSASTNNSKSIS 405
Score = 37.7 bits (76), Expect(2) = 7e-021
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = -1 / -2
Query: 639 CLXXXLMXEFHRFLISLSVLPGSCAAI*XXXL 544
C M EF +FLISLSV PG+ AAI* L
Sbjct: 368 CFNFFFMQEFQKFLISLSVRPGNRAAI*DHLL 273
>gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 5', mRNA sequence
Length = 729
Score = 156 bits (336), Expect(2) = 4e-049
Identities = 59/89 (66%), Positives = 69/89 (77%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
EMGR CC K KG W+ EED +L+ HI HG G W S+PK AGL RCGKSCRLRWIN
Sbjct: 11 EMGRSPCCEKAHTNKGAWTKEEDRRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWIN 190
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG F ++E++LII+LHAVLGN+
Sbjct: 191 YLRPDLKRGGFTEEEDELIIKLHAVLGNK 277
Score = 58.3 bits (121), Expect(2) = 4e-049
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +L GRTDNEIKN WNS IK L KG+DP T
Sbjct: 281 SLIAGRLAGRTDNEIKNYWNSHIKKKLLSKGLDPKT 388
>gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_G10_A029 5', mRNA sequence
Length = 805
Score = 153 bits (328), Expect(2) = 1e-048
Identities = 55/91 (60%), Positives = 71/91 (78%)
Frame = +2 / +1
Query: 275 CVEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRW 454
C +MGR CC K KG W+ +ED++L+ HI HG G W S+PK AGL RCGKSCRLRW
Sbjct: 13 CEKMGRSPCCEKAHTNKGAWTKQEDDRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRW 192
Query: 455 INYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
INYLRPDLKRG+F ++E++LII+LH+ +GN+
Sbjct: 193 INYLRPDLKRGSFTEEEDELIIKLHSFVGNK 285
Score = 60.6 bits (126), Expect(2) = 1e-048
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KG+DP T
Sbjct: 289 SLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGLDPQT 396
>gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18F02, mRNA sequence
Length = 578
Score = 151 bits (325), Expect(2) = 4e-048
Identities = 56/89 (62%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K KG WS +EDE L+ +I HG G W S+PK AGLQRCGKSCRLRWIN
Sbjct: 14 QMGRAPCCEKTHTNKGAWSKDEDEALVAYIQAHGEGSWRSLPKAAGLQRCGKSCRLRWIN 193
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG F+ +E+++II+LH++LGN+
Sbjct: 194 YLRPDLKRGNFSPEEDEIIIKLHSMLGNK 280
Score = 60.2 bits (125), Expect(2) = 4e-048
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA++LPGRTDNEIKN WN+ IK + ++G+DP+T
Sbjct: 284 SLIASKLPGRTDNEIKNYWNTHIKRKMLERGLDPST 391
>gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D10_A029 5', mRNA sequence
Length = 766
Score = 150 bits (323), Expect(2) = 5e-048
Identities = 54/89 (60%), Positives = 70/89 (78%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K KG W+ +ED++L+ HI HG G W S+PK AGL RCGKSCRLRWIN
Sbjct: 18 KMGRSPCCEKAHTNKGAWTKQEDDRLIAHIRAHGEGSWRSLPKAAGLLRCGKSCRLRWIN 197
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG+F ++E++LII+LH+ +GN+
Sbjct: 198 YLRPDLKRGSFTEEEDELIIKLHSFVGNK 284
Score = 60.6 bits (126), Expect(2) = 5e-048
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KG+DP T
Sbjct: 288 SLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGLDPQT 395
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 152 bits (327), Expect(2) = 5e-047
Identities = 57/88 (64%), Positives = 69/88 (78%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K L+KG W+PEED+KL+ +I +HGHG W ++P+ AGL RCGKSCRLRW NY
Sbjct: 99 MGRAPCCEKVGLKKGPWTPEEDQKLLAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWTNY 278
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPD+KRG F EE II+LHA+LGNR
Sbjct: 279 LRPDIKRGKFNPQEEQTIIQLHALLGNR 362
