TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 400 e-110
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 333 1e-090
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 281 1e-088
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 320 7e-087
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 320 7e-087
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 320 7e-087
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 307 7e-083
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 305 4e-082
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 300 1e-080
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 291 5e-078
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 287 6e-077
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 265 4e-070
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 252 3e-066
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 141 1e-053
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 198 7e-050
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 144 1e-049
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 134 2e-049
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 196 2e-049
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 192 3e-048
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 192 3e-048
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 189 2e-047
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 126 8e-043
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 160 2e-038
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 159 4e-038
gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciat... 134 7e-031
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 131 9e-030
gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo li... 107 2e-029
gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Plani... 119 4e-026
gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciat... 118 7e-026
gb|DT637161.1|DT637161 EST1152092 Normalized pine embryo li... 105 4e-022
gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus adde... 70 6e-022
gb|BF221350.1|BF221350 NXCI_157_F07_F NXCI (Nsf Xylem Compr... 67 4e-021
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 400 bits (867), Expect = e-110
Identities = 152/179 (84%), Positives = 159/179 (88%)
Frame = +1 / +2
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP VYPKL LF DIVV DLT W VDL+GKVN CG SFHRFDKYLNFSN
Sbjct: 329 FYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGESFHRFDKYLNFSN 508
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
PHIAR+FDPNACGWAYGMN+FDL+EWKK+DITGIYHKWQNMNEDRVLWKLGTLPPGL+TF
Sbjct: 509 PHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITF 688
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIK 537
Y LTHPLDKSWHVLGLGYNPS+DR EIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIK
Sbjct: 689 YGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIK 865
Score = 232 bits (500), Expect = 4e-060
Identities = 112/177 (63%), Positives = 117/177 (66%)
Frame = -2 / -3
Query: 533 IYLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KV 354
IY VQ G Y VIASS+ GFMFPL**TTAALSIS+RS LGLYP P TC DLS G V * V
Sbjct: 861 IYFVQ*GLYFVIASSNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NV 682
Query: 353 KRPGGSVPSFQRTLSSFIFCHLW*IPVISFFFHSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
PGGSVPSF TLSSF+FCHL IPVIS FFHSLRS FIP AQP A GSK AMCG E
Sbjct: 681 INPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQALGSKCLAMCGLE 502
Query: 173 XXXXXXXXXXXXPQXXXXXLTFPLRSTSHXXVKSXXTTMSXXXKXXXSNFG*TXGR* 3
PQ LTFP RST H VKS TT+S K S+ G*T GR*
Sbjct: 501 KLRYLSNR*KLSPQVSTAPLTFP*RSTDHKGVKSFCTTISSSKKRILSSLG*TCGR* 331
Score = 174 bits (374), Expect = 1e-042
Identities = 80/178 (44%), Positives = 108/178 (60%)
Frame = +3 / +1
Query: 3 LSPXGLSKVGXXXLPXX*HSCXXXFNXXVGC*S*WKGQXXXXXLWXEFSPF*QIS*FFKS 182
LS LS+ G *+ F+ V S WKG LW + SP *QIS*FF+S
Sbjct: 331 LSSTSLSQTGQDPFLG**YCGAERFDALVVSRSSWKG*WCSGNLWRKLSPV*QIS*FFQS 510
Query: 183 THCSEL*SKCMWLGLWDEHL*SEGVEEERYYWDLPQMAKYE*RQGPLEAWDTSAWPLDLL 362
H *S C+WLG+WDE +*S+ +EE RY W++ Q+A++E* +EAW+T+ W +L
Sbjct: 511 AHSQAF*S*CLWLGIWDECI*SQRMEETRYNWNISQVAEHE*G*SVVEAWNTTPWIDHVL 690
Query: 363 *VDAPTGQVMACSWIRIQPKH*PFRDRQCCCGSLQWEHEAMAGASNDQVPTILDQVYQ 536
+D GQV+AC+ RI PFRD QC C SLQWEHE + A ND+V +LD++Y+
Sbjct: 691 WLDPSFGQVLACAGFRI*S*RGPFRD*QCSCCSLQWEHETLVRAGNDEVQALLDKIYK 864
Score = 137 bits (293), Expect = 1e-031
Identities = 76/177 (42%), Positives = 87/177 (49%)
Frame = -3 / -1
Query: 532 YTWSNMVGTWSLLAPAMASCSHCNEPQQHCLSLNGQCLGCILIQEHAMTCPVGASTYRRS 353
Y S+ T SL A SCSHCNE Q HC SLNG IL HA TCP S+++
Sbjct: 860 YILSSKACTSSLPALTKVSCSHCNEQQLHCQSLNGPR*DYILNPAHAKTCPKDGSSHKT* 681
Query: 352 RGQAEVSQASKGPCLHSYFAICGRSQ*YLSSSTPSDQRCSSHKPSHMHLDQSSEQCVDLK 173
Q V QAS HS A C Q YL SS DQ SSH P+H H DQ++ C D K
Sbjct: 680 SIQGVVFQASTTLYPHSCSATCDIFQLYLVSSIL*DQIHSSHMPNHKH*DQNAWLCADWK 501
Query: 172 N*DICQNGENSXHRXXXXH*PFH*DQHPTXLLNXXXQLCXXXGRXXXPTLDRPXGDR 2
N*DICQ GE+ H+ H*PFH D T N + P D+ DR
