TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR057199.1|DR057199 RTNIT1_4_F01.b1_A029 Roots minus nit... 218 5e-085
gb|DN613126.1|DN613126 EST966176 Subtracted pine embryo lib... 184 2e-080
gb|DT628857.1|DT628857 EST1155427 Subtracted pine embryo li... 178 1e-078
gb|CF395073.1|CF395073 RTDS2_9_D11.g1_A021 Drought-stressed... 289 4e-077
gb|DR388955.1|DR388955 RTHG1_31_B08.g1_A029 Roots plus adde... 191 6e-077
gb|DR080289.1|DR080289 RTFEPL1_21_E03.g1_A029 Roots plus ad... 139 5e-067
gb|CO163177.1|CO163177 FLD1_40_A10.b1_A029 Root flooded Pin... 239 5e-062
gb|CO162800.1|CO162800 FLD1_37_C09.g1_A029 Root flooded Pin... 138 9e-056
gb|CO162719.1|CO162719 FLD1_37_C09.b1_A029 Root flooded Pin... 138 1e-051
gb|CO164783.1|CO164783 FLD1_50_F12.b1_A029 Root flooded Pin... 134 5e-051
gb|BX254119.1|BX254119 BX254119 Pinus pinaster differenciat... 168 1e-048
gb|CO164864.1|CO164864 FLD1_50_F12.g1_A029 Root flooded Pin... 134 3e-038
gb|CO199083.1|CO199083 GEO1_18_E05.g1_A029 Root gravitropis... 114 3e-034
gb|CO199016.1|CO199016 GEO1_18_E05.b1_A029 Root gravitropis... 104 9e-030
gb|BG039640.1|BG039640 NXSI_102_D08_F NXSI (Nsf Xylem Side ... 96 5e-027
gb|BI397535.1|BI397535 NXPV_100_D10_F NXPV (Nsf Xylem Plani... 111 1e-026
gb|DR388879.1|DR388879 RTHG1_31_B08.b1_A029 Roots plus adde... 98 8e-024
gb|DR080217.1|DR080217 RTFEPL1_21_E03.b1_A029 Roots plus ad... 101 1e-023
gb|CF478669.1|CF478669 RTWW3_16_D07.g1_A022 Well-watered lo... 84 1e-023
gb|BG317656.1|BG317656 NXPV_004_C06_F NXPV (Nsf Xylem Plani... 111 2e-023
gb|BG832714.1|BG832714 NXPV_078_G09_F NXPV (Nsf Xylem Plani... 111 2e-023
gb|DR057271.1|DR057271 RTNIT1_4_F01.g1_A029 Roots minus nit... 100 3e-023
gb|BE209111.1|BE209111 NXNV_139_H12_F Nsf Xylem Normal wood... 95 5e-022
>gb|DR057199.1|DR057199 RTNIT1_4_F01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_F01_A029 3', mRNA sequence
Length = 735
Score = 218 bits (470), Expect(2) = 5e-085
Identities = 81/126 (64%), Positives = 106/126 (84%)
Frame = +3 / -1
Query: 402 ETEFIVGPIPVDDGNGKEVATEIVTNMVTNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQP 581
E +F+VGPIPVDD GKE+ +TN+ +N F+TDS+GRDF+KRIR+YR +W +++H+
Sbjct: 717 EIDFLVGPIPVDDNLGKEIVVRFMTNLSSNGEFFTDSNGRDFLKRIRNYRKDWDLDIHED 538
Query: 582 IAGNYYPVNLGIYVEDGSKELSVLVDRSIGGSSIKDGQIELMLHRRLLHDDGKGVAEALN 761
IAGNYYP+NLGIY++D E S+LVDR +GGSSI DG++ELMLHRRLLHDDG+GV EALN
Sbjct: 537 IAGNYYPLNLGIYLKDNKTEFSLLVDRPLGGSSIFDGELELMLHRRLLHDDGRGVGEALN 358
Query: 762 ETVCLD 779
ETVC++
Sbjct: 357 ETVCIN 340
Score = 118 bits (252), Expect(2) = 5e-085
Identities = 50/109 (45%), Positives = 66/109 (60%)
Frame = +3 / -1
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 327 CEGLTVQGKLYLSVKPAEEAPEWRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVA 148
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVF 1112
Y LP N+A++TLQELED LLR AHLYE GE SS+A +DL+ +F
Sbjct: 147 GYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARVDLQSLF 1
>gb|DN613126.1|DN613126 EST966176 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABO40, mRNA sequence
Length = 742
Score = 184 bits (396), Expect(2) = 2e-080
Identities = 68/103 (66%), Positives = 90/103 (87%)
Frame = +3 / +2
Query: 471 VTNMVTNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSKELSV 650
+TN+ +N F+TDS+GRDF+KRIR+YR +W +++H+ IAGNYYP+NLGIY++D E S+
Sbjct: 8 MTNLSSNGEFFTDSNGRDFLKRIRNYRKDWDLDIHEDIAGNYYPLNLGIYLKDNKTEFSL 187
Query: 651 LVDRSIGGSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLD 779
LVDR +GGSSI DG++ELMLHRRLLHDDG+GV EALNETVC++