Score = 55.6 bits (115), Expect(2) = 5e-047
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S I QLP RTDNEIKN WN+ +K L Q GIDP T
Sbjct: 366 STITTQLPKRTDNEIKNYWNTHLKKRLVQMGIDPMT 473
>gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_B11_A029 3', mRNA sequence
Length = 781
Score = 148 bits (318), Expect(2) = 1e-046
Identities = 54/90 (60%), Positives = 71/90 (78%)
Frame = +2 / -3
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
++MGR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWI
Sbjct: 773 MKMGRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWI 594
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 593 NYLRPDLKRGSFTEEEDELIIKLHSVVGNK 504
Score = 58.3 bits (121), Expect(2) = 1e-046
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / -3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 500 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 393
>gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_A10_A021 5', mRNA
sequence
Length = 760
Score = 148 bits (318), Expect(2) = 1e-046
Identities = 54/90 (60%), Positives = 71/90 (78%)
Frame = +2 / +1
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
++MGR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWI
Sbjct: 19 MKMGRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWI 198
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 199 NYLRPDLKRGSFTEEEDELIIKLHSVVGNK 288
Score = 58.3 bits (121), Expect(2) = 1e-046
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 292 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 399
>gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_17_F02_A029 5', mRNA sequence
Length = 630
Score = 148 bits (318), Expect(2) = 1e-046
Identities = 54/90 (60%), Positives = 71/90 (78%)
Frame = +2 / +2
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
++MGR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWI
Sbjct: 5 MKMGRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWI 184
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 185 NYLRPDLKRGSFTEEEDELIIKLHSVVGNK 274
Score = 58.3 bits (121), Expect(2) = 1e-046
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 278 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 385
>gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_A11_A029 3', mRNA sequence
Length = 796
Score = 148 bits (317), Expect(2) = 2e-046
Identities = 54/89 (60%), Positives = 70/89 (78%)
Frame = +2 / -3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWIN
Sbjct: 794 KMGRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWIN 615
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 614 YLRPDLKRGSFTEEEDELIIKLHSVVGNK 528
Score = 58.3 bits (121), Expect(2) = 2e-046
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / -3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 524 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 417
>gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 5', mRNA sequence
Length = 734
Score = 147 bits (316), Expect(2) = 2e-046
Identities = 54/88 (61%), Positives = 69/88 (78%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWINY
Sbjct: 2 MGRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWINY 181
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 182 LRPDLKRGSFTEEEDELIIKLHSVVGNK 265
Score = 58.3 bits (121), Expect(2) = 2e-046
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 269 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 376
>gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_46_B11_A029 5', mRNA sequence