Sbjct: 500 N*DICQTGESFLHKFPLHH*PFHEDLLTTRASNLSAPQYHHPRKGSCPVWDKLVEDR 330
Score = 122 bits (260), Expect = 5e-027
Identities = 57/113 (50%), Positives = 76/113 (67%)
Frame = -1 / -2
Query: 531 ILGPIWSVLGHC*LQPWLHVPIVMNHSSIVYL*TVNAWVVS*SKNMP*LVQWVRQLIEGQ 352
I P+ VL HC L P HVPIVMN+S IV L*TV+A ++S*+++MP LVQ + Q I+
Sbjct: 859 IFCPVRPVLRHCQL*PRFHVPIVMNNSCIVNL*TVHARIIS*TQHMPRLVQRMGQAIKRD 680
Query: 351 EARRKCPKLPKDPVFIHILPFVVDPSNIFLLPLPQIKDVHPISPATCIWIKVP 193
++R C KLP+ + IH+LP V+ S I LP +IK +HPI P T I IK+P
Sbjct: 679 QSRG*CSKLPQHSILIHVLPLVIYSSYILFLPFFEIKYIHPICPTTSIRIKMP 521
Score = 77.6 bits (163), Expect(2) = 2e-021
Identities = 51/115 (44%), Positives = 58/115 (50%)
Frame = +2 / +3
Query: 2 SISXXSIQSWXXXSSXXXT*LXXXI*QXCGMLILMERSMXXXXPVXXVFTVLTNILIFQI 181
SI I +W S I*+ CG I MER M V FT LTNILIF I
Sbjct: 330 SIFHKFIPNWTRSFSWMMILWCRKI*RPCGQ*IFMERLMVQWKLVEKAFTGLTNILIFPI 509
Query: 182 HTLLGTLIQMHVAGLMG*TSLI*GSGRRKILLGSTTNGKI*MKTGSFGSLGHFRL 346
T G LI M V G MG* LI +GR KI L T+G+ *M+ GSL H+ L
Sbjct: 510 RT*PGILILMLVVGHMG*MYLISKNGRNKI*LEYITSGRT*MRIECCGSLEHYPL 674
Score = 45.1 bits (92), Expect(2) = 2e-021
Identities = 29/51 (56%), Positives = 31/51 (60%)
Frame = +2 / +3
Query: 380 WTSHGMFLD*DTTQALTVQR*TMLLWFITMGT*SHGWS*Q*PSTDHIGPSI 532
WTS GM *D A TV R TM L FITMGT*+ G S Q* ST G +I
Sbjct: 708 WTSLGMCWV*DIILAWTV*RLTMQLLFITMGT*NLG*SWQ*RSTGLTGQNI 860
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 333 bits (722), Expect = 1e-090
Identities = 121/136 (88%), Positives = 133/136 (97%)
Frame = +1 / -3
Query: 175 SNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLL 354
SNPHIAR+FDPNACGWAYGMN+FDL+EWKK+DITGIYHKWQNMNEDRVLWKLGTLPPGL+
Sbjct: 795 SNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLI 616
Query: 355 TFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 534
TFY LTHPLDKSWHVLGLGYNPS+DR EIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI
Sbjct: 615 TFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 436
Query: 535 KYDHPYIRGCNLSE*I 582
KYDHP+++ CN++E*+
Sbjct: 435 KYDHPFLQQCNINE*L 388
Score = 204 bits (440), Expect = 8e-052
Identities = 96/135 (71%), Positives = 99/135 (73%)
Frame = -2 / +2
Query: 578 YSLKLHPRM*G*SYLIYLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPR 399
YS LH G*SY IY VQ G Y VIASS+ GFMFPL**TTAALSIS+RS LGLYP P
Sbjct: 392 YSFILHCCKKG*SYFIYFVQ*GLYFVIASSNQGFMFPL**TTAALSISKRSTLGLYPKPS 571
Query: 398 TCHDLSSGCVNL*KVKRPGGSVPSFQRTLSSFIFCHLW*IPVISFFFHSLRSKMFIP*AQ 219
TC DLS G V * V PGGSVPSF TLSSF+FCHL IPVIS FFHSLRS FIP AQ
Sbjct: 572 TCQDLSKGWVKP*NVINPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQ 751
Query: 218 PHAFGSKFRAMCGFE 174
P A GSK AMCG E
Sbjct: 752 PQALGSKCLAMCGLE 796
Score = 148 bits (317), Expect = 7e-035
Identities = 62/135 (45%), Positives = 90/135 (66%)
Frame = +3 / -2
Query: 174 FKSTHCSEL*SKCMWLGLWDEHL*SEGVEEERYYWDLPQMAKYE*RQGPLEAWDTSAWPL 353
F+S H *S C+WLG+WDE +*S+ +EE RY W++ Q+A++E* +EAW+T+ W
Sbjct: 796 FQSAHSQAF*S*CLWLGIWDECI*SQRMEETRYNWNISQVAEHE*G*SVVEAWNTTPWID 617
Query: 354 DLL*VDAPTGQVMACSWIRIQPKH*PFRDRQCCCGSLQWEHEAMAGASNDQVPTILDQVY 533
+L +D GQV+AC+ RI PFRD QC C SLQWEHE + A ND+V +LD++Y
Sbjct: 616 HVLWLDPSFGQVLACAGFRI*S*RGPFRD*QCSCCSLQWEHETLVRAGNDEVQALLDKIY 437
Query: 534 QV*SPLHPWMQLE*V 578
++*S +Q +*+
Sbjct: 436 KI*SSFLTAVQYK*I 392
Score = 127 bits (271), Expect = 2e-028
Identities = 60/119 (50%), Positives = 80/119 (67%)
Frame = -1 / +1
Query: 549 RVIILDILGPIWSVLGHC*LQPWLHVPIVMNHSSIVYL*TVNAWVVS*SKNMP*LVQWVR 370
R+II I P+ VL HC L P HVPIVMN+S IV L*TV+A ++S*+++MP LVQ +
Sbjct: 421 RMIIFYIFCPVRPVLRHCQL*PRFHVPIVMNNSCIVNL*TVHARIIS*TQHMPRLVQRMG 600
Query: 369 QLIEGQEARRKCPKLPKDPVFIHILPFVVDPSNIFLLPLPQIKDVHPISPATCIWIKVP 193
Q I+ ++R C KLP+ + IH+LP V+ S I LP +IK +HPI P T I IK+P
Sbjct: 601 QAIKRDQSRG*CSKLPQHSILIHVLPLVIYSSYILFLPFFEIKYIHPICPTTSIRIKMP 777
Score = 106 bits (227), Expect = 2e-022
Identities = 60/134 (44%), Positives = 67/134 (50%)
Frame = -3 / +3
Query: 574 HSSCIHGCKGDHT*YTWSNMVGTWSLLAPAMASCSHCNEPQQHCLSLNGQCLGCILIQEH 395
H C K DH Y S+ T SL A SCSHCNE Q HC SLNG IL H
Sbjct: 396 HLYCTAVRKDDHILYILSSKACTSSLPALTKVSCSHCNEQQLHCQSLNGPR*DYILNPAH 575
Query: 394 AMTCPVGASTYRRSRGQAEVSQASKGPCLHSYFAICGRSQ*YLSSSTPSDQRCSSHKPSH 215
A TCP S+++ Q V QAS HS A C Q YL SS DQ SSH P+H
Sbjct: 576 AKTCPKDGSSHKT*SIQGVVFQASTTLYPHSCSATCDIFQLYLVSSIL*DQIHSSHMPNH 755
Query: 214 MHLDQSSEQCVDLK 173
H DQ++ C D K
Sbjct: 756 KH*DQNAWLCADWK 797
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 281 bits (608), Expect(2) = 1e-088
Identities = 107/135 (79%), Positives = 113/135 (83%)
Frame = +1 / +1
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP VYPKL LF DIVV DLT W VDL+GKVN CG SFHRFDKYLNFSN
Sbjct: 337 FYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGESFHRFDKYLNFSN 516
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
PHIAR+FDPNACGWAYGMN+FDL+EWKK+DITGIYHKWQNMNEDRVLWKLGTLPPGL+TF
Sbjct: 517 PHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLITF 696
Query: 361 YKLTHPLDKSWHVLG 405
Y LTHPLDKSW G
Sbjct: 697 YGLTHPLDKSWACAG 741
Score = 156 bits (335), Expect(2) = 3e-047
