TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 147 2e-058
gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C fo... 147 2e-058
gb|DT634385.1|DT634385 EST1149316 Normalized pine embryo li... 147 2e-058
gb|DR687799.1|DR687799 EST1077881 Normalized pine embryo li... 147 2e-058
gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control P... 147 2e-058
gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus cal... 176 5e-057
gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control P... 175 9e-057
gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered lob... 175 9e-057
gb|DR691145.1|DR691145 EST1081231 Normalized pine embryo li... 147 4e-055
gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus adde... 169 7e-055
gb|CO169954.1|CO169954 NDL1_10_E11.g1_A029 Needles control ... 153 3e-054
gb|CF473575.1|CF473575 RTWW2_3_H10.g1_A021 Well-watered lob... 190 9e-054
gb|BX251956.1|BX251956 BX251956 Pinus pinaster differenciat... 127 1e-051
gb|DR080995.1|DR080995 RTFEPL1_26_D08.g1_A029 Roots plus ad... 131 2e-050
gb|CX650887.1|CX650887 COLD1_48_F06.g1_A029 Root cold Pinus... 135 4e-048
gb|DR387499.1|DR387499 RTHG1_22_E08.b1_A029 Roots plus adde... 190 7e-048
gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch... 159 6e-046
gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus ad... 138 8e-046
gb|DR690457.1|DR690457 EST1080543 Normalized pine embryo li... 84 1e-045
gb|DR118138.1|DR118138 RTMG1_11_H09.b1_A029 Roots minus mag... 180 6e-045
gb|CF478204.1|CF478204 RTWW3_19_D01.g1_A022 Well-watered lo... 116 5e-044
gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch... 175 2e-043
gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus adde... 175 2e-043
gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clon... 171 4e-042
gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C fo... 170 6e-042
gb|BX249328.1|BX249328 BX249328 Pinus pinaster differenciat... 113 7e-042
gb|CF671491.1|CF671491 RTCNT1_57_A06.g1_A029 Root control P... 91 3e-038
gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response R... 156 1e-037
gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2... 77 2e-037
gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus adde... 151 3e-036
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 148 3e-035
dbj|BD273078.1| Materials and methods for the modification ... 87 3e-035
gb|CF478205.1|CF478205 RTWW3_19_F12.g1_A022 Well-watered lo... 84 1e-032
gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control ... 64 1e-032
gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus cal... 139 1e-032
gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pin... 97 3e-030
gb|BE657071.1|BE657071 NXCI_042_A09_F NXCI (Nsf Xylem Compr... 130 6e-030
gb|DT636147.1|DT636147 EST1151078 Normalized pine embryo li... 82 7e-029
dbj|BD224351.1| Materials and methods for the modification ... 126 1e-028
dbj|BD224414.1| Materials and methods for the modification ... 126 1e-028
dbj|BD272979.1| Materials and methods for the modification ... 83 6e-028
gb|AI812611.1|AI812611 17A5 Pine Lambda Zap Xylem library P... 72 4e-027
gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip libra... 119 1e-026
gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine ro... 113 1e-024
gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus m... 111 4e-024
gb|DR019937.1|DR019937 STRS1_33_B04.g1_A034 Shoot tip pitch... 71 4e-024
gb|DN615181.1|DN615181 EST968231 Subtracted pine embryo lib... 109 1e-023
gb|DT629430.1|DT629430 EST1156000 Subtracted pine embryo li... 109 1e-023
gb|DN611254.1|DN611254 EST964304 Subtracted pine embryo lib... 108 4e-023
gb|DN615142.1|DN615142 EST968192 Subtracted pine embryo lib... 108 4e-023
gb|DR743237.1|DR743237 RTCU1_14_B08.g1_A029 Roots plus adde... 103 8e-022
gb|DR388562.1|DR388562 RTHG1_29_B07.b1_A029 Roots plus adde... 102 2e-021
dbj|BD224417.1| Materials and methods for the modification ... 81 1e-020
dbj|BD224355.1| Materials and methods for the modification ... 81 1e-020
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 147 bits (316), Expect(3) = 2e-058
Identities = 51/100 (51%), Positives = 73/100 (73%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 525 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 704
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRVK+W T NEPNL L Y+ FPP C+ P+
Sbjct: 705 CFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPH 824
Score = 87.2 bits (184), Expect(3) = 2e-058
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 387 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 524
Score = 29.5 bits (58), Expect(3) = 2e-058
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 466 SSTXXYIXAHNMILAHAKXXNIYR 537
SS Y+ AH+++LAHA YR
Sbjct: 855 SSAEPYLAAHHVLLAHASAVEKYR 926
>gb|DR014719.1|DR014719 HEAT1_51_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 3', mRNA sequence
Length = 838
Score = 147 bits (316), Expect(3) = 2e-058
Identities = 51/100 (51%), Positives = 73/100 (73%)
Frame = +1 / -3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 470 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 291