Length = 834
Score = 148 bits (318), Expect(2) = 8e-046
Identities = 54/90 (60%), Positives = 71/90 (78%)
Frame = +2 / +3
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
++MGR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWI
Sbjct: 36 MKMGRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWI 215
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 216 NYLRPDLKRGSFTEEEDELIIKLHSVVGNK 305
Score = 55.6 bits (115), Expect(2) = 8e-046
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGR DNEIKN WN+ IK L KGIDP +
Sbjct: 309 SLIAGRLPGRMDNEIKNYWNTHIKRKLLIKGIDPQS 416
>gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_H12_A029 5', mRNA sequence
Length = 600
Score = 145 bits (311), Expect(2) = 1e-045
Identities = 53/87 (60%), Positives = 68/87 (78%)
Frame = +2 / +3
Query: 287 GRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 466
GR CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWINYL
Sbjct: 6 GRSPCCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWINYL 185
Query: 467 RPDLKRGAFAQDEEDLIIELHAVLGNR 547
RPDLKRG+F ++E++LII+LH+V+GN+
Sbjct: 186 RPDLKRGSFTEEEDELIIKLHSVVGNK 266
Score = 58.3 bits (121), Expect(2) = 1e-045
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 270 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 377
>gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL85 3' end, mRNA sequence
Length = 812
Score = 133 bits (284), Expect(2) = 1e-045
Identities = 50/67 (74%), Positives = 55/67 (82%)
Frame = +2 / +1
Query: 347 DEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIEL 526
D KL+N IT HGHGCW VPKLAGL RCGKSCRLRW NYLRPDLKRG ++ EE LII+L
Sbjct: 10 DRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDL 189
Query: 527 HAVLGNR 547
HA +GNR
Sbjct: 190 HAAIGNR 210
Score = 70.3 bits (147), Expect(2) = 1e-045
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
S+IAAQLPGRTDNEIKN WN+ IK LRQ GIDP T LT
Sbjct: 214 SRIAAQLPGRTDNEIKNYWNTRIKKKLRQMGIDPVTHKPLT 336
>gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEF89 3' end, mRNA sequence
Length = 790
Score = 133 bits (284), Expect(2) = 1e-045
Identities = 50/67 (74%), Positives = 55/67 (82%)
Frame = +2 / +2
Query: 347 DEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIEL 526
D KL+N IT HGHGCW VPKLAGL RCGKSCRLRW NYLRPDLKRG ++ EE LII+L
Sbjct: 2 DRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDL 181
Query: 527 HAVLGNR 547
HA +GNR
Sbjct: 182 HAAIGNR 202
Score = 70.3 bits (147), Expect(2) = 1e-045
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
S+IAAQLPGRTDNEIKN WN+ IK LRQ GIDP T LT
Sbjct: 206 SRIAAQLPGRTDNEIKNYWNTRIKKKLRQMGIDPVTHKPLT 328
>gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B07_A029 5', mRNA sequence
Length = 928
Score = 148 bits (317), Expect(2) = 7e-045
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +2 / +1
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
V+MGR CC K KG W+ EED +L+ HI HG G W S+PK AGL RCGKSCRLRWI
Sbjct: 31 VKMGRTPCCEKAHTNKGAWTQEEDARLVAHIQAHGEGGWRSLPKAAGLLRCGKSCRLRWI 210
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG F++ E++LII+ H+ LGN+
Sbjct: 211 NYLRPDLKRGNFSEQEDELIIKFHSRLGNK 300
Score = 52.8 bits (109), Expect(2) = 7e-045
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA LPGRTDNEIKN WN+ IK L + G+DP +
Sbjct: 304 SLIARILPGRTDNEIKNHWNTHIKKKLVRMGLDPKS 411
>gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_G04_A029 5', mRNA sequence
Length = 871
Score = 143 bits (306), Expect(2) = 2e-044
