TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR177171.1|DR177171 RTMNUT1_3_C06.g1_A029 Roots minus mi... 96 8e-024
gb|DR177096.1|DR177096 RTMNUT1_3_C06.b1_A029 Roots minus mi... 95 1e-023
gb|DR014350.1|DR014350 HEAT1_49_A07.b1_A029 Root at 37 C fo... 102 2e-021
gb|CV034926.1|CV034926 RTNACL1_12_B09.g1_A029 Roots plus ad... 101 2e-021
gb|DR023194.1|DR023194 STRS1_56_C06.b1_A034 Shoot tip pitch... 101 2e-021
gb|DR092942.1|DR092942 STRR1_5_C02.b1_A033 Stem Response Re... 100 9e-021
gb|DR096032.1|DR096032 STRR1_25_G03.b1_A033 Stem Response R... 100 9e-021
gb|DR096113.1|DR096113 STRR1_25_G03.g1_A033 Stem Response R... 100 9e-021
gb|DR098625.1|DR098625 STRR1_46_G04.g1_A033 Stem Response R... 100 9e-021
gb|DR102090.1|DR102090 STRR1_78_H02.b1_A033 Stem Response R... 100 9e-021
>gb|DR177171.1|DR177171 RTMNUT1_3_C06.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_C06_A029 5', mRNA sequence
Length = 745
Score = 95.9 bits (203), Expect(2) = 8e-024
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +2 / +1
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEM 352
++LR L+D S VESF GGK CI +R YP++A+G+DAHLYVFNNG VT + L AWEM
Sbjct: 514 LSLRVLVDHSIVESFAEGGKACITARAYPTLAIGRDAHLYVFNNGTSSVTATKLIAWEM 690
Score = 33.6 bits (67), Expect(2) = 8e-024
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2 / +1
Query: 74 KVLMCTDPTKXXLSPDLYKPTFXXFVD 154
KVLMC+D ++ L DL K T+ FV+
Sbjct: 406 KVLMCSDQSRSSLKNDLDKTTYGAFVN 486
>gb|DR177096.1|DR177096 RTMNUT1_3_C06.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_C06_A029 3', mRNA sequence
Length = 753
Score = 95.5 bits (202), Expect(2) = 1e-023
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +2 / +3
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEM 352
++LR L+D S VESF GGK CI +R YP++A+G+DAHLYVFNNG VT + L AWEM
Sbjct: 231 LSLRVLVDHSIVESFAEGGKACITARAYPTLAIGEDAHLYVFNNGTSSVTATKLIAWEM 407
Score = 33.6 bits (67), Expect(2) = 1e-023
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 74 KVLMCTDPTKXXLSPDLYKPTFXXFVD 154
KVLMC+D ++ L DL K T+ FV+
Sbjct: 123 KVLMCSDQSRSSLKNDLDKTTYGAFVN 203
>gb|DR014350.1|DR014350 HEAT1_49_A07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_A07_A029 3', mRNA sequence
Length = 879
Score = 102 bits (217), Expect = 2e-021
Identities = 39/59 (66%), Positives = 47/59 (79%)
Frame = +2 / +2
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEM 352
++LR L+D S VESFG GGK CI +R YP++A+GKDAHLYVFNNG VT + LTAWEM
Sbjct: 242 LSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYVFNNGTSTVTANKLTAWEM 418
>gb|CV034926.1|CV034926 RTNACL1_12_B09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_12_B09_A029 5', mRNA sequence
Length = 611
Score = 101 bits (216), Expect = 2e-021
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = +2 / +3
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEM 352
++LR L+D S VESFG GGK CI +R YP++A+GKDAHLY FNNG VT S LTAWEM
Sbjct: 429 LSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTASKLTAWEM 605
>gb|DR023194.1|DR023194 STRS1_56_C06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_C06_A034 3', mRNA sequence
Length = 763
Score = 101 bits (216), Expect = 2e-021
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = +2 / +3
Query: 176 ITLRSLIDRSXVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEM 352
++LR L+D S VESFG GGK CI +R YP++A+GKDAHLY FNNG VT S LTAWEM
Sbjct: 108 LSLRVLVDHSIVESFGEGGKACITARAYPTLAIGKDAHLYAFNNGTSTVTASKLTAWEM 284
>gb|DR092942.1|DR092942 STRR1_5_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_5_C02_A033 3', mRNA sequence
Length = 890
Score = 100 bits (212), Expect = 9e-021
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +2 / +2
Query: 56 DGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGK 235
+G+ KV +C D ++ L D+ K ++ FV ++LR L+D S VESF GG+
Sbjct: 329 NGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGR 508
Query: 236 TCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
TCI SR YP++AV ++AHL+VFN + + L+AW MK
Sbjct: 509 TCITSRSYPTLAVNENAHLFVFNYNKSPLLLRRLSAWHMK 628
>gb|DR096032.1|DR096032 STRR1_25_G03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_G03_A033 3', mRNA sequence
Length = 691
Score = 100 bits (212), Expect = 9e-021
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +2 / -1
Query: 56 DGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGK 235
+G+ KV +C D ++ L D+ K ++ FV ++LR L+D S VESF GG+
Sbjct: 562 NGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGR 383
Query: 236 TCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
TCI SR YP++AV ++AHL+VFN + + L+AW MK
Sbjct: 382 TCITSRSYPTLAVNENAHLFVFNYNKSPLLLRRLSAWHMK 263
>gb|DR096113.1|DR096113 STRR1_25_G03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_G03_A033 5', mRNA sequence
Length = 643
Score = 100 bits (212), Expect = 9e-021
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +2 / -3
Query: 56 DGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGK 235
+G+ KV +C D ++ L D+ K ++ FV ++LR L+D S VESF GG+
Sbjct: 518 NGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGR 339
Query: 236 TCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
TCI SR YP++AV ++AHL+VFN + + L+AW MK
Sbjct: 338 TCITSRSYPTLAVNENAHLFVFNYNKSPLLLRRLSAWHMK 219
>gb|DR098625.1|DR098625 STRR1_46_G04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_46_G04_A033 5', mRNA sequence
Length = 733
Score = 100 bits (212), Expect = 9e-021
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +2 / -3
Query: 56 DGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGK 235
+G+ KV +C D ++ L D+ K ++ FV ++LR L+D S VESF GG+
Sbjct: 527 NGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGR 348
Query: 236 TCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
TCI SR YP++AV ++AHL+VFN + + L+AW MK
Sbjct: 347 TCITSRSYPTLAVNENAHLFVFNYNKSPLLLRRLSAWHMK 228
>gb|DR102090.1|DR102090 STRR1_78_H02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_78_H02_A033 3', mRNA sequence
Length = 869
Score = 100 bits (212), Expect = 9e-021
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +2 / +3
Query: 56 DGHGKPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGK 235
+G+ KV +C D ++ L D+ K ++ FV ++LR L+D S VESF GG+
Sbjct: 303 NGNVHRKVALCVDQSRSTLQVDVDKTSYGGFVSVKPHQRSLSLRVLVDHSIVESFAEGGR 482
Query: 236 TCILSRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMK 355
TCI SR YP++AV ++AHL+VFN + + L+AW MK
Sbjct: 483 TCITSRSYPTLAVNENAHLFVFNYNKSPLLLRRLSAWHMK 602
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 152,023,156
Number of Sequences: 355925
Number of extensions: 1409871
Number of successful extensions: 22791
Number of sequences better than 1.0e-020: 12
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 5626837985
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)