Sbjct: 188 LVDRPLGGSSIFDGELELMLHRRLLHDDGRGVGEALNETVCIN 316
Score = 136 bits (292), Expect(2) = 2e-080
Identities = 58/132 (43%), Positives = 81/132 (61%)
Frame = +3 / +2
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 329 CEGLTVQGKLYLSVKPAEEAPEWRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVA 508
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIET 1145
Y LP N+A++TLQELED LLR AHLYE GE SS+A DL+ +F +KI +++E
Sbjct: 509 GYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARFDLQNLFSRRKIKEIVEL 688
Query: 1146 SLSANQERAAME 1181
+LSA Q ++ M+
Sbjct: 689 NLSAVQNKSEMK 724
>gb|DT628857.1|DT628857 EST1155427 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD277 5' end, mRNA sequence
Length = 781
Score = 178 bits (384), Expect(2) = 1e-078
Identities = 66/98 (67%), Positives = 86/98 (87%)
Frame = +3 / -1
Query: 486 TNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSKELSVLVDRS 665
+N F+TDS+GRDF+KRIR+YR +W +++H+ IAGNYYP+NLGIY++D E S+LVDR
Sbjct: 781 SNGEFFTDSNGRDFLKRIRNYRKDWDLDIHEDIAGNYYPLNLGIYLKDNKTEFSLLVDRP 602
Query: 666 IGGSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLD 779
+GGSSI DG++ELMLHRRLLHDDG+GV EALNETVC++
Sbjct: 601 LGGSSIFDGELELMLHRRLLHDDGRGVGEALNETVCIN 488
Score = 136 bits (292), Expect(2) = 1e-078
Identities = 58/132 (43%), Positives = 81/132 (61%)
Frame = +3 / -1
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 475 CEGLTVQGKLYLSVKPAEEAPEWRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVA 296
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIET 1145
Y LP N+A++TLQELED LLR AHLYE GE SS+A DL+ +F +KI +++E
Sbjct: 295 GYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARFDLQNLFSRRKIKEIVEL 116
Query: 1146 SLSANQERAAME 1181
+LSA Q ++ M+
Sbjct: 115 NLSAVQNKSEMK 80
>gb|CF395073.1|CF395073 RTDS2_9_D11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_9_D11_A021 5', mRNA sequence
Length = 729
Score = 289 bits (625), Expect = 4e-077
Identities = 115/182 (63%), Positives = 148/182 (81%)
Frame = +3 / +3
Query: 651 LVDRSIGGSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLDKQCEGLIIQGKYYVKID 830
LVDR++GG+SI+DG++E+MLHRRLLHDD +GV E LNETVC+ +C+GL ++G YYV I
Sbjct: 3 LVDRAVGGASIEDGELEIMLHRRLLHDDSRGVGEPLNETVCVQSKCQGLTVKGTYYVSIH 182
Query: 831 PQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQE 1010
P G GA+WRRT GQE+YSPLLLAF+EQDG +W SH++ FSAMD YSLP NVA++TLQE
Sbjct: 183 PVGSGAQWRRTTGQEVYSPLLLAFSEQDGDHWNASHISSFSAMDPNYSLPKNVAIITLQE 362
Query: 1011 LEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIETSLSANQERAAMEKKR 1190
LEDGSVL R AHLYEAGED+ S++A ++LK+VF + I K E SLSANQE++ M++ +
Sbjct: 363 LEDGSVLFRLAHLYEAGEDQVYSTVAKVELKKVFGTRMILKAKEMSLSANQEKSEMKRLK 542
Query: 1191 LK 1196
K
Sbjct: 543 WK 548
Score = 105 bits (225), Expect(2) = 9e-028
Identities = 63/131 (48%), Positives = 69/131 (52%)
Frame = -3 / -3
Query: 1156 ADKLVSMTLPIFFSGNTLLRSILAKDERSLSSPASYR*ANXXXXXXXXXXXXXSIATLSG 977
ADKL+S+ I T L S LA E + SSPAS R*AN IAT G
Sbjct: 508 ADKLISLAFNIILVPKTFLSSTLATVEYTWSSPAS*R*ANRKRTLPSSSS*RVIIATFFG 329
Query: 976 KL*VESIAENFATCEFAQLPPSCSVKARRRGEYISWPNVRRHRAPSPCGSILT*YFPCIM 797
K *+ SIAE E Q PSCS KA R GEY S P VRRH AP P G +LT* P +
Sbjct: 328 KE*LGSIAEKLEI*EAFQWSPSCSEKANRSGEYTSCPVVRRHCAPLPTGWMLT**VPFTV 149
Query: 796 SPSHCLSRQTV 764
SP H QTV
Sbjct: 148 SP*HFDCTQTV 116
Score = 91.3 bits (193), Expect(2) = 6e-027
Identities = 52/135 (38%), Positives = 70/135 (51%)
Frame = +2 / +2
Query: 668 WRFQYKGWTNRANATQEATP**WERRRRGAK*NSLSR*AM*RTHYTRKILCQNRPTRRRS 847
WR ++ W NA+Q P**+ R + *N L + RT+ R +LC + +R