Identities = 56/88 (63%), Positives = 64/88 (72%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K L KG WS EED L +I HG G W S+PK AGL+RCGKSCRLRW+NY
Sbjct: 3 MGRAPCCTKVGLNKGAWSAEEDSLLGKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNY 182
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRP +KRG DEE+LII +HA+LGNR
Sbjct: 183 LRPCIKRGNITTDEEELIIRMHALLGNR 266
Score = 56.5 bits (117), Expect(2) = 2e-044
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
S IA ++PGRTDNEIKN WN+ + L +GIDP T +T
Sbjct: 270 SIIAGRVPGRTDNEIKNYWNTNLSKKLAVRGIDPKTHKKIT 392
>gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C05_A015 5', mRNA sequence
Length = 792
Score = 141 bits (302), Expect(2) = 2e-044
Identities = 51/83 (61%), Positives = 66/83 (79%)
Frame = +2 / +3
Query: 299 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 478
CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 9 CCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWINYLRPDL 188
Query: 479 KRGAFAQDEEDLIIELHAVLGNR 547
KRG+F ++E++LII+LH+V+GN+
Sbjct: 189 KRGSFTEEEDELIIKLHSVVGNK 257
Score = 58.3 bits (121), Expect(2) = 2e-044
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 261 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 368
>gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_C01_A029 5', mRNA sequence
Length = 719
Score = 141 bits (302), Expect(2) = 2e-044
Identities = 51/83 (61%), Positives = 66/83 (79%)
Frame = +2 / +1
Query: 299 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 478
CC K KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 4 CCEKAHTNKGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWINYLRPDL 183
Query: 479 KRGAFAQDEEDLIIELHAVLGNR 547
KRG+F ++E++LII+LH+V+GN+
Sbjct: 184 KRGSFTEEEDELIIKLHSVVGNK 252
Score = 58.3 bits (121), Expect(2) = 2e-044
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 256 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 363
>gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_G11_A029 5', mRNA sequence
Length = 744
Score = 144 bits (310), Expect(2) = 6e-044
Identities = 55/88 (62%), Positives = 66/88 (75%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K KG W+ EED +L+ HI HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 3 MGRTPCC*KAHTNKGAWTQEEDARLVAHIQAHGEGGWRSLPKAAGLLRCGKSCRLRWINY 182
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F++ E++LII+ H+ LGN+
Sbjct: 183 LRPDLKRGNFSEQEDELIIKFHSRLGNK 266
Score = 52.8 bits (109), Expect(2) = 6e-044
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA LPGRTDNEIKN WN+ IK L + G+DP +
Sbjct: 270 SLIARILPGRTDNEIKNHWNTHIKKKLVRMGLDPKS 377
>gb|CF477905.1|CF477905 RTWW3_13_C03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_C03_A022 5', mRNA sequence
Length = 707
Score = 137 bits (294), Expect(2) = 9e-044
Identities = 53/89 (59%), Positives = 66/89 (74%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC + L +G W+ +ED L +I HG G WS++P+ AGL RCGKSCRLRW+N
Sbjct: 84 KMGRAPCCSQVGLLRGPWTAKEDNLLTRYIEWHGEGDWSNLPEKAGLGRCGKSCRLRWLN 263
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRP +KRG +QDEEDLII LH +LGNR
Sbjct: 264 YLRPTIKRGNISQDEEDLIIRLHRLLGNR 350
Score = 59.7 bits (124), Expect(2) = 9e-044
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WNS + LR++GIDP T
Sbjct: 354 SLIAGRLPGRTDNEIKNHWNSHLSKQLRKRGIDPLT 461
>gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_C02 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 549
Score = 148 bits (317), Expect(2) = 9e-044