Identities = 77/135 (57%), Positives = 80/135 (59%)
Frame = -2 / -1
Query: 407 NPRTCHDLSSGCVNL*KVKRPGGSVPSFQRTLSSFIFCHLW*IPVISFFFHSLRSKMFIP 228
NP DLS G V * V PGGSVPSF TLSSF+FCHL IPVIS FFHSLRS FIP
Sbjct: 743 NPAHAQDLSKGWVKP*NVINPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIP 564
Query: 227 *AQPHAFGSKFRAMCGFEXXXXXXXXXXXXPQXXXXXLTFPLRSTSHXXVKSXXTTMSXX 48
AQP A GSK AMCG E PQ LTFP RST H VKS TT+S
Sbjct: 563 YAQPQALGSKCLAMCGLEKLRYLSNR*KLSPQVSTAPLTFP*RSTDHKGVKSFCTTISSS 384
Query: 47 XKXXXSNFG*TXGR* 3
K S+ G*T GR*
Sbjct: 383 KKRILSSLG*TCGR* 339
Score = 118 bits (252), Expect(2) = 1e-028
Identities = 56/135 (41%), Positives = 78/135 (57%)
Frame = +3 / +3
Query: 3 LSPXGLSKVGXXXLPXX*HSCXXXFNXXVGC*S*WKGQXXXXXLWXEFSPF*QIS*FFKS 182
LS LS+ G *+ F+ V S WKG LW + SP *QIS*FF+S
Sbjct: 339 LSSTSLSQTGQDPFLG**YCGAERFDALVVSRSSWKG*WCSGNLWRKLSPV*QIS*FFQS 518
Query: 183 THCSEL*SKCMWLGLWDEHL*SEGVEEERYYWDLPQMAKYE*RQGPLEAWDTSAWPLDLL 362
H *S C+WLG+WDE +*S+ +EE RY W++ Q+A++E* +EAW+T+ W +L
Sbjct: 519 AHSQAF*S*CLWLGIWDECI*SQRMEETRYNWNISQVAEHE*G*SVVEAWNTTPWIDHVL 698
Query: 363 *VDAPTGQVMACSWI 407
+D GQV+ W+
Sbjct: 699 WLDPSFGQVLGMCWV 743
Score = 93.2 bits (197), Expect(2) = 1e-024
Identities = 53/134 (39%), Positives = 63/134 (47%)
Frame = -3 / -2
Query: 403 QEHAMTCPVGASTYRRSRGQAEVSQASKGPCLHSYFAICGRSQ*YLSSSTPSDQRCSSHK 224
Q TCP S+++ Q V QAS HS A C Q YL SS DQ SSH
Sbjct: 739 QHMPKTCPKDGSSHKT*SIQGVVFQASTTLYPHSCSATCDIFQLYLVSSIL*DQIHSSHM 560
Query: 223 PSHMHLDQSSEQCVDLKN*DICQNGENSXHRXXXXH*PFH*DQHPTXLLNXXXQLCXXXG 44
P+H H DQ++ C D KN*DICQ GE+ H+ H*PFH D T N
Sbjct: 559 PNHKH*DQNAWLCADWKN*DICQTGESFLHKFPLHH*PFHEDLLTTRASNLSAPQYHHPR 380
Query: 43 RXXXPTLDRPXGDR 2
+ P D+ DR
Sbjct: 379 KGSCPVWDKLVEDR 338
Score = 66.1 bits (138), Expect(2) = 1e-088
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1 / +2
Query: 394 HVLGLGYNPSIDRSEIDNAAVVHYNGN 474
HVLGLGYNPS+DR EIDNAAVVHYNGN
Sbjct: 731 HVLGLGYNPSVDRLEIDNAAVVHYNGN 811
Score = 53.3 bits (110), Expect(2) = 3e-047
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2 / -3
Query: 473 FPL**TTAALSISERSMLGLYPNPRTC 393
FPL**TTAALSIS+RS LGLYP P TC
Sbjct: 810 FPL**TTAALSISKRSTLGLYPKPSTC 730
Score = 40.5 bits (82), Expect(2) = 1e-024
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = -1 / -2
Query: 474 VPIVMNHSSIVYL*TVNAWVVS*SKNMP 391
VPIVMN+S IV L*TV+A ++S*+++MP
Sbjct: 811 VPIVMNNSCIVNL*TVHARIIS*TQHMP 728
Score = 28.6 bits (56), Expect(2) = 1e-028
Identities = 17/28 (60%), Positives = 17/28 (60%)
Frame = +2 / +3
Query: 392 GMFLD*DTTQALTVQR*TMLLWFITMGT 475
GM *D A TV R TM L FITMGT
Sbjct: 729 GMCWV*DIILAWTV*RLTMQLLFITMGT 812
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 320 bits (694), Expect = 7e-087
Identities = 118/193 (61%), Positives = 142/193 (73%)
Frame = +1 / +3
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP +YPKL LF D+VV DLT W++D+ GKVN C SFHR+DKY+NFS+
Sbjct: 63 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSH 242
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+R LWKLGTLPPGL+T+
Sbjct: 243 PLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 422
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKY 540
YK T PLDKSWHVLGLGYNPSI EI NAAVVH+NGNMKPWL++ M +YR WTKY+ Y
Sbjct: 423 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 602
Query: 541 DHPYIRGCNLSE* 579
D +++ CN *
Sbjct: 603 DMEFVQMCNFGH* 641
Score = 108 bits (230), Expect(3) = 1e-029
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / -1
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 592 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VI 413
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 412 RPGGNVPSFHNVRFSFRFC 356
Score = 32.2 bits (64), Expect(3) = 1e-029
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2 / -1
Query: 116 LTFPLRSTSHXXVKSXXTTMSXXXKXXXSNFG*TXGR* 3
LTFP S SH V+S TT S NFG G+*
Sbjct: 178 LTFPSISISHNPVRSF*TTTSSSRNKIRCNFGYISGK* 65
Score = 28.1 bits (55), Expect(3) = 1e-029
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / -1
Query: 257 HSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
H+ + K FIP*AQP A G + G E
Sbjct: 319 HASKWKKFIP*AQPQALGLNLALIRG*E 236
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 320 bits (694), Expect = 7e-087
Identities = 118/193 (61%), Positives = 142/193 (73%)
Frame = +1 / +2
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP +YPKL LF D+VV DLT W++D+ GKVN C SFHR+DKY+NFS+
Sbjct: 47 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSH 226
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+R LWKLGTLPPGL+T+
Sbjct: 227 PLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 406
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKY 540
YK T PLDKSWHVLGLGYNPSI EI NAAVVH+NGNMKPWL++ M +YR WTKY+ Y
Sbjct: 407 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 586
Query: 541 DHPYIRGCNLSE* 579
D +++ CN *
Sbjct: 587 DMEFVQMCNFGH* 625
Score = 108 bits (230), Expect(3) = 1e-029
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / -3
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 576 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VI 397