Sbjct: 20 WRCKH*RWGT*NNASQAIAP**FSRGW*TS**NCLCTIEVSRTNSERYLLC*HPSCGKRC 199
Query: 848 SVASDIWPGNILPSPSCFHRAGWRQLGEFTCCKILCDGFNLQLA**CCNAYPSGA*RWKC 1027
+VAS W +I +P AGWR L F+ K L +G L CCN +PSGA RWKC
Sbjct: 200 TVASYYWTRSIFSAPISLLGAGWRPLECFSYFKFLSNGSQLFFTKECCNNHPSGARRWKC 379
Query: 1028 SPSVCSSI*GRGGQG 1072
S+ S +*GR G
Sbjct: 380 PFSIGSPL*GRRRPG 424
Score = 51.0 bits (105), Expect(2) = 6e-027
Identities = 24/55 (43%), Positives = 31/55 (56%)
Frame = +3 / +3
Query: 1149 LSANQERAAMEKKRLKWKAQGSAADEKVVRGGPVDPSKLVVELGPMEIRTFIVSF 1313
+S + + E KRLKWK G V G +VVELGPMEIRTF+++F
Sbjct: 495 MSLSANQEKSEMKRLKWKVAGDNGMHDVGIRGRRLDHNMVVELGPMEIRTFVLNF 659
Score = 39.1 bits (79), Expect(2) = 9e-028
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -3 / -3
Query: 1312 KLTMNVRISIGPSSTTSFEGSTGPPRTTFSSAAEPCAFHFKRFFS 1178
K VRISIGP+STT P T P FHF F S
Sbjct: 658 KFKTKVRISIGPNSTTMLWSRRRPLMPTSCIPLSPATFHFNLFIS 524
>gb|DR388955.1|DR388955 RTHG1_31_B08.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_B08_A029 5', mRNA sequence
Length = 736
Score = 191 bits (412), Expect(3) = 6e-077
Identities = 72/114 (63%), Positives = 94/114 (82%)
Frame = +3 / +2
Query: 438 DGNGKEVATEIVTNMVTNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGI 617
D GKEV T ++ +NK F+TDS+GRDF+KR+R+YR +W + +H+ IAGNYYP+NLGI
Sbjct: 2 DELGKEVVTRFRIDIPSNKEFFTDSNGRDFLKRVRNYRKDWNLRIHEVIAGNYYPLNLGI 181
Query: 618 YVEDGSKELSVLVDRSIGGSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLD 779
Y++D +LS+LVDRS+GGSSI DG++E+MLHRRLLHDD KGVAE LNET+C D
Sbjct: 182 YLKDNKTDLSLLVDRSVGGSSIFDGELEIMLHRRLLHDDNKGVAENLNETICFD 343
Score = 86.3 bits (182), Expect(3) = 6e-077
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +3 / +2
Query: 945 KFSAMDSTYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKK 1124
++SAM Y LP NVA+LTLQELED LLR AHLYE GE S ++D+ ++F ++K
Sbjct: 515 QYSAMAEDYELPSNVAILTLQELEDQQTLLRLAHLYEVGESAIFSKTVTVDIYKLFADRK 694
Query: 1125 IGKVIETSL 1151
+ K++E +L
Sbjct: 695 VKKIVELNL 721
Score = 50.6 bits (104), Expect(3) = 6e-077
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +3 / +2
Query: 777 DKQCEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAF 902
++ CEGL +QG+ Y+ ++ G+ + WRRT GQ+ PL +F
Sbjct: 347 NRTCEGLAVQGRIYLSVNSVGKASEWRRTKGQKALLPLQFSF 472
>gb|DR080289.1|DR080289 RTFEPL1_21_E03.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_E03_A029 5', mRNA sequence
Length = 735
Score = 139 bits (299), Expect(2) = 5e-067
Identities = 51/77 (66%), Positives = 66/77 (85%)
Frame = +3 / +2
Query: 549 RSEWKIEVHQPIAGNYYPVNLGIYVEDGSKELSVLVDRSIGGSSIKDGQIELMLHRRLLH 728
R +W +++H+ IAGNYYP+NLGIY++D E S+LVDR +GGSSI DG++ELMLHRRL H
Sbjct: 2 RKDWDLDIHEEIAGNYYPLNLGIYLKDNKTEFSLLVDRPLGGSSIFDGELELMLHRRLFH 181
Query: 729 DDGKGVAEALNETVCLD 779
DDG+GV EALNETVC++
Sbjct: 182 DDGRGVGEALNETVCIN 232
Score = 136 bits (292), Expect(2) = 5e-067
Identities = 58/132 (43%), Positives = 82/132 (62%)
Frame = +3 / +2
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 245 CEGLTVQGKLYLSVKPAEEAPEWRRTKGLKAALPLQILFATIDEDEVNQINTPQYSAMVA 424
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIET 1145
Y LP N+A++TLQELED LLR AHLYE GE SS+A +DL+ +F +KI +++E
Sbjct: 425 GYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARVDLQSLFSRRKIKEIVEL 604
Query: 1146 SLSANQERAAME 1181
+LSA Q ++ M+
Sbjct: 605 NLSAVQNKSEMK 640
>gb|CO163177.1|CO163177 FLD1_40_A10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_A10_A029 3', mRNA sequence
Length = 834
Score = 239 bits (516), Expect = 5e-062
Identities = 97/157 (61%), Positives = 122/157 (77%)
