TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR116719.1|DR116719 RTMG1_2_H06.b1_A029 Roots minus magn... 113 2e-037
gb|DR116804.1|DR116804 RTMG1_2_H06.g1_A029 Roots minus magn... 113 2e-037
gb|DR695125.1|DR695125 EST1085218 Normalized pine embryo li... 113 2e-037
gb|DR078300.1|DR078300 RTFEPL1_3_E07.b1_A029 Roots plus add... 113 2e-037
gb|DR012004.1|DR012004 HEAT1_9_A04.g1_A029 Root at 37 C for... 113 2e-037
gb|CX652552.1|CX652552 COLD1_59_G09.g1_A029 Root cold Pinus... 113 2e-037
gb|DT638590.1|DT638590 EST1153521 Normalized pine embryo li... 113 5e-037
gb|DT631539.1|DT631539 EST1146470 Normalized pine embryo li... 113 5e-037
gb|DR683816.1|DR683816 EST1073892 Normalized pine embryo li... 113 5e-037
gb|DR081137.1|DR081137 RTFEPL1_27_E02.g1_A029 Roots plus ad... 111 1e-036
gb|DR015870.1|DR015870 STRS1_6_E08.b1_A034 Shoot tip pitch ... 113 9e-036
gb|DR047460.1|DR047460 RTBOR1_1_E07.b1_A029 Roots plus adde... 113 9e-036
gb|DR694258.1|DR694258 EST1084349 Normalized pine embryo li... 113 9e-036
gb|CF390163.1|CF390163 RTDR2_12_E06.g1_A021 Loblolly pine r... 113 9e-036
gb|DR015949.1|DR015949 STRS1_6_E08.g1_A034 Shoot tip pitch ... 105 6e-035
gb|DR109623.1|DR109623 RTS1_3_C05.g1_A029 Roots minus sulfu... 113 5e-034
gb|DR168155.1|DR168155 RTPHOS1_23_C06.g1_A029 Roots minus p... 113 2e-033
gb|CO199718.1|CO199718 GEO2_3_C05.b1_A032 Root gravitropism... 141 4e-033
gb|CX653292.1|CX653292 COLD1_64_D11.g1_A029 Root cold Pinus... 113 7e-033
gb|DR023499.1|DR023499 STRS1_58_C09.b1_A034 Shoot tip pitch... 105 2e-032
gb|DR118198.1|DR118198 RTMG1_11_F01.g1_A029 Roots minus mag... 105 2e-032
gb|DR069276.1|DR069276 RTDK1_6_D02.b1_A029 Roots, dark Pinu... 105 3e-032
gb|DR116628.1|DR116628 RTMG1_1_F07.g1_A029 Roots minus magn... 105 3e-032
gb|DR167536.1|DR167536 RTPHOS1_19_A09.g1_A029 Roots minus p... 105 3e-032
gb|DR385412.1|DR385412 RTHG1_8_B08.g1_A029 Roots plus added... 105 3e-032
gb|CO367617.1|CO367617 RTK1_35_A06.g1_A029 Roots minus pota... 105 3e-032
gb|CO362139.1|CO362139 RTK1_1_B11.g1_A029 Roots minus potas... 105 3e-032
gb|CV034443.1|CV034443 RTNACL1_9_A04.b1_A029 Roots plus add... 105 3e-032
gb|CF669591.1|CF669591 RTCNT1_44_H07.g1_A029 Root control P... 105 3e-032
gb|CF664880.1|CF664880 RTCNT1_12_B07.g1_A029 Root control P... 105 3e-032
gb|CF391557.1|CF391557 RTDR3_9_D03.g1_A022 Loblolly pine ro... 105 3e-032
gb|CF672019.1|CF672019 RTCNT1_60_F11.g1_A029 Root control P... 105 3e-032
gb|DR019386.1|DR019386 STRS1_29_E03.g1_A034 Shoot tip pitch... 105 3e-032
gb|DR119006.1|DR119006 RTMG1_20_C03.g1_A029 Roots minus mag... 105 3e-032
gb|BX254534.1|BX254534 BX254534 Pinus pinaster differenciat... 105 3e-032
gb|CF475902.1|CF475902 RTWW2_15_G09.g1_A021 Well-watered lo... 105 3e-032
gb|BX250310.1|BX250310 BX250310 Pinus pinaster differenciat... 105 3e-032
gb|CF395152.1|CF395152 RTDS2_10_E11.b1_A021 Drought-stresse... 105 3e-032
gb|DR020571.1|DR020571 STRS1_37_H07.g1_A034 Shoot tip pitch... 105 3e-032
gb|DR745694.1|DR745694 RTCU1_31_E05.g1_A029 Roots plus adde... 105 3e-032
gb|CX648436.1|CX648436 COLD1_28_D09.g1_A029 Root cold Pinus... 104 4e-032
gb|CO163300.1|CO163300 FLD1_40_E10.g1_A029 Root flooded Pin... 103 1e-031
gb|CF478208.1|CF478208 RTWW3_19_E07.g1_A022 Well-watered lo... 103 1e-031
gb|DT638133.1|DT638133 EST1153064 Normalized pine embryo li... 105 2e-031
gb|DR693161.1|DR693161 EST1083249 Normalized pine embryo li... 105 2e-031
gb|BQ698981.1|BQ698981 NXRV117_H02_F NXRV (Nsf Xylem Root w... 105 2e-031
gb|BX678795.1|BX678795 BX678795 RS Pinus pinaster cDNA clon... 101 3e-031
gb|BE644138.1|BE644138 NXCI_054_H09_F NXCI (Nsf Xylem Compr... 113 4e-031
gb|CF671501.1|CF671501 RTCNT1_57_B07.g1_A029 Root control P... 101 4e-031
gb|DR109640.1|DR109640 RTS1_3_E07.g1_A029 Roots minus sulfu... 101 4e-031
gb|BX678800.1|BX678800 BX678800 RS Pinus pinaster cDNA clon... 101 4e-031
gb|DR694175.1|DR694175 EST1084265 Normalized pine embryo li... 102 5e-031
gb|DT638620.1|DT638620 EST1153551 Normalized pine embryo li... 102 5e-031
gb|CO368683.1|CO368683 RTK1_42_D09.b1_A029 Roots minus pota... 103 5e-030
gb|CO163161.1|CO163161 FLD1_39_G12.g1_A029 Root flooded Pin... 103 5e-030
gb|CV035130.1|CV035130 RTNACL1_13_F12.g1_A029 Roots plus ad... 103 5e-030
gb|DR011028.1|DR011028 HEAT1_2_H06.g1_A029 Root at 37 C for... 103 5e-030
gb|CF477204.1|CF477204 RTWW3_6_C08.g1_A022 Well-watered lob... 103 5e-030
gb|CO368907.1|CO368907 RTK1_43_D10.g1_A029 Roots minus pota... 103 5e-030
gb|DR743246.1|DR743246 RTCU1_14_C05.g1_A029 Roots plus adde... 103 5e-030
gb|BE520108.1|BE520108 NXCI_016_H09_F NXCI (Nsf Xylem Compr... 103 9e-030
gb|BX679950.1|BX679950 BX679950 RS Pinus pinaster cDNA clon... 96 2e-029
gb|DR072364.1|DR072364 RTDK1_25_G03.g1_A029 Roots, dark Pin... 105 3e-029
gb|CO160922.1|CO160922 FLD1_25_B04.g1_A029 Root flooded Pin... 105 4e-029
gb|AW869996.1|AW869996 NXNV_120_G12_F Nsf Xylem Normal wood... 95 1e-027
gb|BF220863.1|BF220863 NXCI_155_A01_F NXCI (Nsf Xylem Compr... 103 3e-027