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 396 RPGGNVPSFHNVRFSFRFC 340
Score = 32.2 bits (64), Expect(3) = 1e-029
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2 / -3
Query: 116 LTFPLRSTSHXXVKSXXTTMSXXXKXXXSNFG*TXGR* 3
LTFP S SH V+S TT S NFG G+*
Sbjct: 162 LTFPSISISHNPVRSF*TTTSSSRNKIRCNFGYISGK* 49
Score = 28.1 bits (55), Expect(3) = 1e-029
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / -3
Query: 257 HSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
H+ + K FIP*AQP A G + G E
Sbjct: 303 HASKWKKFIP*AQPQALGLNLALIRG*E 220
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 320 bits (694), Expect = 7e-087
Identities = 118/193 (61%), Positives = 142/193 (73%)
Frame = +1 / +1
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP +YPKL LF D+VV DLT W++D+ GKVN C SFHR+DKY+NFS+
Sbjct: 55 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSH 234
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+R LWKLGTLPPGL+T+
Sbjct: 235 PLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 414
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKY 540
YK T PLDKSWHVLGLGYNPSI EI NAAVVH+NGNMKPWL++ M +YR WTKY+ Y
Sbjct: 415 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 594
Query: 541 DHPYIRGCNLSE* 579
D +++ CN *
Sbjct: 595 DMEFVQMCNFGH* 633
Score = 108 bits (230), Expect(3) = 1e-029
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / -2
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 584 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VI 405
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 404 RPGGNVPSFHNVRFSFRFC 348
Score = 32.2 bits (64), Expect(3) = 1e-029
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2 / -2
Query: 116 LTFPLRSTSHXXVKSXXTTMSXXXKXXXSNFG*TXGR* 3
LTFP S SH V+S TT S NFG G+*
Sbjct: 170 LTFPSISISHNPVRSF*TTTSSSRNKIRCNFGYISGK* 57
Score = 28.1 bits (55), Expect(3) = 1e-029
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / -2
Query: 257 HSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
H+ + K FIP*AQP A G + G E
Sbjct: 311 HASKWKKFIP*AQPQALGLNLALIRG*E 228
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 307 bits (665), Expect = 7e-083
Identities = 112/148 (75%), Positives = 129/148 (87%)
Frame = +1 / +2
Query: 133 CGXSFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNED 312
CG SFHRFDKYLNFSN IA+NFDPNACGWAYGMNIFDL EW+K+ ITGIYH+WQN+N+D
Sbjct: 14 CGESFHRFDKYLNFSNVLIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKD 193
Query: 313 RVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLE 492
R LWKLGTLPPGL+TFY LT LDKSWHVLGLGYNP++D +EI+ AAV+HYNGNMKPWL+
Sbjct: 194 RQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLD 373
Query: 493 LAMTKYRPYWTKYIKYDHPYIRGCNLSE 576
+A+ KYR YWTKY+KYD CN+SE
Sbjct: 374 IAIPKYRHYWTKYVKYDXXXXXLCNISE 457
Score = 161 bits (346), Expect = 7e-039
Identities = 82/134 (61%), Positives = 86/134 (64%)
Frame = -2 / -1
Query: 575 SLKLHPRM*G*SYLIYLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRT 396
SL LH *SY YLVQ YL +A SSHGF+ PL* TAALSIS S LGL P PRT
Sbjct: 456 SLILHSXXXX*SYFTYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRT 277
Query: 395 CHDLSSGCVNL*KVKRPGGSVPSFQRTLSSFIFCHLW*IPVISFFFHSLRSKMFIP*AQP 216
C DLS V *KV PGG VP+F LS F FCH W*IPVI F HS RS +FIP A P
Sbjct: 276 CQDLSKTNVR**KVISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIFIPYAHP 97
Query: 215 HAFGSKFRAMCGFE 174
AFGSKF AM E
Sbjct: 96 QAFGSKFFAMSTLE 55
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 305 bits (660), Expect = 4e-082
Identities = 109/190 (57%), Positives = 141/190 (74%)
Frame = +1 / -1
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FY+P VYP L +F D+VV DLT + +DL+G VN C +FHR+ KYLNFS+
Sbjct: 756 FYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSH 577
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I +FD +ACGWA+GMN+FDL WKK ++T YH WQ N DR LWKLGTLPPGLLTF
Sbjct: 576 PMIRSHFDADACGWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTF 397
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKY 540
Y LT PLD+ WH+LGLGY+P++D I++ AV+HYNGNMKPWL+LAM +Y+ +W KY+ Y
Sbjct: 396 YGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNY 217
Query: 541 DHPYIRGCNL 570
HP+++ CN+
Sbjct: 216 LHPFLQKCNI 187
Score = 122 bits (262), Expect(2) = 4e-031
Identities = 55/130 (42%), Positives = 79/130 (60%)
Frame = -1 / +1
Query: 576 LTQVASTDVRVIILDILGPIWSVLGHC*LQPWLHVPIVMNHSSIVYL*TVNAWVVS*SKN 397
L VA + ++ IL P V HC QPW HVPI+M +SS Y V+ W+++*
Sbjct: 181 LMDVALLQKWMQVIHILFPKRFVPVHCQFQPWFHVPIIMQNSSTFYQLHVHIWIIT*P*Y 360
Query: 396 MP*LVQWVRQLIEGQEARRKCPKLPKDPVFIHILPFVVDPSNIFLLPLPQIKDVHPISPA 217
MP ++W+ + IEG++A R+ PK PK P+ I +LP V+ NI LLP ++K +HP P+
Sbjct: 361 MPTTIKWLSEAIEGKQAWRQSPKFPKCPINILLLPIVISACNIELLPCNKVKHIHPKGPS 540
Query: 216 TCIWIKVPSN 187
T I IKV +N
Sbjct: 541 TRICIKVRTN 570
Score = 92.3 bits (195), Expect(2) = 8e-024
Identities = 45/79 (56%), Positives = 49/79 (62%)
Frame = -2 / +2
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
Y Q YL IAS +HGFMFPL* TA LSIS S G P+P C SSG V *KV