Frame = +3 / +2
Query: 726 HDDGKGVAEALNETVCLDKQCEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFT 905
HDD GV E LNETVC+ +C+GL ++G YYV I P G GA+WRRT GQE+YSPLLLAF+
Sbjct: 2 HDDS*GVGEPLNETVCVQSKCQGLTVKGTYYVSIHPVGSGAQWRRTTGQEVYSPLLLAFS 181
Query: 906 EQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSL 1085
EQDG +W SH++ FSAMD YSLP NVA++TLQELEDGSVL R AHLYEAGED+ S++
Sbjct: 182 EQDGDHWNASHISSFSAMDPNYSLPKNVAIITLQELEDGSVLFRLAHLYEAGEDQVYSTV 361
Query: 1086 ASIDLKRVFPEKKIGKVIETSLSANQERAAMEKKRLK 1196
A ++LK+VF + I K E SLSANQE++ M++ + K
Sbjct: 362 AKVELKKVFGTRMILKAKEMSLSANQEKSEMKRLKWK 472
Score = 105 bits (225), Expect(2) = 9e-028
Identities = 63/131 (48%), Positives = 69/131 (52%)
Frame = -3 / -1
Query: 1156 ADKLVSMTLPIFFSGNTLLRSILAKDERSLSSPASYR*ANXXXXXXXXXXXXXSIATLSG 977
ADKL+S+ I T L S LA E + SSPAS R*AN IAT G
Sbjct: 432 ADKLISLAFNIILVPKTFLSSTLATVEYTWSSPAS*R*ANRKRTLPSSSS*RVIIATFFG 253
Query: 976 KL*VESIAENFATCEFAQLPPSCSVKARRRGEYISWPNVRRHRAPSPCGSILT*YFPCIM 797
K *+ SIAE E Q PSCS KA R GEY S P VRRH AP P G +LT* P +
Sbjct: 252 KE*LGSIAEKLEI*EAFQWSPSCSEKANRSGEYTSCPVVRRHCAPLPTGWMLT**VPFTV 73
Query: 796 SPSHCLSRQTV 764
SP H QTV
Sbjct: 72 SP*HFDCTQTV 40
Score = 78.0 bits (164), Expect(2) = 5e-023
Identities = 39/94 (41%), Positives = 51/94 (54%)
Frame = +2 / +1
Query: 791 RTHYTRKILCQNRPTRRRSSVASDIWPGNILPSPSCFHRAGWRQLGEFTCCKILCDGFNL 970
RT+ R +LC + +R +VAS W +I +P AGWR L F+ K L +G L
Sbjct: 67 RTNSERYLLC*HPSCGKRCTVASYYWTRSIFSAPISLLGAGWRPLECFSYFKFLSNGSQL 246
Query: 971 QLA**CCNAYPSGA*RWKCSPSVCSSI*GRGGQG 1072
CCN +PSGA RWKC S+ S +*GR G
Sbjct: 247 FFTKECCNNHPSGARRWKCPFSIGSPL*GRRRPG 348
Score = 51.0 bits (105), Expect(2) = 5e-023
Identities = 24/55 (43%), Positives = 31/55 (56%)
Frame = +3 / +2
Query: 1149 LSANQERAAMEKKRLKWKAQGSAADEKVVRGGPVDPSKLVVELGPMEIRTFIVSF 1313
+S + + E KRLKWK G V G +VVELGPMEIRTF+++F
Sbjct: 419 MSLSANQEKSEMKRLKWKVAGDNGMHDVGIRGRRLDHNMVVELGPMEIRTFVLNF 583
Score = 39.1 bits (79), Expect(2) = 9e-028
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -3 / -1
Query: 1312 KLTMNVRISIGPSSTTSFEGSTGPPRTTFSSAAEPCAFHFKRFFS 1178
K VRISIGP+STT P T P FHF F S
Sbjct: 582 KFKTKVRISIGPNSTTMLWSRRRPLMPTSCIPLSPATFHFNLFIS 448
>gb|CO162800.1|CO162800 FLD1_37_C09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_C09_A029 5', mRNA sequence
Length = 884
Score = 138 bits (295), Expect(3) = 9e-056
Identities = 58/132 (43%), Positives = 82/132 (62%)
Frame = +3 / +2
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 152 CEGLTVQGKLYLSVKPAEEAPEWRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVA 331
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIET 1145
Y LP N+A++TLQELED LLR AHLYE GE SS+A +DL+ +F +KI +++E
Sbjct: 332 GYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARVDLQNLFSRRKIKEIVEL 511
Query: 1146 SLSANQERAAME 1181
+LSA Q ++ M+
Sbjct: 512 NLSAVQNKSEMK 547
Score = 89.5 bits (189), Expect(3) = 9e-056
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +3 / +2
Query: 645 SVLVDRSIGGSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLD 779
S+LVDR +GGSSI DG++ELMLHRRLLHDDG+GV EALNETVC++
Sbjct: 5 SLLVDRPLGGSSIFDGELELMLHRRLLHDDGRGVGEALNETVCIN 139
Score = 29.9 bits (59), Expect(3) = 9e-056
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3 / +2
Query: 1248 VDPSKLVVELGPMEIRTFIVSF 1313
+ + ++EL PMEIRTF + F
Sbjct: 611 IKDEEYIIELAPMEIRTFQIEF 676
>gb|CO162719.1|CO162719 FLD1_37_C09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_C09_A029 3', mRNA sequence
Length = 885
Score = 138 bits (295), Expect(3) = 1e-051