gb|CX651270.1|CX651270 COLD1_51_F10.b1_A029 Root cold Pinus... 96 4e-027
gb|CF389446.1|CF389446 RTDR2_7_D03.g1_A021 Loblolly pine ro... 113 5e-027
gb|BF518065.1|BF518065 NXSI_030_E12_F NXSI (Nsf Xylem Side ... 93 7e-027
gb|CF672139.1|CF672139 RTCNT1_61_D05.g1_A029 Root control P... 90 3e-026
gb|BX678836.1|BX678836 BX678836 RS Pinus pinaster cDNA clon... 57 4e-026
gb|BF518064.1|BF518064 NXSI_030_E11_F NXSI (Nsf Xylem Side ... 93 6e-026
gb|BQ700392.1|BQ700392 NXRV105_A11_F NXRV (Nsf Xylem Root w... 105 1e-025
gb|BE496519.1|BE496519 NXCI_020_A11_F NXCI (Nsf Xylem Compr... 86 3e-025
gb|BX250799.1|BX250799 BX250799 Pinus pinaster differenciat... 113 9e-025
gb|CO159320.1|CO159320 FLD1_12_H01.g1_A029 Root flooded Pin... 113 9e-025
gb|DR744517.1|DR744517 RTCU1_23_B05.b1_A029 Roots plus adde... 66 3e-023
gb|DR078368.1|DR078368 RTFEPL1_3_E07.g1_A029 Roots plus add... 66 3e-023
gb|BX681492.1|BX681492 BX681492 RS Pinus pinaster cDNA clon... 74 4e-023
gb|BQ701711.1|BQ701711 NXSI_118_G02_F NXSI (Nsf Xylem Side ... 107 6e-023
gb|BM903420.1|BM903420 NXRV_041_C08_F NXRV (Nsf Xylem Root ... 79 1e-022
gb|DR078441.1|DR078441 RTFEPL1_4_E07.b1_A029 Roots plus add... 105 3e-022
gb|AA556813.1|AA556813 655 Loblolly pine C Pinus taeda cDNA... 78 5e-022
>gb|DR116719.1|DR116719 RTMG1_2_H06.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_H06_A029 3', mRNA sequence
Length = 846
Score = 113 bits (241), Expect(2) = 2e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 85 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 264
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 265 HFDQLFRESGNFNKNF 312
Score = 62.0 bits (129), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 358 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 498
>gb|DR116804.1|DR116804 RTMG1_2_H06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_H06_A029 5', mRNA sequence
Length = 838
Score = 113 bits (241), Expect(2) = 2e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 354 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 533
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 534 HFDQLFRESGNFNKNF 581
Score = 62.0 bits (129), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 627 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 767
>gb|DR695125.1|DR695125 EST1085218 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK79 3' end, mRNA sequence
Length = 820
Score = 113 bits (241), Expect(2) = 2e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 183 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 362
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 363 HFDQLFRESGNFNKNF 410
Score = 62.0 bits (129), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 456 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 596
>gb|DR078300.1|DR078300 RTFEPL1_3_E07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_E07_A029 3', mRNA sequence
Length = 783
Score = 113 bits (241), Expect(2) = 2e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / -2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 581 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 402
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 401 HFDQLFRESGNFNKNF 354
Score = 62.0 bits (129), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / -2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 308 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 168
>gb|DR012004.1|DR012004 HEAT1_9_A04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_9_A04_A029 5', mRNA sequence
Length = 663
Score = 113 bits (241), Expect(2) = 2e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 135 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 314
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 315 HFDQLFRESGNFNKNF 362
Score = 62.0 bits (129), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 408 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 548
>gb|CX652552.1|CX652552 COLD1_59_G09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_G09_A029 5', mRNA sequence
Length = 542
Score = 113 bits (241), Expect(2) = 2e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 33 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 212
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 213 HFDQLFRESGNFNKNF 260
Score = 62.0 bits (129), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 306 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 446
>gb|DT638590.1|DT638590 EST1153521 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH03 3' end, mRNA sequence
Length = 841
Score = 113 bits (241), Expect(2) = 5e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 372 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 551
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 552 HFDQLFRESGNFNKNF 599
Score = 60.6 bits (126), Expect(2) = 5e-037
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK CS
Sbjct: 645 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFTCS 785