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +2 / +2
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
V+MGR CC K KG W+ EED +L+ HI HG G W S+PK AGL RCGKSCRLRWI
Sbjct: 20 VKMGRTPCCEKAHTNKGAWTQEEDARLVAHIQAHGEGGWRSLPKAAGLLRCGKSCRLRWI 199
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG F++ E++LII+ H+ LGN+
Sbjct: 200 NYLRPDLKRGNFSEQEDELIIKFHSRLGNK 289
Score = 49.2 bits (101), Expect(2) = 9e-044
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGID 652
S IA LPGRTDNEIKN WN+ IK L + G+D
Sbjct: 293 SLIARILPGRTDNEIKNHWNTHIKKKLVRMGLD 391
>gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B09_A029 3', mRNA sequence
Length = 904
Score = 138 bits (295), Expect(2) = 1e-043
Identities = 51/77 (66%), Positives = 62/77 (80%)
Frame = +2 / -1
Query: 317 LRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFA 496
L+KG W+PEED+ L+++I KHGHG W ++PK AGL RCGKSCRLRW NYLRPD+KRG F+
Sbjct: 886 LKKGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFS 707
Query: 497 QDEEDLIIELHAVLGNR 547
EE II LH +LGNR
Sbjct: 706 LKEEQTIIHLHQILGNR 656
Score = 58.8 bits (122), Expect(2) = 1e-043
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +2 / -1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA+ LPGRTDNEIKN+WN+ +K L Q G+DP T
Sbjct: 652 SAIASHLPGRTDNEIKNVWNTHLKKRLLQIGVDPVT 545
>gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_D02_A029 5', mRNA sequence
Length = 557
Score = 147 bits (315), Expect(2) = 3e-043
Identities = 54/88 (61%), Positives = 71/88 (80%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K ++KG W+ +ED+ L+++ITKHGHG W ++PK AGL RCGKSCRLRW NY
Sbjct: 20 MGRAPCCDKMGVKKGPWTLDEDKILVDYITKHGHGNWRALPKQAGLLRCGKSCRLRWTNY 199
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
L+PD+KRG F+ +EED II+LH ++GNR
Sbjct: 200 LKPDIKRGNFSPEEEDQIIKLHELIGNR 283
Score = 48.3 bits (99), Expect(2) = 3e-043
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGID 652
S IA+ LPGRTDNEIKN+WN+ +K L + D
Sbjct: 287 STIASYLPGRTDNEIKNVWNTHLKKRLARMKAD 385
>gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_15_B11_A021 5', mRNA sequence
Length = 821
Score = 174 bits (375), Expect = 5e-043
Identities = 68/95 (71%), Positives = 77/95 (81%)
Frame = +2 / +1
Query: 377 HGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIELHAVLGNRXXS 556
HG GCW S+PK AGL RCGKSCRLRWINYLRPDLKRG F++DE+DLI++LHA+LGN S
Sbjct: 4 HGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGFFSEDEDDLILKLHALLGNNRWS 183
Query: 557 QIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
IA +LPGRTDNEIKN WNS +K L GIDP T
Sbjct: 184 LIAGRLPGRTDNEIKNYWNSHLKRKLISMGIDPLT 288
>gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_H05_A029 5', mRNA sequence
Length = 806
Score = 135 bits (289), Expect(2) = 8e-043
Identities = 50/75 (66%), Positives = 60/75 (80%)
Frame = +2 / +2
Query: 323 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQD 502
KG W+PEED+ L+++I KHGHG W ++PK AGL RCGKSCRLRW NYLRPD+KRG F+
Sbjct: 2 KGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFSLK 181
Query: 503 EEDLIIELHAVLGNR 547
EE II LH +LGNR
Sbjct: 182 EEQTIIHLHQILGNR 226
Score = 58.8 bits (122), Expect(2) = 8e-043
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA+ LPGRTDNEIKN+WN+ +K L Q G+DP T
Sbjct: 230 SAIASHLPGRTDNEIKNVWNTHLKKRLLQIGVDPVT 337
>gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_30_H07_A029 5', mRNA sequence
Length = 667
Score = 137 bits (294), Expect(2) = 2e-042
Identities = 53/88 (60%), Positives = 63/88 (71%)
Frame = +2 / +1