Identities = 58/132 (43%), Positives = 82/132 (62%)
Frame = +3 / +3
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 123 CEGLTVQGKLYLSVKPAEEAPEWRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVA 302
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIET 1145
Y LP N+A++TLQELED LLR AHLYE GE SS+A +DL+ +F +KI +++E
Sbjct: 303 GYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARVDLQNLFSRRKIKEIVEL 482
Query: 1146 SLSANQERAAME 1181
+LSA Q ++ M+
Sbjct: 483 NLSAVQNKSEMK 518
Score = 75.3 bits (158), Expect(3) = 1e-051
Identities = 29/36 (80%), Positives = 34/36 (94%)
Frame = +3 / +3
Query: 672 GSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLD 779
GSSI DG++ELMLHRRLLHDDG+GV EALNETVC++
Sbjct: 3 GSSIFDGELELMLHRRLLHDDGRGVGEALNETVCIN 110
Score = 29.9 bits (59), Expect(3) = 1e-051
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3 / +3
Query: 1248 VDPSKLVVELGPMEIRTFIVSF 1313
+ + ++EL PMEIRTF + F
Sbjct: 582 IKDEEYIIELAPMEIRTFQIEF 647
>gb|CO164783.1|CO164783 FLD1_50_F12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F12_A029 3', mRNA sequence
Length = 801
Score = 134 bits (287), Expect(3) = 5e-051
Identities = 57/132 (43%), Positives = 81/132 (61%)
Frame = +3 / +1
Query: 786 CEGLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDS 965
CEGL +QGK Y+ + P E WRRT G + PL + F D + ++SAM +
Sbjct: 124 CEGLTVQGKLYLSVKPVEEAPEWRRTKGLKAALPLQILFATIDEDEVNQINTPQYSAMVA 303
Query: 966 TYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIET 1145
Y LP N+A++TLQELED LLR AHLYE GE SS+A +DL+ +F +KI +++E
Sbjct: 304 GYELPPNIAIITLQELEDHHTLLRLAHLYEVGESDKFSSIARVDLQSLFSRRKIKEIVEL 483
Query: 1146 SLSANQERAAME 1181
+ SA Q ++ M+
Sbjct: 484 NFSAVQNKSEMK 519
Score = 78.0 bits (164), Expect(3) = 5e-051
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +3 / +1
Query: 669 GGSSIKDGQIELMLHRRLLHDDGKGVAEALNETVCLD 779
GGSSI DG++ELMLHRRLLHDDG+GV EALNETVC++
Sbjct: 1 GGSSIFDGELELMLHRRLLHDDGRGVGEALNETVCIN 111
Score = 29.0 bits (57), Expect(3) = 5e-051
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 1248 VDPSKLVVELGPMEIRTFIVSF 1313
+ + ++EL PMEIRTF + F
Sbjct: 583 IKDEEYIIELAPMEIRTFQLEF 648
>gb|BX254119.1|BX254119 BX254119 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093F09, mRNA sequence
Length = 679
Score = 168 bits (362), Expect(3) = 1e-048
Identities = 62/109 (56%), Positives = 86/109 (78%)
Frame = +3 / +3
Query: 378 VYKEKDFLETEFIVGPIPVDDGNGKEVATEIVTNMVTNKTFYTDSSGRDFIKRIRDYRSE 557
+YK + E +F+VGPIPVDD GKE+ +TN+ +N F+TDS+GRDF+KRIR+YR +
Sbjct: 351 LYKNAEDAEIDFLVGPIPVDDNLGKEIVVRFMTNLSSNGEFFTDSNGRDFLKRIRNYRKD 530
Query: 558 WKIEVHQPIAGNYYPVNLGIYVEDGSKELSVLVDRSIGGSSIKDGQIEL 704
W +++H+ IAGNYYP+NLGIY++D E S+LVDR +GGSSI DG++EL
Sbjct: 531 WDLDIHEEIAGNYYPLNLGIYLKDNKTEFSLLVDRPLGGSSIFDGELEL 677
Score = 35.4 bits (71), Expect(3) = 1e-048
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2 / +3
Query: 293 QVSLTVLRGPILDEVHQQINSWIYQITR 376
Q +V++G I+ EVHQQ + W+ Q+ R
Sbjct: 267 QAIQSVIQGDIVSEVHQQFSPWVSQVVR 350
Score = 29.5 bits (58), Expect(3) = 1e-048
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2 / +3
Query: 233 QASGAYIFRPNGT 271
QASGAY+FRPN +
Sbjct: 198 QASGAYVFRPNSS 236
>gb|CO164864.1|CO164864 FLD1_50_F12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F12_A029 5', mRNA sequence
Length = 826
Score = 134 bits (287), Expect(3) = 3e-038
Identities = 47/84 (55%), Positives = 67/84 (79%)
Frame = +3 / +3
Query: 378 VYKEKDFLETEFIVGPIPVDDGNGKEVATEIVTNMVTNKTFYTDSSGRDFIKRIRDYRSE 557
+YK + E +F+VGPIPVDD GKE+ +TN+ +N F+TDS+GRDF+KRIR+YR +