>gb|DT631539.1|DT631539 EST1146470 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF984 3' end, mRNA sequence
Length = 815
Score = 113 bits (241), Expect(2) = 5e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 313 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 492
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 493 HFDQLFRESGNFNKNF 540
Score = 60.6 bits (126), Expect(2) = 5e-037
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK CS
Sbjct: 586 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFTCS 726
>gb|DR683816.1|DR683816 EST1073892 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL61 3' end, mRNA sequence
Length = 803
Score = 113 bits (241), Expect(2) = 5e-037
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 305 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 484
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 485 HFDQLFRESGNFNKNF 532
Score = 60.6 bits (126), Expect(2) = 5e-037
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK CS
Sbjct: 578 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFMCS 718
>gb|DR081137.1|DR081137 RTFEPL1_27_E02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_27_E02_A029 5', mRNA sequence
Length = 821
Score = 111 bits (236), Expect(2) = 1e-036
Identities = 39/75 (52%), Positives = 51/75 (68%)
Frame = +2 / -3
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK H
Sbjct: 819 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 640
Query: 254 FEQLFKXTGSFSKNF 298
F+QLF+ +G+F+KNF
Sbjct: 639 FDQLFRESGNFNKNF 595
Score = 62.0 bits (129), Expect(2) = 1e-036
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / -3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 549 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 409
>gb|DR015870.1|DR015870 STRS1_6_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_E08_A034 3', mRNA sequence
Length = 880
Score = 113 bits (241), Expect(2) = 9e-036
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / -3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 407 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 228
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 227 HFDQLFRESGNFNKNF 180
Score = 56.5 bits (117), Expect(2) = 9e-036
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2 / -3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHK 454
+TR+PSK+S FSGT DK A C KT YP +T+ YHK
Sbjct: 134 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 12
>gb|DR047460.1|DR047460 RTBOR1_1_E07.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_1_E07_A029 3', mRNA sequence
Length = 767
Score = 113 bits (241), Expect(2) = 9e-036
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / -3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 405 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 226
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 225 HFDQLFRESGNFNKNF 178
Score = 56.5 bits (117), Expect(2) = 9e-036
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2 / -3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHK 454
+TR+PSK+S FSGT DK A C KT YP +T+ YHK
Sbjct: 132 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 10
>gb|DR694258.1|DR694258 EST1084349 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA11 3' end, mRNA sequence
Length = 766
Score = 113 bits (241), Expect(2) = 9e-036
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 364 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 543
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 544 HFDQLFRESGNFNKNF 591
Score = 56.5 bits (117), Expect(2) = 9e-036
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHK 454
+TR+PSK+S FSGT DK A C KT YP +T+ YHK
Sbjct: 637 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 759
>gb|CF390163.1|CF390163 RTDR2_12_E06.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E06_A021 5', mRNA
sequence
Length = 671
Score = 113 bits (241), Expect(2) = 9e-036
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 269 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 448
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 449 HFDQLFRESGNFNKNF 496
Score = 56.5 bits (117), Expect(2) = 9e-036
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHK 454
+TR+PSK+S FSGT DK A C KT YP +T+ YHK
Sbjct: 542 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 664
>gb|DR015949.1|DR015949 STRS1_6_E08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_E08_A034 5', mRNA sequence
Length = 826
Score = 105 bits (223), Expect(2) = 6e-035
Identities = 37/70 (52%), Positives = 48/70 (68%)
Frame = +2 / -3
Query: 89 QDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQLF 268
Q KC CDKT +F+D L+ YHKTC HCKG + +YSSM+ LYCK HF+QLF
Sbjct: 821 QQKCKACDKTVYFVDQLSADGVSYHKTCFRCNHCKGTLKLSNYSSMEGVLYCKPHFDQLF 642
Query: 269 KXTGSFSKNF 298
+ +G+F+KNF
Sbjct: 641 RESGNFNKNF 612
Score = 62.0 bits (129), Expect(2) = 6e-035
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +2 / -3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
+TR+PSK+S FSGT DK A C KT YP +T+ YHK +CS