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K L +G W+PEED L N+I HG G W ++PK A L RCGKSCRLRW+NY
Sbjct: 67 MGRTPCCLKVGLNRGPWTPEEDLCLSNYIESHGEGGWRTLPKKARLLRCGKSCRLRWMNY 246
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPD+K G +EEDLI+ LH +LGNR
Sbjct: 247 LRPDVKHGHILPEEEDLILRLHRLLGNR 330
Score = 55.6 bits (115), Expect(2) = 2e-042
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXAD 685
S IA ++PGRTDNE+KN WN+ + L +GIDP T L ++
Sbjct: 334 SLIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKPLAESE 465
>gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B07_A029 3', mRNA sequence
Length = 906
Score = 139 bits (299), Expect(2) = 2e-042
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +2 / +1
Query: 299 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 478
CC K KG W+ EED +L+ HI HG G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 1 CCEKAHTNKGAWTQEEDARLVAHIQAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDL 180
Query: 479 KRGAFAQDEEDLIIELHAVLGNR 547
KRG F++ E++LII+ H+ LGN+
Sbjct: 181 KRGNFSEQEDELIIKFHSRLGNK 249
Score = 52.8 bits (109), Expect(2) = 2e-042
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA LPGRTDNEIKN WN+ IK L + G+DP +
Sbjct: 253 SLIARILPGRTDNEIKNHWNTHIKKKLVRMGLDPKS 360
>gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_E03_A034 5', mRNA sequence
Length = 724
Score = 139 bits (299), Expect(2) = 2e-042
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +2 / +1
Query: 299 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 478
CC K KG W+ EED +L+ HI HG G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 1 CCEKAHTNKGAWTQEEDARLVAHIQAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDL 180
Query: 479 KRGAFAQDEEDLIIELHAVLGNR 547
KRG F++ E++LII+ H+ LGN+
Sbjct: 181 KRGNFSEQEDELIIKFHSRLGNK 249
Score = 52.8 bits (109), Expect(2) = 2e-042
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA LPGRTDNEIKN WN+ IK L + G+DP +
Sbjct: 253 SLIARILPGRTDNEIKNHWNTHIKKKLVRMGLDPKS 360
>gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 5', mRNA sequence
Length = 849
Score = 133 bits (284), Expect(2) = 5e-042
Identities = 48/75 (64%), Positives = 63/75 (84%)
Frame = +2 / +1
Query: 323 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQD 502
KG W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWINYLRPDLKRG+F ++
Sbjct: 1 KGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWINYLRPDLKRGSFTEE 180
Query: 503 EEDLIIELHAVLGNR 547
E++LII+LH+V+GN+
Sbjct: 181 EDELIIKLHSVVGNK 225
Score = 58.3 bits (121), Expect(2) = 5e-042
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 229 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 336
>gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_D03_A029 5', mRNA sequence
Length = 693
Score = 143 bits (307), Expect(2) = 7e-042
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2 / +3
Query: 299 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 478
CC K ++KG W+ +ED+ L+++ITKHGHG W ++PK AGL RCGKSCRLRW NYLRPD+
Sbjct: 57 CCDKMGVKKGAWTLDEDKILVDYITKHGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDI 236
Query: 479 KRGAFAQDEEDLIIELHAVLGNR 547
KRG F+ +EED II+LH ++GNR
Sbjct: 237 KRGNFSPEEEDQIIKLHELIGNR 305
Score = 47.3 bits (97), Expect(2) = 7e-042
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXL 634
S IA+ LPGRTDNEIKN+WN+ +K L
Sbjct: 309 STIASYLPGRTDNEIKNVWNTHLKKRL 389
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 161 bits (346), Expect(2) = 1e-041
Identities = 58/97 (59%), Positives = 75/97 (77%)
Frame = +2 / +2