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRVK+W T NEPNL L Y+ FPP C+ P+
Sbjct: 290 CFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPH 171
Score = 87.2 bits (184), Expect(3) = 2e-058
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / -3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 608 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 471
Score = 29.5 bits (58), Expect(3) = 2e-058
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / -3
Query: 466 SSTXXYIXAHNMILAHAKXXNIYR 537
SS Y+ AH+++LAHA YR
Sbjct: 140 SSAEPYLAAHHVLLAHASAVEKYR 69
>gb|DT634385.1|DT634385 EST1149316 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG541 3' end, mRNA sequence
Length = 820
Score = 147 bits (316), Expect(3) = 2e-058
Identities = 51/100 (51%), Positives = 73/100 (73%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 390 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 569
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRVK+W T NEPNL L Y+ FPP C+ P+
Sbjct: 570 CFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPH 689
Score = 87.2 bits (184), Expect(3) = 2e-058
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 252 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 389
Score = 29.5 bits (58), Expect(3) = 2e-058
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 466 SSTXXYIXAHNMILAHAKXXNIYR 537
SS Y+ AH+++LAHA YR
Sbjct: 720 SSAEPYLAAHHVLLAHASAVEKYR 791
>gb|DR687799.1|DR687799 EST1077881 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABW68 3' end, mRNA sequence
Length = 801
Score = 147 bits (316), Expect(3) = 2e-058
Identities = 51/100 (51%), Positives = 73/100 (73%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 382 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 561
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRVK+W T NEPNL L Y+ FPP C+ P+
Sbjct: 562 CFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPH 681
Score = 87.2 bits (184), Expect(3) = 2e-058
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 244 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 381
Score = 29.5 bits (58), Expect(3) = 2e-058
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 466 SSTXXYIXAHNMILAHAKXXNIYR 537
SS Y+ AH+++LAHA YR
Sbjct: 712 SSAEPYLAAHHVLLAHASAVEKYR 783
>gb|CF671986.1|CF671986 RTCNT1_60_C07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 5', mRNA sequence
Length = 792
Score = 147 bits (316), Expect(3) = 2e-058
Identities = 51/100 (51%), Positives = 73/100 (73%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 234 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 413
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRVK+W T NEPNL L Y+ FPP C+ P+
Sbjct: 414 CFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPH 533
Score = 87.2 bits (184), Expect(3) = 2e-058
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 96 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 233
Score = 29.5 bits (58), Expect(3) = 2e-058
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 466 SSTXXYIXAHNMILAHAKXXNIYR 537
SS Y+ AH+++LAHA YR
Sbjct: 564 SSAEPYLAAHHVLLAHASAVEKYR 635
>gb|DR054674.1|DR054674 RTCA1_18_G02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G02_A029 5', mRNA sequence
Length = 784
Score = 176 bits (378), Expect(2) = 5e-057
Identities = 65/131 (49%), Positives = 87/131 (66%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 202 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEF 381
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++
Sbjct: 382 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLL 561
Query: 505 LAHAKXXNIYR 537
L+HA IYR
Sbjct: 562 LSHATAVKIYR 594
Score = 65.2 bits (136), Expect(2) = 5e-057
Identities = 22/45 (48%), Positives = 32/45 (71%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV+ D YH YK D+E+M + + +YRFS+SWSRI PKG
Sbjct: 64 VANNATADVSVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKG 198
>gb|CF666831.1|CF666831 RTCNT1_26_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_A11_A029 5', mRNA sequence
Length = 860
Score = 175 bits (377), Expect(2) = 9e-057
Identities = 65/131 (49%), Positives = 87/131 (66%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 391 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 570
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++
Sbjct: 571 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLL 750
Query: 505 LAHAKXXNIYR 537
L+HA IYR
Sbjct: 751 LSHATAVKIYR 783
Score = 64.8 bits (135), Expect(2) = 9e-057
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV D YH YK D+E+M + + +YRFS+SWSRI PKG
Sbjct: 253 VANNATADVTVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKG 387
>gb|CF477776.1|CF477776 RTWW3_9_B03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 5', mRNA sequence
Length = 735
Score = 175 bits (377), Expect(2) = 9e-057
Identities = 65/131 (49%), Positives = 87/131 (66%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 329 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 508
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++