Sbjct: 566 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCS 426
>gb|DR109623.1|DR109623 RTS1_3_C05.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_C05_A029 5', mRNA sequence
Length = 762
Score = 113 bits (241), Expect(2) = 5e-034
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 373 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 552
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 553 HFDQLFRESGNFNKNF 600
Score = 50.6 bits (104), Expect(2) = 5e-034
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXY 448
+TR+PSK+S FSGT DK A C KT YP +T+ Y
Sbjct: 646 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSY 762
>gb|DR168155.1|DR168155 RTPHOS1_23_C06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_C06_A029 5', mRNA sequence
Length = 612
Score = 113 bits (241), Expect(2) = 2e-033
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 231 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 410
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 411 HFDQLFRESGNFNKNF 458
Score = 48.7 bits (100), Expect(2) = 2e-033
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTL 433
+TR+PSK+S FSGT DK A C KT YP +T+
Sbjct: 504 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTV 605
>gb|CO199718.1|CO199718 GEO2_3_C05.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_C05_A032 3', mRNA sequence
Length = 901
Score = 141 bits (302), Expect = 4e-033
Identities = 53/133 (39%), Positives = 73/133 (54%)
Frame = +2 / -3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F G Q KC C+KT + +D LT ++HK C HC G + +YSS + LYCK
Sbjct: 749 MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKP 570
Query: 251 HFEQLFKXTGSFSKNFTPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLT 430
HF+QLFK TGS K+F + P+++S+ FSGT +K AC T YP ++
Sbjct: 569 HFDQLFKRTGSLDKSFVAVKNEKLNDGEIKTPNRVSALFSGTQEKCLACGNTVYPIEKVS 390
Query: 431 LXXXXYHKXXXKC 469
+ YHK KC
Sbjct: 389 VEGVGYHKACFKC 351
>gb|CX653292.1|CX653292 COLD1_64_D11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D11_A029 5', mRNA sequence
Length = 767
Score = 113 bits (241), Expect(2) = 7e-033
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 407 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 586
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 587 HFDQLFRESGNFNKNF 634
Score = 46.9 bits (96), Expect(2) = 7e-033
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYP 415
+TR+PSK+S FSGT DK A C KT YP
Sbjct: 680 MTRSPSKVSMMFSGTQDKCATCGKTAYP 763
>gb|DR023499.1|DR023499 STRS1_58_C09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_C09_A034 3', mRNA sequence
Length = 835
Score = 105 bits (223), Expect(2) = 2e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / -1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 757 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 578
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 577 LYCKPHFDQLFKRTGSLDKSF 515
Score = 53.3 bits (110), Expect(2) = 2e-032
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2 / -1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
+ R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 466 VNRTPSRVSALFSGTQDKCVACGKTVYPIEKVVVDGTSYHRPCFKC 329
>gb|DR118198.1|DR118198 RTMG1_11_F01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_F01_A029 5', mRNA sequence
Length = 654
Score = 105 bits (223), Expect(2) = 2e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 139 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 318
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 319 LYCKPHFDQLFKRTGSLDKSF 381
Score = 53.3 bits (110), Expect(2) = 2e-032
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
+ R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 430 VNRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 567
>gb|DR069276.1|DR069276 RTDK1_6_D02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_D02_A029 3', mRNA sequence
Length = 894
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / -1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 759 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 580
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 579 LYCKPHFDQLFKRTGSLDKSF 517
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / -1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 465 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 334
>gb|DR116628.1|DR116628 RTMG1_1_F07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_1_F07_A029 5', mRNA sequence
Length = 869
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 45 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 224
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 225 LYCKPHFDQLFKRTGSLDKSF 287
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 339 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 470
>gb|DR167536.1|DR167536 RTPHOS1_19_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_A09_A029 5', mRNA sequence
Length = 847
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 84 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 263