Sbjct: 227 YFSQKDLYLFIASFNHGFMFPL*CKTAPLSISCMSTFGS*PSPSICQRRSSGSVRP*KVS 406
Query: 350 RPGGSVPSFQRTLSSFIFC 294
+PGG VPSFQ LS+F C
Sbjct: 407 KPGGKVPSFQSVLSTFCSC 463
Score = 38.6 bits (78), Expect(2) = 8e-024
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2 / +2
Query: 263 FFHSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
FFH+ RS FIP A PHA SK + G+E
Sbjct: 494 FFHATRSNTFIPKAHPHASASK*ERIMGWE 583
Score = 32.7 bits (65), Expect(2) = 4e-031
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -2 / +2
Query: 134 QXXXXXLTFPLRSTSHXXVKSXXTTMSXXXKXXXSNFG*TXG 9
Q LTFP +S VKS TT S K S G T G
Sbjct: 623 QVSTAPLTFPCKSIEKSGVKSF*TTTSSSRKTTFSRAGYTSG 748
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 300 bits (649), Expect = 1e-080
Identities = 108/137 (78%), Positives = 124/137 (90%)
Frame = +1 / +2
Query: 133 CGXSFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNED 312
CG SFHRFDKYLNFSN IA+NFDPNACGWAYGMNIFDL EW+K+ ITGIYH+WQN+N+D
Sbjct: 14 CGESFHRFDKYLNFSNVLIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKD 193
Query: 313 RVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLE 492
R LWKLGTLPPGL+TFY LT LDKSWHVLGLGYNP++D +EI+ AAV+HYNGNMKPWL+
Sbjct: 194 RQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLD 373
Query: 493 LAMTKYRPYWTKYIKYD 543
+A+ KYR YWTKY+KYD
Sbjct: 374 IAIPKYRHYWTKYVKYD 424
Score = 161 bits (346), Expect = 7e-039
Identities = 82/134 (61%), Positives = 86/134 (64%)
Frame = -2 / -1
Query: 575 SLKLHPRM*G*SYLIYLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRT 396
SL LH *SY YLVQ YL +A SSHGF+ PL* TAALSIS S LGL P PRT
Sbjct: 456 SLILHSXXXX*SYFTYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRT 277
Query: 395 CHDLSSGCVNL*KVKRPGGSVPSFQRTLSSFIFCHLW*IPVISFFFHSLRSKMFIP*AQP 216
C DLS V *KV PGG VP+F LS F FCH W*IPVI F HS RS +FIP A P
Sbjct: 276 CQDLSKTNVR**KVISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIFIPYAHP 97
Query: 215 HAFGSKFRAMCGFE 174
AFGSKF AM E
Sbjct: 96 QAFGSKFFAMSTLE 55
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 291 bits (630), Expect = 5e-078
Identities = 105/188 (55%), Positives = 134/188 (71%)
Frame = +1 / +2
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FY+P +YP L +F D+VV DLT + +DL+G VN C +FHR+ KYLNFS+
Sbjct: 71 FYIPEIYPALDKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSH 250
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I +FDP ACGWA+GMN+FDL WK ++T YH WQ N DR LWKLGTLPPGLL+F
Sbjct: 251 PKIHSHFDPEACGWAFGMNVFDLVAWKNANVTSRYHYWQEQNVDRTLWKLGTLPPGLLSF 430
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKY 540
Y LT PLD+ WHVLGLGY+ +ID I++ AV+H+NGNMKPWL+LAM +Y+ W Y+ Y
Sbjct: 431 YGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVIHFNGNMKPWLKLAMKRYKAIWEMYVNY 610
Query: 541 DHPYIRGC 564
HP ++ C
Sbjct: 611 SHPLLQQC 634
Score = 78.5 bits (165), Expect(2) = 2e-023
Identities = 39/79 (49%), Positives = 44/79 (55%)
Frame = -2 / -2
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
Y+ YL IAS + GF+ PL TA LSIS SM P P TCH SSG V *
Sbjct: 600 YISHIALYLFIASFNQGFILPLKCITAPLSISCSSMFRS*PKPNTCHRRSSGSVRP*NES 421
Query: 350 RPGGSVPSFQRTLSSFIFC 294
PGG+VPSFQ S+F C
Sbjct: 420 NPGGNVPSFQSVRSTFCSC 364
Score = 51.0 bits (105), Expect(2) = 2e-023
Identities = 30/85 (35%), Positives = 34/85 (40%)
Frame = -2 / -2
Query: 263 FFHSLRSKMFIP*AQPHAFGSKFRAMCGFEXXXXXXXXXXXXPQXXXXXLTFPLRSTSHX 84
FFH+ RS FIP A P A GSK + G E Q TFP +S
Sbjct: 333 FFHATRSNTFIPKAHPQASGSK*EWILG*EKLRYLWYRWNVSRQVSTAPFTFPCKSIEKS 154
Query: 83 XVKSXXTTMSXXXKXXXSNFG*TXG 9
VKS TT S S+ G G
Sbjct: 153 GVKSF*TTTSSSRNTTLSSAGYISG 79
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 287 bits (622), Expect = 6e-077
Identities = 104/168 (61%), Positives = 126/168 (75%)
Frame = +1 / +2
Query: 76 LTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLRE 255
LT W++D+ GKVN C SFHR+DKY+NFS+P I F+P ACGWAYGMN F L
Sbjct: 2 LTGLWEIDMKGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDA 181
Query: 256 WKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRS 435
W+++ T YH WQN+NE+R LWKLGTLPPGL+T+YK T PLDKSWHVLGLGYNPSI
Sbjct: 182 WRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMD 361
Query: 436 EIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGCNLSE* 579
EI NAAVVH+NGNMKPWL++ M +YR WTKY+ YD +++ CN *
Sbjct: 362 EIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH* 505
Score = 108 bits (230), Expect(2) = 2e-025
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / -3
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 456 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VI 277
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 276 RPGGNVPSFHNVRFSFRFC 220
Score = 28.1 bits (55), Expect(2) = 2e-025
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / -3
Query: 257 HSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
H+ + K FIP*AQP A G + G E
Sbjct: 183 HASKWKKFIP*AQPQALGLNLALIRG*E 100
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 265 bits (573), Expect = 4e-070
Identities = 96/149 (64%), Positives = 115/149 (77%)
Frame = +1 / +3