Sbjct: 509 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLL 688
Query: 505 LAHAKXXNIYR 537
L+HA IYR
Sbjct: 689 LSHATAVKIYR 721
Score = 64.8 bits (135), Expect(2) = 9e-057
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV D YH YK D+E+M + + +YRFS+SWSRI PKG
Sbjct: 191 VANNATADVTVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKG 325
>gb|DR691145.1|DR691145 EST1081231 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD479 3' end, mRNA sequence
Length = 748
Score = 147 bits (316), Expect(2) = 4e-055
Identities = 51/100 (51%), Positives = 73/100 (73%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 374 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 553
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CF+ FGDRVK+W T NEPNL L Y+ FPP C+ P+
Sbjct: 554 CFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPH 673
Score = 87.2 bits (184), Expect(2) = 4e-055
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 236 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 373
>gb|DR091066.1|DR091066 RTAL1_19_E03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_E03_A029 3', mRNA sequence
Length = 774
Score = 169 bits (363), Expect(2) = 7e-055
Identities = 62/124 (50%), Positives = 84/124 (67%)
Frame = +1 / -2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 380 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 201
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++
Sbjct: 200 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLL 21
Query: 505 LAHA 516
L+HA
Sbjct: 20 LSHA 9
Score = 64.8 bits (135), Expect(2) = 7e-055
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / -2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV D YH YK D+E+M + + +YRFS+SWSRI PKG
Sbjct: 518 VANNATADVTVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKG 384
>gb|CO169954.1|CO169954 NDL1_10_E11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_E11_A029 5', mRNA sequence
Length = 683
Score = 153 bits (328), Expect(2) = 3e-054
Identities = 56/119 (47%), Positives = 77/119 (64%)
Frame = +1 / +3
Query: 181 SLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHW 360
+LIN L+ GI+P+VT+ H+D+P+ LQ+ Y WL+ +I +DFT FA +CF FGDRV++W
Sbjct: 324 NLINELVYHGIEPYVTLYHFDLPQSLQDEYGGWLSRQIVDDFTVFANVCFVEFGDRVRNW 503
Query: 361 VTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
+TFNEPN Y F P CS + +GNSS YI HN++LAHA +YR
Sbjct: 504 MTFNEPNFFSMSGYGSDIFAPQRCSPAFGNCSAGNSSVEPYIVGHNVLLAHAAVVELYR 680
Score = 79.0 bits (166), Expect(2) = 3e-054
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +1 / +3
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGS D+ D YHRYK+D+E+MH +G+ +YR S+SWSR+LP G+
Sbjct: 153 DGSTADITVDQYHRYKEDVELMHQLGIDAYRLSISWSRLLPDGK 284
>gb|CF473575.1|CF473575 RTWW2_3_H10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_H10_A021 5', mRNA sequence
Length = 728
Score = 190 bits (410), Expect(2) = 9e-054
Identities = 71/143 (49%), Positives = 95/143 (66%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS+SWSRI P G VN+ G+ +YN+LI
Sbjct: 202 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLI 381
Query: 190 NGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTF 369
+ LL+KG++P VT+ H+D+P++L E WLN EI F +AE CF FGDRVK W+T
Sbjct: 382 DTLLQKGVRPSVTLYHWDLPQKLHESMGGWLNREIVNYFALYAETCFSAFGDRVKQWITL 561
Query: 370 NEPNLIXKLAYSXXAFPPNXCSE 438
NEP Y+ F P CS+
Sbjct: 562 NEPLQTAVNGYATGIFAPGRCSD 630
Score = 98.2 bits (208), Expect(2) = 3e-022
Identities = 42/124 (33%), Positives = 78/124 (62%)
Frame = -2 / -3
Query: 375 LIECDPMLYSVTKXLEAKLSEVGEVLLNL*VQPRIVSFLEFFRYVIVVDRHKWLYPFF*Q 196
LI+C P+ YSVT+ +A EV+ N ++P F++F R + +V R++W Y F +
Sbjct: 567 LIQCYPLFYSVTECAKACFCIQCEVVYNFSIKPSTH*FMKFLRKIPMVQRYRWSYTFLQK 388
Query: 195 SVDEAIVEFNACLINTSEATLWKNSRP*Q*ESVRAEANRMHHFYVVLVSMIMVSSHVAIA 16
S++E +V + LI+ S ++WK+SRP *E++ E++ + +++LV M+++ ++ I+
Sbjct: 387 SINEVVVVCYSFLIHFSSKSIWKDSRPRY*ETIHIESHFCY*IHILLVPMVLIHCNITIS 208
Query: 15 SIVN 4
SI N
Sbjct: 207 SIKN 196
Score = 39.6 bits (80), Expect(2) = 9e-054
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1 / +1
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYR 537
G+SST Y+ AHN +LAHA +IYR
Sbjct: 649 GDSSTEPYLVAHNQLLAHAAAVDIYR 726
Score = 26.3 bits (51), Expect(2) = 3e-022
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3 / -1
Query: 539 FL*MLXXFA*ANIMLCAXMXXSVDEXP 459
FL*+ A*A LCA SVDE P
Sbjct: 728 FL*ISTAAA*ARS*LCATKYGSVDESP 648
>gb|BX251956.1|BX251956 BX251956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP057G03, mRNA sequence
Length = 673
Score = 127 bits (271), Expect(3) = 1e-051
Identities = 45/99 (45%), Positives = 68/99 (68%)
Frame = +1 / +3
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFA 318
R GGVN+ G+ +YN+LIN LL+ G++PFVT+ H+D+P+ L++ Y + + ++ +DF F+
Sbjct: 285 RQGGVNKEGIAYYNNLINELLKNGVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFS 464
Query: 319 ELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCS 435
E CF+ FGDRVK+WVT NEP + +Y P CS
Sbjct: 465 EECFRAFGDRVKYWVTVNEPLIFSYFSYDVGLHAPGRCS 581
Score = 78.5 bits (165), Expect(3) = 1e-051
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I DG NGD+A D YHRYKDD+ ++ +G+ YRFS+SWSRI P G