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 264 LYCKPHFDQLFKRTGSLDKSF 326
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 378 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 509
>gb|DR385412.1|DR385412 RTHG1_8_B08.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_B08_A029 5', mRNA sequence
Length = 816
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 45 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 224
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 225 LYCKPHFDQLFKRTGSLDKSF 287
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 339 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 470
>gb|CO367617.1|CO367617 RTK1_35_A06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_A06_A029 5', mRNA sequence
Length = 799
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 39 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 218
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 219 LYCKPHFDQLFKRTGSLDKSF 281
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 333 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 464
>gb|CO362139.1|CO362139 RTK1_1_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_B11_A029 5', mRNA sequence
Length = 788
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +2
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 80 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 259
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 260 LYCKPHFDQLFKRTGSLDKSF 322
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 374 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 505
>gb|CV034443.1|CV034443 RTNACL1_9_A04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_A04_A029 3', mRNA sequence
Length = 781
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / -3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 647 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 468
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 467 LYCKPHFDQLFKRTGSLDKSF 405
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / -3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 353 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 222
>gb|CF669591.1|CF669591 RTCNT1_44_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_H07_A029 5', mRNA sequence
Length = 775
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +2
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 44 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 223
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 224 LYCKPHFDQLFKRTGSLDKSF 286
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 338 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 469
>gb|CF664880.1|CF664880 RTCNT1_12_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_B07_A029 5', mRNA sequence
Length = 767
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 99 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 278
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 279 LYCKPHFDQLFKRTGSLDKSF 341
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 393 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 524
>gb|CF391557.1|CF391557 RTDR3_9_D03.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_9_D03_A022 5', mRNA
sequence
Length = 756
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 84 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 263
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 264 LYCKPHFDQLFKRTGSLDKSF 326
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 378 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 509
>gb|CF672019.1|CF672019 RTCNT1_60_F11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_F11_A029 5', mRNA sequence
Length = 744
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 72 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 251
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 252 LYCKPHFDQLFKRTGSLDKSF 314
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 366 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 497
>gb|DR019386.1|DR019386 STRS1_29_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_E03_A034 5', mRNA sequence
Length = 745
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 27 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 206
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 207 LYCKPHFDQLFKRTGSLDKSF 269
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 321 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 452
>gb|DR119006.1|DR119006 RTMG1_20_C03.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_C03_A029 5', mRNA sequence
Length = 746
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 60 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 239
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 240 LYCKPHFDQLFKRTGSLDKSF 302
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 354 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 485
>gb|BX254534.1|BX254534 BX254534 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099G08 similar to POLLEN SPECIFIC PROTEIN