Query: 257 SSQVLHCVEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGK 436
+S + CV+MGR CC K KG W+ EED+ L+ HI HG GCW S+PK AGL RCGK
Sbjct: 23 ASLICLCVKMGRSPCCEKAHTNKGAWTKEEDDHLIAHIRAHGEGCWRSLPKAAGLLRCGK 202
Query: 437 SCRLRWINYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
SCRLRWINYLRPD+KRG F+ +E++LII+LH+++GN+
Sbjct: 203 SCRLRWINYLRPDIKRGNFSSEEDELIIQLHSLIGNK 313
Score = 28.6 bits (56), Expect(2) = 1e-041
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1 / +1
Query: 544 QXXXSNCSAAARED***DQESMELXHQ 624
Q S+CS AR D DQE +EL HQ
Sbjct: 307 QQVVSDCSKIARTDGQRDQELLELPHQ 387
>gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 5', mRNA sequence
Length = 868
Score = 130 bits (279), Expect(2) = 3e-041
Identities = 47/74 (63%), Positives = 62/74 (83%)
Frame = +2 / +3
Query: 326 GLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDE 505
G W+ EED +L+ +I +G G W S+PK AGL RCGKSCRLRWINYLRPDLKRG+F ++E
Sbjct: 48 GAWTKEEDHRLIAYIRANGEGSWRSLPKAAGLPRCGKSCRLRWINYLRPDLKRGSFTEEE 227
Query: 506 EDLIIELHAVLGNR 547
++LII+LH+V+GN+
Sbjct: 228 DELIIKLHSVVGNK 269
Score = 58.3 bits (121), Expect(2) = 3e-041
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 273 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 380
>gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_C09_A029 5', mRNA sequence
Length = 850
Score = 142 bits (304), Expect(2) = 3e-041
Identities = 54/89 (60%), Positives = 65/89 (73%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC KQ L +G W+ EED L +I HG G W +P+ AGL RCGKSCRLRW+N
Sbjct: 33 KMGRSPCCSKQGLNRGAWTKEEDMILSTYIQIHGDGGWKILPQKAGLNRCGKSCRLRWMN 212
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG + DEEDLII +H +LGNR
Sbjct: 213 YLRPDIKRGRISADEEDLIIRMHRLLGNR 299
Score = 46.4 bits (95), Expect(2) = 3e-041
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLR 637
S IA +LPGRTDNEIKN WN+ + LR
Sbjct: 303 SLIAGRLPGRTDNEIKNYWNTQLSKKLR 386
>gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 5', mRNA sequence
Length = 887
Score = 129 bits (277), Expect(2) = 5e-041
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = +2 / +3
Query: 323 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQD 502
KG W+ EED +L+ +I +G G W S+PK AG RCGKSCRLRWINYLRPDLKRG+F ++
Sbjct: 33 KGAWTKEEDHRLIAYIRANGEGSWRSLPKAAGPPRCGKSCRLRWINYLRPDLKRGSFTEE 212
Query: 503 EEDLIIELHAVLGNR 547
E++LII+LH+V+GN+
Sbjct: 213 EDELIIKLHSVVGNK 257
Score = 58.3 bits (121), Expect(2) = 5e-041
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA +LPGRTDNEIKN WN+ IK L KGIDP +
Sbjct: 261 SLIAGRLPGRTDNEIKNYWNTHIKRKLLIKGIDPQS 368
>gb|CF475091.1|CF475091 RTWW2_5_F10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_F10_A021 5', mRNA sequence
Length = 707
Score = 144 bits (309), Expect(2) = 5e-041
Identities = 52/88 (59%), Positives = 69/88 (78%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K ++KG W+P+ED+ L+++I HGH W ++PK AGL RCGKSCRLRW NY
Sbjct: 11 MGRAPCCDKMAVKKGPWTPDEDKLLVDYINNHGHSNWRALPKQAGLLRCGKSCRLRWTNY 190
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRP++KRG F+ +EED II+LH ++GNR
Sbjct: 191 LRPNIKRGNFSPEEEDQIIKLHELIGNR 274
Score = 45.5 bits (93), Expect(2) = 5e-041
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXL 634
S IA+ LPGRTDNEIKN+W++ +K L
Sbjct: 436 STIASHLPGRTDNEIKNVWSTRLKKRL 516
>gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_D09_A029 5', mRNA sequence
Length = 842
Score = 129 bits (277), Expect(2) = 1e-040
Identities = 48/76 (63%), Positives = 61/76 (80%)
Frame = +2 / +1