Query: 133 CGXSFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNED 312
C SFHR+DKY+NFS+P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+
Sbjct: 6 CFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNEN 185
Query: 313 RVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLE 492
R LWKLGTLPPGL+T+YK T PLDKSWHVLGLGYNPSI EI NAAVVH+NGNMKPWL+
Sbjct: 186 RTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLD 365
Query: 493 LAMTKYRPYWTKYIKYDHPYIRGCNLSE* 579
+ M +YR WTKY+ YD +++ CN *
Sbjct: 366 IGMNQYRDTWTKYVDYDMEFVQMCNFGH* 452
Score = 108 bits (230), Expect(2) = 2e-025
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / -2
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 403 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VI 224
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 223 RPGGNVPSFHNVRFSFRFC 167
Score = 28.1 bits (55), Expect(2) = 2e-025
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / -2
Query: 257 HSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
H+ + K FIP*AQP A G + G E
Sbjct: 130 HASKWKKFIP*AQPQALGLNLALIRG*E 47
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 252 bits (545), Expect = 3e-066
Identities = 91/142 (64%), Positives = 110/142 (77%)
Frame = +1 / +2
Query: 154 FDKYLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLG 333
+DKY+NFS+P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+R LWKLG
Sbjct: 2 YDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLG 181
Query: 334 TLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYR 513
TLPPGL+T+YK T PLDKSWHVLGLGYNPSI EI NAAVVH+NGNMKPWL++ M +YR
Sbjct: 182 TLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYR 361
Query: 514 PYWTKYIKYDHPYIRGCNLSE* 579
WTKY+ YD +++ CN *
Sbjct: 362 DTWTKYVDYDMEFVQMCNFGH* 427
Score = 108 bits (230), Expect(2) = 2e-025
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / -1
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 378 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VI 199
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 198 RPGGNVPSFHNVRFSFRFC 142
Score = 28.1 bits (55), Expect(2) = 2e-025
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2 / -1
Query: 257 HSLRSKMFIP*AQPHAFGSKFRAMCGFE 174
H+ + K FIP*AQP A G + G E
Sbjct: 105 HASKWKKFIP*AQPQALGLNLALIRG*E 22
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 141 bits (302), Expect(2) = 1e-053
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +1 / +2
Query: 217 GWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWH 396
GWA+GMN+FDL WKK ++T YH WQ N DR LWKLGTLPPGLLTFY LT PLD+ WH
Sbjct: 452 GWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWH 631
Query: 397 VLGLGYNPSID 429
+LGLGY+P++D
Sbjct: 632 ILGLGYDPNVD 664
Score = 90.0 bits (190), Expect(2) = 1e-053
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = +1 / +1
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FY+P VYP L +F D+VV DLT + +DL+G VN C +FHR+ KYLNFS+
Sbjct: 235 FYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSH 414
Query: 181 PHIARNFDPNAC 216
P I +FD +AC
Sbjct: 415 PMIRSHFDADAC 450
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 198 bits (426), Expect = 7e-050
Identities = 72/122 (59%), Positives = 88/122 (72%)
Frame = +1 / +3
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP +YPKL LF D+VV DLT W++D+ GKVN C SFHR+DKY+NFS+
Sbjct: 435 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSH 614
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+R LWKLGTLPPGL+T+
Sbjct: 615 PLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 794
Query: 361 YK 366
YK
Sbjct: 795 YK 800
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 144 bits (308), Expect(2) = 1e-049
Identities = 48/94 (51%), Positives = 67/94 (71%)
Frame = +1 / -2
Query: 295 QNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGN 474
+N+N + LW+LGTLPP L+ F HP+D SWH+LGLGY P D + + AAV+HYNG
Sbjct: 631 ENLNSNLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQPETDLNNVRKAAVIHYNGQ 452
Query: 475 MKPWLELAMTKYRPYWTKYIKYDHPYIRGCNLSE 576
KPWL++A + RP+WTKYI Y + +I+ C++ E
Sbjct: 451 AKPWLDIAFPELRPFWTKYINYSNEFIKNCHILE 350
Score = 73.5 bits (154), Expect(2) = 1e-049
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1 / -2
Query: 169 NFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMN 306
NFS+P I+++F+P C WAYGMNIFDL+ W+K +I YH W N
Sbjct: 763 NFSHPLISKSFNPEQCAWAYGMNIFDLQAWRKTNIRETYHYWLKEN 626
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 134 bits (287), Expect(2) = 2e-049
Identities = 44/92 (47%), Positives = 64/92 (69%)
Frame = +1 / +3
Query: 295 QNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGN 474
+N+N + LW++GTLPP L+ F L HP+D SWH+LGLGY P + + +AAV+HYNG
Sbjct: 222 KNLNSNLRLWRMGTLPPALIAFNGLVHPIDPSWHMLGLGYQPRTNLDSVQSAAVIHYNGR 401
Query: 475 MKPWLELAMTKYRPYWTKYIKYDHPYIRGCNL 570
KPWL++A + RP W KY+ + +I+ CN+
Sbjct: 402 AKPWLDIAFHELRPLWAKYVDFSDEFIKRCNI 497
Score = 82.6 bits (174), Expect(2) = 2e-049
Identities = 29/52 (55%), Positives = 34/52 (65%)
Frame = +1 / +3
Query: 151 RFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMN 306