SF3, mRNA sequence
Length = 709
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +2
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 104 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 283
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 284 LYCKPHFDQLFKRTGSLDKSF 346
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 398 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 529
>gb|CF475902.1|CF475902 RTWW2_15_G09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_G09_A021 5', mRNA sequence
Length = 678
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 139 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 318
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 319 LYCKPHFDQLFKRTGSLDKSF 381
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 433 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 564
>gb|BX250310.1|BX250310 BX250310 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035C01 similar to POLLEN SPECIFIC PROTEIN
SF3, mRNA sequence
Length = 666
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 186 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 365
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 366 LYCKPHFDQLFKRTGSLDKSF 428
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 480 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 611
>gb|CF395152.1|CF395152 RTDS2_10_E11.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_E11_A021 3', mRNA sequence
Length = 639
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / -1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 543 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 364
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 363 LYCKPHFDQLFKRTGSLDKSF 301
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / -1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 249 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 118
>gb|DR020571.1|DR020571 STRS1_37_H07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_H07_A034 5', mRNA sequence
Length = 623
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 99 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 278
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 279 LYCKPHFDQLFKRTGSLDKSF 341
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 393 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 524
>gb|DR745694.1|DR745694 RTCU1_31_E05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_E05_A029 5', mRNA sequence
Length = 572
Score = 105 bits (223), Expect(2) = 3e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 112 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 291
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 292 LYCKPHFDQLFKRTGSLDKSF 354
Score = 52.8 bits (109), Expect(2) = 3e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 406 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 537
>gb|CX648436.1|CX648436 COLD1_28_D09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_D09_A029 5', mRNA sequence
Length = 772
Score = 104 bits (222), Expect(2) = 4e-032
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 45 RRPPKMAFAGTTHKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 224
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 225 LYCKPHFDQLFKRTGSLDKSF 287
Score = 52.8 bits (109), Expect(2) = 4e-032
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 339 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 470
>gb|CO163300.1|CO163300 FLD1_40_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_E10_A029 5', mRNA sequence
Length = 834
Score = 103 bits (219), Expect(2) = 1e-031
Identities = 36/79 (45%), Positives = 48/79 (60%)
Frame = +2 / +1
Query: 62 PGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLY 241
P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS + LY
Sbjct: 16 PPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLY 195
Query: 242 CKTHFEQLFKXTGSFSKNF 298
CK HF+QLFK TGS K+F
Sbjct: 196 CKPHFDQLFKRTGSLDKSF 252
Score = 52.8 bits (109), Expect(2) = 1e-031
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 304 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 435
>gb|CF478208.1|CF478208 RTWW3_19_E07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_E07_A022 5', mRNA sequence
Length = 752
Score = 103 bits (219), Expect(2) = 1e-031
Identities = 36/79 (45%), Positives = 48/79 (60%)
Frame = +2 / +1
Query: 62 PGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLY 241
P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS + LY
Sbjct: 31 PPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLY 210
Query: 242 CKTHFEQLFKXTGSFSKNF 298
CK HF+QLFK TGS K+F
Sbjct: 211 CKPHFDQLFKRTGSLDKSF 267
Score = 52.8 bits (109), Expect(2) = 1e-031
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 319 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 450
>gb|DT638133.1|DT638133 EST1153064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHB50 3' end, mRNA sequence
