TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAZ2b01.yg.2.1
         (541 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BD267330.1|  Compositions isolated from plant cells and ...   144   1e-037

>dbj|BD267330.1| Compositions isolated from plant cells and utilization of the same
           in modifying plant cell signal transduction
          Length = 558

 Score =  144 bits (308), Expect(2) = 1e-037
 Identities = 60/93 (64%), Positives = 79/93 (84%)
 Frame = +3 / +2

                                                                       
Query: 12  LXNDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVL 191
           L N+VLD+AKIE+G+LELE VPF +R+++D V+SLFS+K++ K IELAVFV + VP+ V+
Sbjct: 77  LINEVLDQAKIESGRLELETVPFHIRTVLDSVLSLFSAKTQAKGIELAVFVSERVPEIVI 256

                                            
Query: 192 GDPWRFRQILTNLVGNAVKFTERGHVFVRVCLA 290
           GDP RF+QI+TNLV N+VKFTE GH+FV V LA
Sbjct: 257 GDPGRFQQIITNLVSNSVKFTENGHIFVCVHLA 355




 Score = 94.5 bits (200), Expect(2) = 2e-021
 Identities = 51/93 (54%), Positives = 57/93 (61%)
 Frame = -1 / -1

                                                                       
Query: 289 AKQTRTNT*PRSVNLTALPTKFVSICRNLQGSPRTSFGTLSHTNTASSMHFSRDFEENKE 110
           A+ T+T   P SVNLT L T+ V IC N  GSP T  GTLS TNTASSM  +    E ++
Sbjct: 354 AR*TQTKMCPFSVNLTELETRLVIIC*NRPGSPMTISGTLSDTNTASSMPLACVLAEKRD 175

                                            
Query: 109 ITSSMRERRSKGTASSSNFPASIFARSRTSFXN 11
            T S   R  KGT SSS  P SIFA SRTSF N
Sbjct: 174 KTLSRTVRIWKGTVSSSRRPDSIFAWSRTSFIN 76




 Score = 32.2 bits (64), Expect(2) = 1e-037
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3 / +2

                             
Query: 381 NTLSGFEAAXXRNSWQYF 434
           NTLSG EAA  RN+W+ F
Sbjct: 440 NTLSGSEAADTRNNWESF 493




 Score = 27.2 bits (53), Expect(2) = 2e-021
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1 / -1

                                
Query: 442 SIXKYCQLFRXXAASNPLRVL 380
           +I K  QLF   AAS PLRVL
Sbjct: 501 NILKDSQLFLVSAASEPLRVL 439



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 248,375,287
Number of Sequences: 355925
Number of extensions: 3440083
Number of successful extensions: 36098
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6947016960
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)