Sbjct: 144 IADGKNGDIAVDQYHRYKDDVRLLKYMGMNMYRFSISWSRIFPMG 278
Score = 35.9 bits (72), Expect(3) = 1e-051
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1 / +2
Query: 457 SGNSSTXXYIXAHNMILAHA 516
+GNS+T YI AHNM+LAH+
Sbjct: 602 AGNSATEPYIVAHNMLLAHS 661
>gb|DR080995.1|DR080995 RTFEPL1_26_D08.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 5', mRNA sequence
Length = 691
Score = 131 bits (281), Expect(2) = 2e-050
Identities = 46/86 (53%), Positives = 65/86 (75%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 434 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 613
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAY 402
CF+ FGDRVK+W T NEPNL L Y
Sbjct: 614 CFRAFGDRVKYWATVNEPNLFVPLGY 691
Score = 87.2 bits (184), Expect(2) = 2e-050
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 296 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 433
>gb|CX650887.1|CX650887 COLD1_48_F06.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_F06_A029 5', mRNA sequence
Length = 778
Score = 135 bits (289), Expect(2) = 4e-048
Identities = 52/116 (44%), Positives = 73/116 (62%)
Frame = +1 / +2
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFA 318
R G VN+ G+ +YN+ IN LL GI+PFVT+ H+D+P+ L++ Y + + + EDF+ FA
Sbjct: 431 RHGPVNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFA 610
Query: 319 ELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYI 486
E CF+ FGDRVK+WVT NEP + Y P CS + +GNS+T YI
Sbjct: 611 EECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIHAPGRCSAGFGNCTAGNSATEPYI 778
Score = 76.2 bits (160), Expect(2) = 4e-048
Identities = 26/43 (60%), Positives = 35/43 (81%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILP 132
I DG NGDVA D YHRYK+D++++ ++G+ YRFS+SWSRI P
Sbjct: 207 IADGKNGDVAVDQYHRYKEDVQLLKNMGMDVYRFSISWSRIFP 335
>gb|DR387499.1|DR387499 RTHG1_22_E08.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_E08_A029 3', mRNA sequence
Length = 657
Score = 190 bits (409), Expect = 7e-048
Identities = 71/143 (49%), Positives = 95/143 (66%)
Frame = +1 / -3
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS+SWSRI P G VN+ G+ +YN+LI
Sbjct: 436 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLI 257
Query: 190 NGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTF 369
+ LL+KG++P VT+ H+D+P++L E WLN EI F +AE CF FGDRVK W+T
Sbjct: 256 DTLLQKGVRPSVTLYHWDLPQKLHESMGGWLNREIVNYFALYAETCFSAFGDRVKQWITL 77
Query: 370 NEPNLIXKLAYSXXAFPPNXCSE 438
NEP Y+ F P CS+
Sbjct: 76 NEPLQTAINGYATGIFAPGRCSD 8
>gb|DR024643.1|DR024643 STRS1_66_A03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 5', mRNA sequence
Length = 448
Score = 159 bits (342), Expect(2) = 6e-046
Identities = 59/121 (48%), Positives = 80/121 (66%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 84 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 263
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AH ++
Sbjct: 264 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTTGNSATEPYIVAHYLL 443
Query: 505 L 507
L
Sbjct: 444 L 446
Score = 44.6 bits (91), Expect(2) = 6e-046
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1 / +3
Query: 61 DIEMMHSIGLGSYRFSLSWSRILPKG 138
D+E+M + + +YRFS+SWSRI PKG
Sbjct: 3 DVELMVKMNMDAYRFSISWSRIFPKG 80
>gb|DR081573.1|DR081573 RTFEPL1_30_D11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 5', mRNA sequence
Length = 678
Score = 138 bits (297), Expect(2) = 8e-046
Identities = 50/100 (50%), Positives = 67/100 (67%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 369 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 548
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPY 444
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+
Sbjct: 549 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPF 668
Score = 64.8 bits (135), Expect(2) = 8e-046
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV D YH YK D+E+M + + +YRFS+SWSRI PKG
Sbjct: 231 VANNATADVTVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKG 365
>gb|DR690457.1|DR690457 EST1080543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACV28 3' end, mRNA sequence
Length = 915
Score = 84.5 bits (178), Expect(3) = 1e-045
Identities = 31/63 (49%), Positives = 43/63 (68%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 540 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 719
Query: 325 CFK 333
CFK
Sbjct: 720 CFK 728
Score = 73.9 bits (155), Expect(3) = 1e-045
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +1 / +2
Query: 337 FGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHA 516
FGDR +TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++L+HA
Sbjct: 731 FGDR*NTGMTFNEPRVVAALGYDNGIFAPGMCSAPFGNCTAGNSATEPYIVAHNLLLSHA 910
Score = 63.4 bits (132), Expect(3) = 1e-045
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV D YH YK D+++M + + +YRFS+SWSRI PKG
Sbjct: 402 VANNATADVTVDEYHLYKSDVQLMVKMNMDAYRFSISWSRIFPKG 536
>gb|DR118138.1|DR118138 RTMG1_11_H09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_H09_A029 3', mRNA sequence
Length = 656
Score = 180 bits (388), Expect = 6e-045
Identities = 66/123 (53%), Positives = 88/123 (71%)