RF Y NFS+P IA NFDP C WAYGMNI DL+ W++ +I YH W N
Sbjct: 72 RFKNYFNFSHPLIANNFDPEQCAWAYGMNILDLQAWRRTNIKETYHYWLKKN 227
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 196 bits (422), Expect = 2e-049
Identities = 72/107 (67%), Positives = 82/107 (76%)
Frame = +1 / +1
Query: 223 AYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVL 402
AYGMN F L W+++ T YH WQN+NE+R LWKLGTLPPGL+T+YK T PLDKSWHVL
Sbjct: 1 AYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVL 180
Query: 403 GLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYD 543
GLGYNPSI EI NA V H+NGNMKPWL+ M +YR WTKY YD
Sbjct: 181 GLGYNPSISMDEIRNAXVXHFNGNMKPWLDXXMNQYRDTWTKYXXYD 321
Score = 104 bits (222), Expect = 9e-022
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = -2 / -1
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL * T AL IS +LGLYP PRTC DLS G V L* V
Sbjct: 308 YLVQVSRY*FMXISSHGFIFPLK*XTXALRISSILILGLYPRPRTCQDLSRGFVVL**VI 129
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 128 RPGGNVPSFHNVRFSFRFC 72
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 192 bits (414), Expect = 3e-048
Identities = 65/105 (61%), Positives = 84/105 (80%)
Frame = +1 / -3
Query: 256 WKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRS 435
WKK ++T YH WQ N DR LWKLGTLPPGLLTFY LT PLD+ WH+LGLGY+P++D
Sbjct: 811 WKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQ 632
Query: 436 EIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGCNL 570
I++ AV+HYNGNMKPWL+LAM +Y+ +W KY+ Y HP+++ CN+
Sbjct: 631 LIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNI 497
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 192 bits (414), Expect = 3e-048
Identities = 70/120 (58%), Positives = 86/120 (71%)
Frame = +1 / -2
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FYLP +YPKL LF D+VV DLT W++D+ GKVN C SFHR+DKY+NFS+
Sbjct: 361 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSH 182
Query: 181 PHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLLTF 360
P I F+P ACGWAYGMN F L W+++ T YH WQN+NE+R LWKLGTLPPGL+T+
Sbjct: 181 PLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITY 2
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 189 bits (408), Expect = 2e-047
Identities = 69/99 (69%), Positives = 80/99 (80%)
Frame = +1 / -1
Query: 283 YHKWQNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVH 462
YH WQN+NE+R LWKLGTLPPGL+T+YK T PLDKSWHVLGLGYNPSI EI NAAVVH
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 450
Query: 463 YNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGCNLSE* 579
+NGNMKPWL++ M +YR WTKY+ YD +I+ CN *
Sbjct: 449 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH* 333
Score = 109 bits (232), Expect = 4e-023
Identities = 51/79 (64%), Positives = 55/79 (69%)
Frame = -2 / +1
Query: 530 YLVQYGRYLVIASSSHGFMFPL**TTAALSISERSMLGLYPNPRTCHDLSSGCVNL*KVK 351
YLVQ RY + SSHGF+FPL *TTAAL IS +LGLYP PRTC DLS G V L* V
Sbjct: 382 YLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSKGLVVL**VI 561
Query: 350 RPGGSVPSFQRTLSSFIFC 294
RPGG+VPSF SF FC
Sbjct: 562 RPGGNVPSFHNVRFSFRFC 618
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 126 bits (270), Expect(3) = 8e-043
Identities = 42/90 (46%), Positives = 65/90 (72%)
Frame = +1 / +3
Query: 304 NEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKP 483
N + W+ GTLP L+TFY +TH L+ SW +GLG++ ID+ +I+ + V+HYNGN+KP
Sbjct: 198 NRYNIPWRFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKP 377
Query: 484 WLELAMTKYRPYWTKYIKYDHPYIRGCNLS 573
WLE+ + KY+PYW KY+K + ++ CN++
Sbjct: 378 WLEIGINKYKPYWAKYLKQEGQFMLECNVN 467
Score = 59.7 bits (124), Expect(3) = 8e-043
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1 / +3
Query: 199 FDPNACGWAYGMNIFDLREWKKKDITGIYHKWQNM 303
FD NAC W G+NI DL++W+K+D+T +Y +W M
Sbjct: 90 FDGNACAWMSGLNIIDLQQWRKQDLTKVYRRWLKM 194
Score = 26.7 bits (52), Expect(3) = 8e-043
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1 / +3
Query: 109 KVNXXXXXCGXSFHRFDKYLNFS 177
KVN C FH KYLN S
Sbjct: 3 KVNGAMEICEVRFHHLRKYLNSS 71
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 160 bits (343), Expect = 2e-038
Identities = 59/87 (67%), Positives = 68/87 (78%)
Frame = +1 / +1
Query: 319 LWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELA 498
LWKLGTLPPGL+TFYK T PLDKSWHV GLGYNPSI EI NAAVVH+NG MKPWL++
Sbjct: 7 LWKLGTLPPGLITFYKTTKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMKPWLDIG 186
Query: 499 MTKYRPYWTKYIKYDHPYIRGCNLSE* 579
M +YR WTKY+ YD +++ CN *
Sbjct: 187 MNQYRDTWTKYVDYDMEFVQMCNFGH* 267
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 159 bits (341), Expect = 4e-038
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = +1 / +1
Query: 322 WKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAM 501
WKLGTLPPGL+T+YK T PLDKSWHVLG GYNPSI EI NAAVVH+NGNMKPWL++ M
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 180
Query: 502 TKYRPYWTKYIKYDHPYIRGCNLSE* 579
+YR WTKY+ +D +++ CN *
Sbjct: 181 NQYRDTWTKYVDFDMEFVQMCNFGH* 258
>gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D10, mRNA sequence