Query: 320 RKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQ 499
++G W+ EED+KL+N++ HG W S+PKLAGL RCGKSCRLRW NYLRPD+KRG F+
Sbjct: 52 KRGPWTAEEDQKLINYLQHHGRTKWRSLPKLAGLSRCGKSCRLRWTNYLRPDIKRGNFSI 231
Query: 500 DEEDLIIELHAVLGNR 547
E+ +II LHA+LGNR
Sbjct: 232 HEDIVIIHLHAILGNR 279
Score = 57.0 bits (118), Expect(2) = 1e-040
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXA 682
S IA+ LPGRTDNEIKN WN+ +K L GIDP T L A
Sbjct: 283 SAIASHLPGRTDNEIKNHWNTRLKRQLPVMGIDPVTHSLLPVA 411
>gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_8_C03_A029 5', mRNA sequence
Length = 538
Score = 145 bits (311), Expect(2) = 2e-040
Identities = 57/89 (64%), Positives = 65/89 (73%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
EMGR CC K L KG WS EED L +I HG G W S+PK AGL+RCGKSCRLRW+N
Sbjct: 194 EMGRAPCCTKVGLNKGAWSAEEDSLLGKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLN 373
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRP +KRG DEE+LII +HA+LGNR
Sbjct: 374 YLRPCIKRGNITTDEEELIIRMHALLGNR 460
Score = 40.9 bits (83), Expect(2) = 2e-040
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXI 622
S IA ++PGRTDNE+KN WN+ +
Sbjct: 464 SIIAGRVPGRTDNEVKNYWNTNL 532
>gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_H06_A029 5', mRNA sequence
Length = 820
Score = 144 bits (309), Expect(2) = 2e-040
Identities = 56/89 (62%), Positives = 67/89 (75%)
Frame = +2 / +1
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC KQ L +G W PEED L ++I HG G W +P+ AGLQRCGKSCRLRWIN
Sbjct: 43 KMGRAPCCSKQGLNQGPWKPEEDMILCDYIRIHGPGRWRDLPQKAGLQRCGKSCRLRWIN 222
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG + DEED+II +H +LGNR
Sbjct: 223 YLRPDVKRGNISIDEEDVIIRMHRLLGNR 309
Score = 41.4 bits (84), Expect(2) = 2e-040
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWN 613
S IA +LPGRTDNEIKN WN
Sbjct: 313 SLIAGRLPGRTDNEIKNHWN 372
>gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_H06_A029 5', mRNA sequence
Length = 739
Score = 144 bits (309), Expect(2) = 2e-040
Identities = 56/89 (62%), Positives = 67/89 (75%)
Frame = +2 / +1
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC KQ L +G W PEED L ++I HG G W +P+ AGLQRCGKSCRLRWIN
Sbjct: 43 KMGRAPCCSKQGLNQGPWKPEEDMILCDYIRIHGPGRWRDLPQKAGLQRCGKSCRLRWIN 222
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG + DEED+II +H +LGNR
Sbjct: 223 YLRPDVKRGNISIDEEDVIIRMHRLLGNR 309
Score = 41.4 bits (84), Expect(2) = 2e-040
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWN 613
S IA +LPGRTDNEIKN WN
Sbjct: 313 SLIAGRLPGRTDNEIKNHWN 372
>gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_C05 5' similar to Arabidopsis
thaliana sequence At1g63910 putative MYB family
transcription factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 296
Score = 165 bits (355), Expect = 3e-040
Identities = 59/89 (66%), Positives = 75/89 (84%)
Frame = +2 / +3
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
+ MGRH CC +QK+++GLWSP+EDEKL+N+ITK+G+GCWS VP+ +GLQRCGKSCRLRWI
Sbjct: 6 IAMGRHLCCNQQKVKRGLWSPDEDEKLINYITKYGYGCWSEVPEKSGLQRCGKSCRLRWI 185
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGN 544
NYLRPD+ G F+ +EE LII LH + N
Sbjct: 186 NYLRPDIXXGNFSPNEEKLIIHLHTMXXN 272
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 354,029,919
Number of Sequences: 355925
Number of extensions: 4939805
Number of successful extensions: 47374
Number of sequences better than 1.0e-020: 195
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9489505520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)