Frame = +1 / -1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS+SWSRI P G VN+ G+ +YN+LI
Sbjct: 401 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLI 222
Query: 190 NGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTF 369
+ LL+KG++P VT+ H+D+P++L E WLN EI F +AE CF FGDRVK W+T
Sbjct: 221 DTLLQKGVRPSVTLYHWDLPQKLHELMGGWLNREIVNYFALYAETCFSAFGDRVKQWITL 42
Query: 370 NEP 378
NEP
Sbjct: 41 NEP 33
>gb|CF478204.1|CF478204 RTWW3_19_D01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_D01_A022 5', mRNA sequence
Length = 620
Score = 116 bits (248), Expect(2) = 5e-044
Identities = 42/80 (52%), Positives = 59/80 (73%)
Frame = +1 / +1
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFA 318
R G VN+ G+ +YN+ IN LL GI+PFVT+ H+D+P+ L++ Y + + + EDF+ FA
Sbjct: 352 RHGPVNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFA 531
Query: 319 ELCFKXFGDRVKHWVTFNEP 378
E CF+ FGDRVK+WVT NEP
Sbjct: 532 EECFRAFGDRVKYWVTVNEP 591
Score = 81.3 bits (171), Expect(2) = 5e-044
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I DG NGDVA D YHRYK+D++++ ++G+ YRFS+SWSRI PKG
Sbjct: 211 IADGKNGDVAVDQYHRYKEDVQLLKNMGMDVYRFSISWSRIFPKG 345
>gb|DR019714.1|DR019714 STRS1_31_H11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 5', mRNA sequence
Length = 739
Score = 175 bits (377), Expect = 2e-043
Identities = 65/131 (49%), Positives = 87/131 (66%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 16 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 195
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++
Sbjct: 196 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLL 375
Query: 505 LAHAKXXNIYR 537
L+HA IYR
Sbjct: 376 LSHATAVKIYR 408
>gb|DR091853.1|DR091853 RTAL1_24_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_A01_A029 5', mRNA sequence
Length = 788
Score = 175 bits (377), Expect = 2e-043
Identities = 65/131 (49%), Positives = 87/131 (66%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 29 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 208
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMI 504
CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++
Sbjct: 209 CFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLL 388
Query: 505 LAHAKXXNIYR 537
L+HA IYR
Sbjct: 389 LSHATAVKIYR 421
>gb|BX680137.1|BX680137 BX680137 RS Pinus pinaster cDNA clone RS39F11, mRNA sequence
Length = 388
Score = 171 bits (367), Expect = 4e-042
Identities = 63/125 (50%), Positives = 84/125 (67%)
Frame = +1 / +1
Query: 163 GVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFG 342
GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE CFK FG
Sbjct: 7 GVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFG 186
Query: 343 DRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKX 522
DRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++L+HA
Sbjct: 187 DRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATA 366
Query: 523 XNIYR 537
IYR
Sbjct: 367 VKIYR 381
>gb|DR013664.1|DR013664 HEAT1_20_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 5', mRNA sequence
Length = 726
Score = 170 bits (366), Expect = 6e-042
Identities = 63/125 (50%), Positives = 84/125 (67%)
Frame = +1 / +2
Query: 163 GVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFG 342
GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE CFK FG
Sbjct: 17 GVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFG 196
Query: 343 DRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKX 522
DRVK+W+TFNEP ++ L Y F P CS P+ +GNS+T YI AHN++L+HA
Sbjct: 197 DRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATA 376
Query: 523 XNIYR 537
IYR
Sbjct: 377 VKIYR 391
>gb|BX249328.1|BX249328 BX249328 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022G02, mRNA sequence
Length = 671
Score = 113 bits (242), Expect(2) = 7e-042
Identities = 45/97 (46%), Positives = 62/97 (63%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N+ GV +YN+LIN LLE GIQ VT+ H+D P+ L++ Y +L+ + D+T +AE
Sbjct: 364 GEINEEGVAYYNNLINELLENGIQVSVTLFHWDAPQCLEDEYGGFLSPCMVTDYTAYAET 543
Query: 325 CFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCS 435
CF+ FGDRVK W+TFNEP L+ Y P S
Sbjct: 544 CFRLFGDRVKQWITFNEPYLVCYFGYDRGLHAPGHSS 654
Score = 76.7 bits (161), Expect(2) = 7e-042
Identities = 27/46 (58%), Positives = 37/46 (80%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I DGSNGDVA D YHRYK+D++++ +G+ YRFS+SWSR+ KG+
Sbjct: 226 IVDGSNGDVAVDQYHRYKEDVKLIKDMGVDVYRFSISWSRMFSKGK 363
>gb|CF671491.1|CF671491 RTCNT1_57_A06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_A06_A029 5', mRNA sequence
Length = 689
Score = 91.3 bits (193), Expect(2) = 3e-038
Identities = 31/62 (50%), Positives = 48/62 (77%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N AG+++YN+LI+ LL+ GIQPFVT+ H+D+P+ L++ Y WL+ +I DF +AE+
Sbjct: 504 GEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEI 683
Query: 325 CF 330
CF
Sbjct: 684 CF 689
Score = 87.2 bits (184), Expect(2) = 3e-038
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
I D SNGDVA D YHRY +DIE+M S+GL +YRFS+SWSRILP+GR
Sbjct: 366 IKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGR 503