Sbjct: 573 LYKNAEDAEIDFLVGPIPVDDNLGKEIVVRFMTNLSSNGEFFTDSNGRDFLKRIRNYRKD 752
Query: 558 WKIEVHQPIAGNYYPVNLGIYVED 629
W +++H+ IAGNYYP+NLGIY++D
Sbjct: 753 WDLDIHEEIAGNYYPLNLGIYLKD 824
Score = 34.5 bits (69), Expect(3) = 3e-038
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2 / +3
Query: 293 QVSLTVLRGPILDEVHQQINSWIYQITR 376
Q +++ G I+ EVHQQ + W+ Q+ R
Sbjct: 489 QAIQSIIHGDIVSEVHQQFSPWVSQVVR 572
Score = 29.5 bits (58), Expect(3) = 3e-038
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2 / +3
Query: 233 QASGAYIFRPNGT 271
QASGAY+FRPN +
Sbjct: 420 QASGAYVFRPNSS 458
>gb|CO199083.1|CO199083 GEO1_18_E05.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_18_E05_A029 5', mRNA sequence
Length = 762
Score = 114 bits (244), Expect(2) = 3e-034
Identities = 46/96 (47%), Positives = 66/96 (68%)
Frame = +3 / +1
Query: 477 NMVTNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSKELSVLV 656
++ N FYTDS+GR ++R R+++ + +P+A NY+PVN I + D + L +L
Sbjct: 421 SIANNGVFYTDSNGRQLVQRKRNWQKYYTFTNQEPVAANYFPVNSRIMINDLNNGLVILT 600
Query: 657 DRSIGGSSIKDGQIELMLHRRLLHDDGKGVAEALNE 764
DRS GG+SI DGQ+ELMLHRR +DDG GV +AL+E
Sbjct: 601 DRSEGGASINDGQVELMLHRRDFYDDGYGVDQALDE 708
Score = 51.9 bits (107), Expect(2) = 3e-034
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2 / +1
Query: 215 GNGSDPQASGAYIFRPNGTVPISTDGQVSLTVLRGPILDEVHQQINSWIYQITR 376
G+ + QASGAY+FRP P+S SLT + ++ EV Q W+ Q R
Sbjct: 151 GSNGNGQASGAYVFRPETQSPVSVATSASLTYINSTLVQEVRQIFTPWLSQTIR 312
>gb|CO199016.1|CO199016 GEO1_18_E05.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_18_E05_A029 3', mRNA sequence
Length = 787
Score = 104 bits (221), Expect(3) = 9e-030
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = +3 / +1
Query: 504 TDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSKELSVLVDRSIGGSSI 683
TDS+GR ++R R+ + + +P+A NY+PVN I + D + L +L DRS GG+SI
Sbjct: 1 TDSNGRQLVQRKRNCQKYYTFTNQEPVAANYFPVNSRIMINDLNNGLVILTDRSEGGASI 180
Query: 684 KDGQIELMLHRRLLHDDGKGVAEALNE 764
DGQ+ELMLHRR +DDG GV +AL+E
Sbjct: 181 NDGQVELMLHRRDFYDDGYGVDQALDE 261
Score = 38.2 bits (77), Expect(3) = 9e-030
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 972 SLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSL 1085
+LP + +LTL+ + D SVL+R H Y+ ED ++S+
Sbjct: 457 ALPPQLNLLTLKLISDTSVLIRLEHFYQKTEDATVASV 570
Score = 27.2 bits (53), Expect(3) = 9e-030
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3 / +1
Query: 792 GLIIQGKYYVKIDPQGEGARWRRTFGQEIYSPLLLAFT 905
GL+++GK+++ + P E R ++ +L F+
Sbjct: 280 GLVVRGKHWLLLAPTTEAQTLHRALANSLFHQPVLTFS 393
>gb|BG039640.1|BG039640 NXSI_102_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_D08 5' similar to Arabidopsis thaliana
sequence At5g13980 alpha-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 548
Score = 95.9 bits (203), Expect(3) = 5e-027
Identities = 33/67 (49%), Positives = 49/67 (73%)
Frame = +3 / +2
Query: 378 VYKEKDFLETEFIVGPIPVDDGNGKEVATEIVTNMVTNKTFYTDSSGRDFIKRIRDYRSE 557
+YK + E +F+VGPIP DD GKE+ +TN+ +N F+TDS+GRDF+KRIR+YR
Sbjct: 344 LYKNAEDAEIDFLVGPIPXDDNLGKEIVVRFMTNLSSNGEFFTDSNGRDFLKRIRNYRKX 523
Query: 558 WKIEVHQ 578
W +++H+
Sbjct: 524 WDLDIHE 544
Score = 35.0 bits (70), Expect(3) = 5e-027
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2 / +2
Query: 293 QVSLTVLRGPILDEVHQQINSWIYQITR 376
Q +V+ G I+ EVHQQ + W+ Q+ R
Sbjct: 260 QAIQSVIHGDIVSEVHQQFSPWVSQVVR 343
Score = 29.5 bits (58), Expect(3) = 5e-027
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2 / +2
Query: 233 QASGAYIFRPNGT 271
QASGAY+FRPN +
Sbjct: 191 QASGAYVFRPNSS 229