Length = 887
Score = 105 bits (223), Expect(2) = 2e-031
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 124 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTFKLSNYSSFEGV 303
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 304 LYCKPHFDQLFKRTGSLDKSF 366
Score = 50.6 bits (104), Expect(2) = 2e-031
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2 / +1
Query: 344 PSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 424 PSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 549
>gb|DR693161.1|DR693161 EST1083249 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADV56 3' end, mRNA sequence
Length = 760
Score = 105 bits (223), Expect(2) = 2e-031
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +1
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 109 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTFKLSNYSSFEGV 288
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 289 LYCKPHFDQLFKRTGSLDKSF 351
Score = 50.6 bits (104), Expect(2) = 2e-031
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2 / +1
Query: 344 PSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 409 PSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 534
>gb|BQ698981.1|BQ698981 NXRV117_H02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV117_H02 5' similar to Arabidopsis thaliana
sequence At1g10200 putative transcription factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 641
Score = 105 bits (223), Expect(2) = 2e-031
Identities = 37/81 (45%), Positives = 49/81 (60%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 150 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 329
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCK HF+QLFK TGS K+F
Sbjct: 330 LYCKPHFDQLFKRTGSLDKSF 392
Score = 50.6 bits (104), Expect(2) = 2e-031
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC K YP + + YH+ KC
Sbjct: 444 RTPSRVSALFSGTQDKCVACGKXXYPIEKVAVDGTSYHRPCFKC 575
>gb|BX678795.1|BX678795 BX678795 RS Pinus pinaster cDNA clone RS15C02, mRNA sequence
Length = 576
Score = 101 bits (216), Expect(2) = 3e-031
Identities = 38/90 (42%), Positives = 51/90 (56%)
Frame = +2 / +3
Query: 56 RXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXX 235
R P M+F G KC C+KT + +D LT ++HK+C HC G + +YSS +
Sbjct: 129 RRPPKMAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGV 308
Query: 236 LYCKTHFEQLFKXTGSFSKNFTPXXXSSDK 325
LYCK HF+QLFK TGS +F +S K
Sbjct: 309 LYCKPHFDQLFKRTGSLG*SFEAIPRASRK 398
Score = 52.8 bits (109), Expect(2) = 3e-031
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 424 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 555
>gb|BE644138.1|BE644138 NXCI_054_H09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_054_H09 5' similar to Arabidopsis
thaliana sequence At3g55770 transcription factor L2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 113 bits (241), Expect(2) = 4e-031
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+FTG Q KC CDKT +F+D L+ YHK C HCKG + +YSSM+ LYCK
Sbjct: 24 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 203
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLF+ +G+F+KNF
Sbjct: 204 HFDQLFRESGNFNKNF 251
Score = 40.5 bits (82), Expect(2) = 4e-031
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKT 406
+TR+PSK+S FSGT DK A C KT
Sbjct: 297 MTRSPSKVSMMFSGTQDKCATCGKT 371
>gb|CF671501.1|CF671501 RTCNT1_57_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_B07_A029 5', mRNA sequence
Length = 723
Score = 101 bits (215), Expect(2) = 4e-031
Identities = 35/76 (46%), Positives = 47/76 (61%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F G KC C+KT + +D LT ++HK+C HC G + +YSS + LYCK
Sbjct: 9 MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKP 188
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLFK TGS K+F
Sbjct: 189 HFDQLFKRTGSLDKSF 236
Score = 52.8 bits (109), Expect(2) = 4e-031
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 288 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 419
>gb|DR109640.1|DR109640 RTS1_3_E07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E07_A029 5', mRNA sequence
Length = 642
Score = 101 bits (215), Expect(2) = 4e-031
Identities = 35/76 (46%), Positives = 47/76 (61%)
Frame = +2 / +2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F G KC C+KT + +D LT ++HK+C HC G + +YSS + LYCK
Sbjct: 8 MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKP 187
Query: 251 HFEQLFKXTGSFSKNF 298
HF+QLFK TGS K+F
Sbjct: 188 HFDQLFKRTGSLDKSF 235
Score = 52.8 bits (109), Expect(2) = 4e-031
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKC 469
R PS++S+ FSGT DK AC KT YP + + YH+ KC
Sbjct: 287 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKC 418
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 164,025,499
Number of Sequences: 355925
Number of extensions: 1401504
Number of successful extensions: 17656
Number of sequences better than 1.0e-020: 99
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6132913410
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)