Length = 370
Score = 134 bits (288), Expect = 7e-031
Identities = 44/92 (47%), Positives = 64/92 (69%)
Frame = +1 / +2
Query: 295 QNMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGN 474
+N+N + LW++GTLPP L+ F L HP+D SWH+LGLGY P + + +AAV+HYNG
Sbjct: 38 KNLNSNLRLWRMGTLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGR 217
Query: 475 MKPWLELAMTKYRPYWTKYIKYDHPYIRGCNL 570
KPWL++A + RP W KY+ + +I+ CN+
Sbjct: 218 AKPWLDIAFHELRPLWAKYVDFSDEFIKRCNI 313
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 131 bits (280), Expect = 9e-030
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +1 / +3
Query: 361 YKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYIKY 540
YK T PLDKSWHVLGLGYNPSI EI NAAVVH+NGNMKPWL++ M +YR WTKY+ Y
Sbjct: 3 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 182
Query: 541 DHPYIRGCNLSE* 579
D +++ CN *
Sbjct: 183 DMEFVQMCNFGH* 221
>gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFW66 3' end, mRNA sequence
Length = 879
Score = 107 bits (228), Expect(3) = 2e-029
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +1 / +3
Query: 73 DLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLR 252
DLT W++D+ GKVN C SFHR+DKY+NFS+P I F+P ACGWAYGMN F L
Sbjct: 636 DLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLD 815
Query: 253 EWKKKDI 273
W+K ++
Sbjct: 816 AWRKGEV 836
Score = 31.3 bits (62), Expect(3) = 2e-029
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1 / +2
Query: 1 FYLPXVYPKLXXXLFXXXDIVV 66
FYLP +YPK LF D+VV
Sbjct: 563 FYLPEMYPKSHRVLFLDDDVVV 628
Score = 28.6 bits (56), Expect(3) = 2e-029
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / +1
Query: 259 KKKDITGIYHKWQNMNEDR 315
+++ T YH WQN+NE+R
Sbjct: 823 EREKCTEEYHYWQNLNENR 879
>gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_019_E12 5' similar to Arabidopsis
thaliana sequence At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 119 bits (254), Expect = 4e-026
Identities = 40/81 (49%), Positives = 61/81 (75%)
Frame = +1 / +1
Query: 331 GTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKY 510
GTLP L+TFY +TH L+ SW +GLG++ ID+ +I+ + V+HYNGN+KPWLE+ + KY
Sbjct: 4 GTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGINKY 183
Query: 511 RPYWTKYIKYDHPYIRGCNLS 573
+PYW KY+K + ++ CN++
Sbjct: 184 KPYWAKYLKQEGQFMLECNVN 246
>gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP074G08, mRNA sequence
Length = 317
Score = 118 bits (252), Expect = 7e-026
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = +1 / +2
Query: 334 TLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMTKYR 513
TLPP L+ F L HP+D SWH+LGLGY P + + +AAV+HYNG KPWL++A + R
Sbjct: 2 TLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKPWLDIAFHELR 181
Query: 514 PYWTKYIKYDHPYIRGCNL 570
P W KY+ + +I+ CN+
Sbjct: 182 PLWAKYVDFSDEFIKRCNI 238
>gb|DT637161.1|DT637161 EST1152092 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH039 3' end, mRNA sequence
Length = 879
Score = 105 bits (225), Expect = 4e-022
Identities = 40/78 (51%), Positives = 52/78 (66%)
Frame = +1 / +1
Query: 1 FYLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXCGXSFHRFDKYLNFSN 180
FY+P VYP L +F D+VV DLT + +DL+G VN C +FHR+ KYLNFS+
Sbjct: 574 FYIPEVYPALEKVVFLDHDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSH 753
Query: 181 PHIARNFDPNACGWAYGM 234
P I +FD +ACGWA+GM
Sbjct: 754 PMIRSHFDADACGWAFGM 807
>gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_E03_A029 5', mRNA sequence
Length = 749
Score = 69.8 bits (146), Expect(2) = 6e-022
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +1 / +3
Query: 151 RFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLREW 258
RF Y NFS+P IA+NFDP C WAYGMNIFDL+ W
Sbjct: 642 RFRTYFNFSHPLIAQNFDPQQCPWAYGMNIFDLQAW 749
Score = 54.7 bits (113), Expect(2) = 6e-022
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +1 / +3
Query: 4 YLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXC 135
YLP ++P L +F DIV+ DL+ WD+DL GKVN C
Sbjct: 480 YLPELFPNLHKVVFLDDDIVIQRDLSPLWDIDLQGKVNGAVETC 611
>gb|BF221350.1|BF221350 NXCI_157_F07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_157_F07 5' similar to Arabidopsis
thaliana sequence At5g15470 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 554
Score = 66.6 bits (139), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +1 / +3
Query: 163 YLNFSNPHIARNFDPNACGWAYGMNIFDLREWKKKDITGIYHKW 294
Y NFS+P I NFDP C WAYGMNI DL+ + +I YH W
Sbjct: 423 YFNFSHPLIXXNFDPXQCAWAYGMNILDLQAXRXXNIKETYHYW 554
Score = 55.1 bits (114), Expect(2) = 4e-021
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +1 / +3
Query: 4 YLPXVYPKLXXXLFXXXDIVVXXDLTXXWDVDLNGKVNXXXXXC 135
YLP ++P L +F DIVV DL+ WD+DL GKVN C
Sbjct: 249 YLPELFPNLEKVVFLDDDIVVQHDLSPLWDIDLQGKVNGAVETC 380
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 515,732,528
Number of Sequences: 355925
Number of extensions: 7649946
Number of successful extensions: 43521
Number of sequences better than 1.0e-020: 38
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14408102680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)