>gb|BI397535.1|BI397535 NXPV_100_D10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_D10 5' similar to Arabidopsis
thaliana sequence At5g66150 alpha-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 470
Score = 111 bits (236), Expect(2) = 1e-026
Identities = 48/110 (43%), Positives = 69/110 (62%)
Frame = +3 / +1
Query: 852 WRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQELEDGSVL 1031
WRRT G + PL + F D + ++SAM + Y LP N+A++TLQELED L
Sbjct: 7 WRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTL 186
Query: 1032 LRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIETSLSANQERAAME 1181
LR AHLYE GE SS+A +DL+ +F +KI +++E +LSA Q ++ M+
Sbjct: 187 LRLAHLYEVGESDKFSSIARVDLQNLFSRRKIKEIVELNLSAVQNKSEMK 336
Score = 29.9 bits (59), Expect(2) = 1e-026
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3 / +1
Query: 1248 VDPSKLVVELGPMEIRTFIVSF 1313
+ + ++EL PMEIRTF + F
Sbjct: 400 IKDEEYIIELAPMEIRTFQIEF 465
>gb|DR388879.1|DR388879 RTHG1_31_B08.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_31_B08_A029 3', mRNA sequence
Length = 752
Score = 98.2 bits (208), Expect(2) = 8e-024
Identities = 40/92 (43%), Positives = 61/92 (66%)
Frame = +3 / +2
Query: 945 KFSAMDSTYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKK 1124
++SAM Y LP NVA+LTLQELED LLR AHLYE GE S ++D+ ++F ++K
Sbjct: 56 QYSAMAEDYELPSNVAILTLQELEDQQTLLRLAHLYEVGESAIFSKTVTVDIYKLFADRK 235
Query: 1125 IGKVIETSLSANQERAAMEKKRLKWKAQGSAA 1220
+ K++E +LSA E++ M+K K + + + +
Sbjct: 236 VKKIVELNLSAAMEKSQMKKLNWKVEGEDNTS 331
Score = 33.6 bits (67), Expect(2) = 8e-024
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 1227 KVVRGGPVDPSKLVVELGPMEIRTFIVSFD 1316
K++ + + ++EL PMEIRTF + FD
Sbjct: 335 KIINKKSIKDGEHIIELSPMEIRTFQLQFD 424
>gb|DR080217.1|DR080217 RTFEPL1_21_E03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_21_E03_A029 3', mRNA sequence
Length = 718
Score = 101 bits (216), Expect(2) = 1e-023
Identities = 46/108 (42%), Positives = 67/108 (62%)
Frame = +3 / +3
Query: 858 RTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQELEDGSVLLR 1037
RT G + PL + F D + ++SAM + Y LP N+A++TLQELED LLR
Sbjct: 3 RTKGLKAALPLQILFATIDEEEVNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTLLR 182
Query: 1038 FAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIETSLSANQERAAME 1181
AHLYE GE SS+A +DL+ +F +KI +++E +LSA Q ++ M+
Sbjct: 183 LAHLYEVGESDKFSSIARVDLQSLFSRRKIKEIVELNLSAVQNKSEMK 326
Score = 29.5 bits (58), Expect(2) = 1e-023
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3 / +3
Query: 1227 KVVRGGPVDPSKLVVELGPMEIRTFIVSF 1313
K + + + ++EL PMEIRTF + F
Sbjct: 369 KPFKRNKIKDEEYIIELAPMEIRTFQLEF 455
>gb|CF478669.1|CF478669 RTWW3_16_D07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_D07_A022 5', mRNA sequence
Length = 740
Score = 84.0 bits (177), Expect(3) = 1e-023
Identities = 31/57 (54%), Positives = 43/57 (75%)
Frame = +3 / +1
Query: 378 VYKEKDFLETEFIVGPIPVDDGNGKEVATEIVTNMVTNKTFYTDSSGRDFIKRIRDY 548
+YK + E +F+VGPIPVDD GKE+ +TN+ +N F+TDS+GRDF+KRIR+Y
Sbjct: 568 LYKNAEDAEIDFLVGPIPVDDNLGKEIVVRFMTNLSSNGEFFTDSNGRDFLKRIRNY 738
Score = 35.4 bits (71), Expect(3) = 1e-023
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2 / +1
Query: 293 QVSLTVLRGPILDEVHQQINSWIYQITR 376
Q +V++G I+ EVHQQ + W+ Q+ R
Sbjct: 484 QAIQSVIQGDIVSEVHQQFSPWVSQVVR 567
Score = 29.5 bits (58), Expect(3) = 1e-023
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2 / +1
Query: 233 QASGAYIFRPNGT 271
QASGAY+FRPN +
Sbjct: 415 QASGAYVFRPNSS 453