>gb|DR094305.1|DR094305 STRR1_13_F01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_F01_A033 5', mRNA sequence
Length = 850
Score = 156 bits (335), Expect = 1e-037
Identities = 60/133 (45%), Positives = 83/133 (62%)
Frame = +1 / +3
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFA 318
R G VN+ G+ +YN+ IN LL GI+PFVT+ H+D+P+ L++ Y + + + EDF+ FA
Sbjct: 30 RHGPVNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFA 209
Query: 319 ELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHN 498
E CF+ FGDRVK+WVT NEP + Y P CS + +GNS+T YI HN
Sbjct: 210 EECFRAFGDRVKYWVTVNEPLVFSLGGYDLGIHAPGRCSAGFGNCTAGNSATEPYIVTHN 389
Query: 499 MILAHAKXXNIYR 537
M+LAH +YR
Sbjct: 390 MLLAHRAVVKLYR 428
>gb|CO362034.1|CO362034 NDL2_8_E08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 5', mRNA sequence
Length = 729
Score = 76.7 bits (161), Expect(3) = 2e-037
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1 / +2
Query: 13 GSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
G+NGDVA D YHRYK+D+E + +G+ YRFS+SWSRI PKG
Sbjct: 2 GNNGDVAVDQYHRYKEDVERLKYMGMDVYRFSISWSRIFPKG 127
Score = 70.3 bits (147), Expect(3) = 2e-037
Identities = 24/52 (46%), Positives = 39/52 (75%)
Frame = +1 / +2
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEI 294
R GGVNQ G+ +YN+LIN LL I+PF+T+ H+D+P+ L++ Y +L+ ++
Sbjct: 134 RHGGVNQEGIAYYNNLINELLNNDIEPFITLFHWDLPQALEDEYMGFLSQKV 289
Score = 46.4 bits (95), Expect(3) = 2e-037
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1 / +1
Query: 400 YSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
Y A P CS + +G+S+T YI HNM+LAH+ IY+
Sbjct: 313 YDVGADAPGRCSPGFGNCTAGDSATEPYIVGHNMLLAHSAAVKIYK 450
>gb|DR091441.1|DR091441 RTAL1_21_D07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_21_D07_A029 5', mRNA sequence
Length = 831
Score = 151 bits (325), Expect = 3e-036
Identities = 57/128 (44%), Positives = 82/128 (64%)
Frame = +1 / +2
Query: 154 NQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFK 333
++ G+ +YN+LIN LL GI+PFVT+ H+D+P+ L++ Y + + + EDF+ FAE CF+
Sbjct: 2 HKVGIVYYNNLINELLRNGIEPFVTLFHWDMPQALEDEYGGFRSKRVVEDFSIFAEECFR 181
Query: 334 XFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAH 513
FGDRVK+WVT NEP + Y P CS + +GNS+T YI HNM+LAH
Sbjct: 182 AFGDRVKYWVTVNEPLVFSVGGYDLAIHAPGRCSAGFGNCTAGNSATEPYIVTHNMLLAH 361
Query: 514 AKXXNIYR 537
+ +YR
Sbjct: 362 SAVVKLYR 385
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 148 bits (318), Expect = 3e-035
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +1 / -2
Query: 205 KGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNL 384
+GI P+ + HYD+PE L+ Y LN + ED+ FAE CFK FGDRVK+W+TFNEP +
Sbjct: 909 RGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRV 730
Query: 385 IXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
+ L Y F P CS P+ +GNS+T YI AHN++L+HA IYR
Sbjct: 729 VAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYR 577
>dbj|BD273078.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 385
Score = 86.8 bits (183), Expect(2) = 3e-035
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +1 / +3
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFA 318
R G VN+ G+ +YN+ IN LL GI+PFVT+ H+D+P+ L++ Y + N + EDF FA
Sbjct: 186 RHGPVNKVGIVYYNNFINELLRNGIEPFVTLFHWDMPQALEDEYGGFRNKRVVEDFNIFA 365
Query: 319 ELCFK 333
E CF+
Sbjct: 366 EACFR 380
Score = 81.3 bits (171), Expect(2) = 3e-035
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I DG NGDVA D YHRYK+D++++ ++G+ YRFS+SWSRI PKG
Sbjct: 45 IADGKNGDVAVDQYHRYKEDVQLLKNMGMDVYRFSISWSRIFPKG 179
>gb|CF478205.1|CF478205 RTWW3_19_F12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_F12_A022 5', mRNA sequence
Length = 720
Score = 84.5 bits (178), Expect(2) = 1e-032
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +1 / +2
Query: 208 GIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNE 375
GI+PFVT+ H+D+P+ L++ Y + + + EDF FAE+CF+ FGDRVK+W T NE
Sbjct: 521 GIEPFVTLYHWDMPQVLEDEYGGFRSKRVVEDFGRFAEVCFRAFGDRVKYWTTVNE 688
Score = 76.7 bits (161), Expect(2) = 1e-032
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +1 / +3
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I DG+NGDVA D YHRYK DI+++ +G+ YRFS+SW RI PKG
Sbjct: 204 IVDGTNGDVAVDQYHRYKGDIQLLKYMGMDVYRFSISWPRIFPKG 338
>gb|CO174896.1|CO174896 NDL1_47_A06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_47_A06_A029 3', mRNA sequence
Length = 596
Score = 63.8 bits (133), Expect(4) = 1e-032
Identities = 24/45 (53%), Positives = 27/45 (60%)
Frame = +1 / -1
Query: 301 DFTYFAELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCS 435
DF +AE CF+ FGDRVKHW+TFNEP I Y P CS
Sbjct: 410 DFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCS 276
Score = 60.6 bits (126), Expect(4) = 1e-032
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = +1 / -2
Query: 151 VNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYN 273
+N+AG+ +YN+LI+ LL KGI P+VT+ H+D+P+ L++ Y+
Sbjct: 538 INKAGLDYYNALIDTLLAKGIDPYVTLYHWDLPQALEDAYD 416
Score = 42.8 bits (87), Expect(4) = 1e-032
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +1 / -1
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNSST YI AHN++L+HA +IYR