>gb|BG317656.1|BG317656 NXPV_004_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_004_C06 5' similar to Arabidopsis
thaliana sequence At5g66150 alpha-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 505
Score = 111 bits (236), Expect = 2e-023
Identities = 48/110 (43%), Positives = 69/110 (62%)
Frame = +3 / +1
Query: 852 WRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQELEDGSVL 1031
WRRT G + PL + F D + ++SAM + Y LP N+A++TLQELED L
Sbjct: 7 WRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTL 186
Query: 1032 LRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIETSLSANQERAAME 1181
LR AHLYE GE SS+A +DL+ +F +KI +++E +LSA Q ++ M+
Sbjct: 187 LRLAHLYEVGESDKFSSIARVDLQNLFSRRKIKEIVELNLSAVQNKSEMK 336
>gb|BG832714.1|BG832714 NXPV_078_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_078_G09 5' similar to Arabidopsis
thaliana sequence At3g26720 alpha-mannosidase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 111 bits (236), Expect = 2e-023
Identities = 48/110 (43%), Positives = 69/110 (62%)
Frame = +3 / +1
Query: 852 WRRTFGQEIYSPLLLAFTEQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQELEDGSVL 1031
WRRT G + PL + F D + ++SAM + Y LP N+A++TLQELED L
Sbjct: 7 WRRTKGLKAALPLQILFATIDEDEMNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTL 186
Query: 1032 LRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIGKVIETSLSANQERAAME 1181
LR AHLYE GE SS+A +DL+ +F +KI +++E +LSA Q ++ M+
Sbjct: 187 LRLAHLYEVGESDKFSSIARVDLQNLFSRRKIKEIVELNLSAVQNKSEMK 336
>gb|DR057271.1|DR057271 RTNIT1_4_F01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_F01_A029 5', mRNA sequence
Length = 685
Score = 100 bits (212), Expect(2) = 3e-023
Identities = 43/99 (43%), Positives = 63/99 (63%)
Frame = +3 / -3
Query: 885 PLLLAFTEQDGGNWANSHVAKFSAMDSTYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGE 1064
PL + F D + ++SAM + Y LP N+A++TLQELED LLR AHLYE GE
Sbjct: 662 PLQILFATIDEDEMNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTLLRLAHLYEVGE 483
Query: 1065 DKDLSSLASIDLKRVFPEKKIGKVIETSLSANQERAAME 1181
SS+A +DL+ +F +KI +++E +LSA Q ++ M+
Sbjct: 482 SDKFSSIARVDLQSLFSRRKIKEIVELNLSAVQNKSEMK 366
Score = 29.9 bits (59), Expect(2) = 3e-023
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3 / -3
Query: 1248 VDPSKLVVELGPMEIRTFIVSF 1313
+ + ++EL PMEIRTF + F
Sbjct: 302 IKDEEYIIELAPMEIRTFQIEF 237
>gb|BE209111.1|BE209111 NXNV_139_H12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_139_H12 5' similar to Arabidopsis thaliana sequence
At5g66150 alpha-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 508
Score = 94.5 bits (200), Expect(2) = 5e-022
Identities = 40/90 (44%), Positives = 58/90 (64%)
Frame = +3 / +3
Query: 951 SAMDSTYSLPDNVAMLTLQELEDGSVLLRFAHLYEAGEDKDLSSLASIDLKRVFPEKKIG 1130
SAM Y LP NVA+LTLQELED LLR AHLYE GE S ++D+ ++F ++K
Sbjct: 3 SAMAEDYELPSNVAILTLQELEDQQTLLRLAHLYEVGESAIFSKTVTVDIYKLFADRKXK 182
Query: 1131 KVIETSLSANQERAAMEKKRLKWKAQGSAA 1220
K++E +LSA E++ M+K K + + + +
Sbjct: 183 KIVELNLSAAMEKSQMKKLNWKVEGEDNTS 272
Score = 31.3 bits (62), Expect(2) = 5e-022
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3 / +3
Query: 1227 KVVRGGPVDPSKLVVELGPMEIRTFIVSFD 1316
K++ + + ++EL PMEIRT + FD
Sbjct: 276 KIINKKSIKDGEHIIELSPMEIRTXXLQFD 365
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 919,956,402
Number of Sequences: 355925
Number of extensions: 14898561
Number of successful extensions: 104012
Number of sequences better than 1.0e-020: 30
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 25911222165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)