Sbjct: 251 AGNSSTEPYIVAHNLLLSHAAAVDIYR 171
Score = 27.6 bits (54), Expect(4) = 1e-032
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1 / -2
Query: 94 SYRFSLSWSRILPKG 138
+YRFS+SWSR+ G
Sbjct: 592 TYRFSISWSRLFLNG 548
>gb|DR055655.1|DR055655 RTCA1_25_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 3', mRNA sequence
Length = 696
Score = 139 bits (298), Expect = 1e-032
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +1 / -3
Query: 211 IQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLIX 390
+ + HYD+PE L+ Y LN + ED+ FAE CFK FGDRVK+W+TFNEP ++
Sbjct: 691 VSALCNLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVA 512
Query: 391 KLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
L Y F P CS P+ +GNS+T YI AHN++L+HA IYR
Sbjct: 511 ALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYR 365
>gb|CO164857.1|CO164857 FLD1_50_F04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 5', mRNA sequence
Length = 873
Score = 96.8 bits (205), Expect(3) = 3e-030
Identities = 34/72 (47%), Positives = 49/72 (68%)
Frame = +1 / +1
Query: 208 GIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLI 387
GI+P+VT+ H+D+P+ L++ Y WL+ +I ED+ FAE CF+ FGDRVK+W+TFNEP+
Sbjct: 85 GIEPYVTLYHWDLPQALEDAYKGWLSSKIIEDYAKFAETCFEKFGDRVKNWMTFNEPHTF 264
Query: 388 XKLAYSXXAFPP 423
Y P
Sbjct: 265 AIQGYDIGLSAP 300
Score = 43.7 bits (89), Expect(3) = 3e-030
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +1 / +1
Query: 457 SGNSSTXXYIXAHNMILAHAKXXNIYR 537
+GNS+T YI AHN++L+HAK +IYR
Sbjct: 340 AGNSATEPYIVAHNVLLSHAKTVDIYR 420
Score = 29.0 bits (57), Expect(3) = 3e-030
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1 / +3
Query: 145 GGVNQAGVKFYNSLINGLLE 204
G +NQAG YN I+ LLE
Sbjct: 21 GDINQAGFDHYNKFIDALLE 80
>gb|BE657071.1|BE657071 NXCI_042_A09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_042_A09 5' similar to Arabidopsis
thaliana sequence At4g21760 beta-glucosidase -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 300
Score = 130 bits (279), Expect = 6e-030
Identities = 51/99 (51%), Positives = 65/99 (65%)
Frame = +1 / +2
Query: 205 KGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNL 384
+GIQPFVT+ HYDIP+ L++ Y WL+ I +D+T +A CFK FG RVK+W TFNEPN+
Sbjct: 2 RGIQPFVTLCHYDIPQALEDLYGGWLSPNIIDDYTLYAXACFKNFGGRVKYWSTFNEPNI 181
Query: 385 IXKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNM 501
Y +PP CS +GNSS YI AHN+
Sbjct: 182 FVPXXYDAGKYPPARCSTVLGXCRAGNSSXXXYIAAHNI 298
>gb|DT636147.1|DT636147 EST1151078 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO51 3' end, mRNA sequence
Length = 735
Score = 82.2 bits (173), Expect(2) = 7e-029
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +1 / +2
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAEL 324
G +N GV++YN+LIN LL++GI P+ + HYD+PE L+ Y LN + ED+ FAE
Sbjct: 548 GRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEGLETAYGGLLNSRVVEDYAKFAEF 727
Query: 325 CF 330
CF
Sbjct: 728 CF 733
Score = 64.8 bits (135), Expect(2) = 7e-029
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +1 / +2
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
+ + + DV D YH YK D+E+M + + +YRFS+SWSRI PKG
Sbjct: 410 VANNATADVTVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKG 544
>dbj|BD224351.1| Materials and methods for the modification of plant lignin content
Length = 463
Score = 126 bits (270), Expect = 1e-028
Identities = 45/103 (43%), Positives = 68/103 (66%)
Frame = +1 / +2
Query: 208 GIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLI 387
G++PFVT+ H+D+P+ L++ Y + + ++ +DF F+E CF+ FGDRVK+WVT NEP +
Sbjct: 119 GVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVKYWVTVNEPLIF 298
Query: 388 XKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHA 516
+Y P CS + +GNS+T YI AHNM+LAH+
Sbjct: 299 SYFSYDVGLHAPGRCSPGFGNCTAGNSATEPYIVAHNMLLAHS 427
>dbj|BD224414.1| Materials and methods for the modification of plant lignin content
Length = 424
Score = 126 bits (270), Expect = 1e-028
Identities = 45/103 (43%), Positives = 68/103 (66%)
Frame = +1 / +2
Query: 208 GIQPFVTINHYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLI 387
G++PFVT+ H+D+P+ L++ Y + + ++ +DF F+E CF+ FGDRVK+WVT NEP +
Sbjct: 80 GVEPFVTLYHWDLPQALEDEYGGFRSKKVVDDFGIFSEECFRAFGDRVKYWVTVNEPLIF 259
Query: 388 XKLAYSXXAFPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHA 516
+Y P CS + +GNS+T YI AHNM+LAH+
Sbjct: 260 SYFSYDVGLHAPGRCSPGFGNCTAGNSATEPYIVAHNMLLAHS 388
>dbj|BD272979.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 469
Score = 83.1 bits (175), Expect(2) = 6e-028
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGR 141
DGSNGDVA D YHRYK+D+++M +G+ +YRFSLSW RI PKG+
Sbjct: 184 DGSNGDVAVDQYHRYKEDVKLMKDMGVDTYRFSLSWPRIFPKGK 315
Score = 60.6 bits (126), Expect(2) = 6e-028
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERYNSWL 282
G +N+ GV +YN+LIN LL+ GIQ VT+ H+D P+ L++ Y +L
Sbjct: 316 GEINEEGVAYYNNLINELLQNGIQASVTLFHWDTPQSLEDEYGGFL 453
>gb|AI812611.1|AI812611 17A5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 525
Score = 72.1 bits (151), Expect(2) = 4e-027
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1 / +1
Query: 4 IDDGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
I DG NG +A D YHRYK D+ ++ +G+ YRFS+SWSRI P G
Sbjct: 253 IADGKNGGIAVDQYHRYKGDVRLLKYMGMNMYRFSISWSRIFPMG 387
Score = 68.9 bits (144), Expect(2) = 4e-027
Identities = 23/44 (52%), Positives = 36/44 (81%)
Frame = +1 / +1
Query: 139 RFGGVNQAGVKFYNSLINGLLEKGIQPFVTINHYDIPEELQERY 270
R GGVN+ G+ +YN+LIN LL+ G++PFVT+ H+D+P+ L++ Y
Sbjct: 394 RQGGVNKEGIAYYNNLINELLKNGVEPFVTLYHWDLPQALEDEY 525
>gb|AW056671.1|AW056671 ST54D07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54D07, mRNA sequence
Length = 432
Score = 119 bits (255), Expect = 1e-026
Identities = 44/86 (51%), Positives = 56/86 (65%)
Frame = +1 / +1
Query: 280 LNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAFPPNXCSEPYXKXXS 459
LN + ED+ FAE CFK FGDRVK+W+TFNEP ++ L Y F P CS P+ +
Sbjct: 10 LNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTA 189
Query: 460 GNSSTXXYIXAHNMILAHAKXXNIYR 537
GNS+T YI AHN++L+HA IYR
Sbjct: 190 GNSATEPYIVAHNLLLSHATAVKIYR 267
>gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 5', mRNA
sequence
Length = 685
Score = 113 bits (241), Expect = 1e-024
Identities = 42/101 (41%), Positives = 58/101 (57%)
Frame = +1 / +3
Query: 235 HYDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXA 414
H+D+P+ L++ Y + + + EDF FAE CF+ FGDRVK+W T NEP Y
Sbjct: 6 HWDMPQALEDEYGGFRSKRVVEDFGVFAEECFRAFGDRVKYWTTINEPLTFSLYGYDLGL 185
Query: 415 FPPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
P CS + +GNS+T YI HNM+LAH+ +YR
Sbjct: 186 HAPGRCSPGFGNCTAGNSATEPYIVTHNMLLAHSAAVKLYR 308
>gb|DR178543.1|DR178543 RTMNUT1_12_A07.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_12_A07_A029 5', mRNA sequence
Length = 701
Score = 111 bits (237), Expect = 4e-024
Identities = 42/100 (42%), Positives = 60/100 (60%)
Frame = +1 / +1
Query: 238 YDIPEELQERYNSWLNLEIQEDFTYFAELCFKXFGDRVKHWVTFNEPNLIXKLAYSXXAF 417
+D+P+ L++ Y + + + EDF+ FAE CF+ FGDRVK+WVT NEP + Y
Sbjct: 1 WDMPQALEDEYGGFRSKRVVEDFSIFAEECFRAFGDRVKYWVTVNEPLVFSVGGYDLGIH 180
Query: 418 PPNXCSEPYXKXXSGNSSTXXYIXAHNMILAHAKXXNIYR 537
P CS + +GNS+T YI HNM+LAH+ +YR
Sbjct: 181 APGRCSAGFGNCTAGNSATEPYIVTHNMLLAHSAVVKLYR 300
>gb|DR019937.1|DR019937 STRS1_33_B04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 5', mRNA sequence
Length = 645
Score = 70.7 bits (148), Expect(3) = 4e-024
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKG 138
D S+ DVA D YHRY++D+E+M +G+ +YRFS+SWSRI P G
Sbjct: 163 DFSDADVADDQYHRYREDMELMVDLGMDAYRFSISWSRIFPNG 291
Score = 44.1 bits (90), Expect(3) = 4e-024
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +1 / +2
Query: 208 GIQPFVTINHYDIPEELQERYNSWLNLEI 294
GI+P+VT+ H+D+P+ L++ Y WL+ +I
Sbjct: 440 GIEPYVTLYHWDLPQALEDAYKGWLSSKI 526
Score = 33.6 bits (67), Expect(3) = 4e-024
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1 / +1
Query: 145 GGVNQAGVKFYNSLINGLLEKGIQ 216
G +NQAG+ YN I+ LLE G++
Sbjct: 295 GDINQAGLDHYNKFIDALLENGMR 366
>gb|DN615181.1|DN615181 EST968231 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSACC81, mRNA sequence
Length = 535
Score = 109 bits (233), Expect = 1e-023
Identities = 40/74 (54%), Positives = 56/74 (75%)
Frame = +1 / -1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS+SWSRI P G VN+ G+ +YN+LI
Sbjct: 223 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLI 44
Query: 190 NGLLEKGIQPFVTI 231
+ LL+KG++P VT+
Sbjct: 43 DTLLQKGVRPSVTL 2
>gb|DT629430.1|DT629430 EST1156000 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD939 5' end, mRNA sequence
Length = 535
Score = 109 bits (233), Expect = 1e-023
Identities = 40/74 (54%), Positives = 56/74 (75%)
Frame = +1 / +1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS+SWSRI P G VN+ G+ +YN+LI
Sbjct: 313 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLI 492
Query: 190 NGLLEKGIQPFVTI 231
+ LL+KG++P VT+
Sbjct: 493 DTLLQKGVRPSVTL 534
>gb|DN611254.1|DN611254 EST964304 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAZ70, mRNA sequence
Length = 534
Score = 108 bits (230), Expect = 4e-023
Identities = 40/74 (54%), Positives = 55/74 (74%)
Frame = +1 / -3
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS SWSRI P G VN+ G+ +YN+LI
Sbjct: 223 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSTSWSRIFPDGFGAEVNKEGIAYYNNLI 44
Query: 190 NGLLEKGIQPFVTI 231
+ LL+KG++P VT+
Sbjct: 43 DTLLQKGVRPSVTL 2
>gb|DN615142.1|DN615142 EST968192 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSACC36, mRNA sequence
Length = 538
Score = 108 bits (230), Expect = 4e-023
Identities = 40/74 (54%), Positives = 55/74 (74%)
Frame = +1 / -1
Query: 10 DGSNGDVAADHYHRYKDDIEMMHSIGLGSYRFSLSWSRILPKGRFGGVNQAGVKFYNSLI 189
DG NGDVA D YHRYK+D++++ +G YRFS SWSRI P G VN+ G+ +YN+LI
Sbjct: 223 DGRNGDVAVDQYHRYKEDVDLIAKMGFNVYRFSTSWSRIFPDGFGAEVNKEGIAYYNNLI 44
Query: 190 NGLLEKGIQPFVTI 231
+ LL+KG++P VT+
Sbjct: 43 DTLLQKGVRPSVTL 2
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 233,832,681
Number of Sequences: 355925
Number of extensions: 2529269
Number of successful extensions: 25908
Number of sequences better than 1.0e-020: 57
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6947016960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)